genome.fa.s2.2.7.7.80.10.50.1000.101.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Length:  41236440

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  101  of  106  ( 12678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38558185--38558254	31	2.3	29	81	13	72	35	10	8	45	1.68
38559292--38559502	108	1.9	109	89	2	327	42	4	15	37	1.67
38560936--38560971	2	18.0	2	94	0	63	52	0	0	47	1.00
38561652--38561699	1	48.0	1	82	0	60	6	0	2	91	0.48
38561652--38561699	17	2.9	17	88	11	73	6	0	2	91	0.48
38561652--38561699	21	2.3	21	89	10	80	6	0	2	91	0.48
38561652--38561705	20	2.7	19	83	13	65	5	1	3	88	0.67
38564792--38564825	14	2.5	13	86	9	50	0	8	2	88	0.62
38564558--38565114	280	2.0	278	98	1	1080	37	9	6	45	1.63
38565072--38565101	15	1.9	16	93	6	53	0	10	3	86	0.67
38566472--38566539	30	2.3	30	89	0	109	51	4	5	38	1.46
38567637--38567714	38	2.1	38	100	0	156	42	16	2	38	1.62
38567847--38567873	13	2.1	13	100	0	54	85	7	0	7	0.75
38568177--38568291	55	2.1	55	98	0	221	41	22	12	23	1.87
38569829--38569868	21	2.0	21	85	5	55	35	10	10	45	1.71
38570623--38570691	23	2.9	23	82	8	68	59	0	2	37	1.12
38572637--38572725	27	3.2	28	81	6	101	34	10	13	41	1.78
38572700--38572749	24	2.1	24	81	7	57	34	8	12	46	1.70
38572755--38572843	44	2.0	44	89	4	135	32	11	7	48	1.68
38572804--38572852	26	1.9	25	83	4	62	34	14	6	44	1.70
38572929--38573024	29	3.4	29	79	13	103	38	10	7	43	1.67
38572936--38573040	53	2.0	53	84	3	140	39	12	7	40	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38579033--38579067	2	17.5	2	87	0	52	0	51	0	48	1.00
38580948--38581013	2	32.5	2	84	6	80	3	50	1	43	1.27
38589761--38589792	2	16.0	2	100	0	64	50	0	0	50	1.00
38589829--38589863	2	18.0	2	88	5	54	48	2	0	48	1.16
38589761--38589892	68	2.0	64	88	10	187	43	6	9	39	1.63
38594178--38594258	41	2.0	41	92	0	135	35	23	19	20	1.96
38602515--38602542	2	14.0	2	100	0	56	50	0	0	50	1.00
38605585--38605632	2	24.0	2	86	0	69	50	0	4	45	1.21
38608567--38608591	13	1.9	13	100	0	50	48	0	32	20	1.50
38608800--38608855	29	1.9	29	92	0	94	44	7	30	17	1.76
38608794--38608863	29	2.4	28	81	9	86	44	8	27	20	1.80
38609143--38609217	26	2.9	26	100	0	150	16	22	25	36	1.94
38618774--38618829	26	2.2	26	81	9	71	39	1	3	55	1.28
38620428--38620512	43	2.0	44	92	2	145	36	4	10	48	1.59
38639901--38640013	2	56.0	2	84	5	111	45	5	0	44	1.32
38641577--38641623	17	2.8	17	93	0	76	57	8	6	27	1.53
38643272--38643322	25	2.0	25	100	0	102	11	11	27	49	1.74
38660467--38660522	29	1.9	29	92	0	94	33	0	17	48	1.48
38663799--38663882	43	2.0	43	90	4	134	25	30	11	32	1.92
38666165--38666198	17	2.0	17	88	0	50	47	2	11	38	1.55
38671880--38671916	2	18.5	2	88	0	56	45	48	5	0	1.25
38671900--38672185	142	2.0	142	99	0	563	32	25	13	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38675494--38675527	6	5.7	6	100	0	68	17	0	17	64	1.29
38677514--38677591	23	3.5	22	77	8	68	32	2	5	60	1.32
38678193--38678222	2	15.0	2	100	0	60	50	0	0	50	1.00
38681697--38681759	30	2.1	30	84	0	81	58	6	3	31	1.39
38681786--38681826	9	4.4	9	81	6	55	43	0	0	56	0.99
38687045--38687080	13	2.7	13	86	4	54	8	2	0	88	0.59
38692150--38692197	3	16.0	3	95	0	78	62	0	4	33	1.14
38692285--38692327	22	2.0	22	90	0	68	53	0	2	44	1.13
38703347--38703402	25	2.3	24	84	9	69	46	0	0	53	1.00
38712875--38712972	49	2.0	49	100	0	196	42	24	6	26	1.78
38715715--38715773	31	1.9	30	86	10	84	35	0	0	64	0.94
38717417--38717446	15	2.0	15	93	0	51	16	0	0	83	0.65
38717674--38717882	107	1.9	108	91	0	339	44	4	14	36	1.66
38729024--38729074	27	2.0	26	84	7	68	35	1	0	62	1.06
38729525--38729569	21	2.2	21	84	11	58	71	11	0	17	1.14
38734309--38734358	24	2.1	24	100	0	100	16	20	16	48	1.82
38799106--38799190	23	3.7	23	87	1	100	37	16	7	38	1.76
38805638--38805683	20	2.3	20	92	0	74	43	23	4	28	1.73
38807063--38807104	5	8.6	5	89	5	59	0	23	0	76	0.79
38812661--38812705	19	2.3	20	85	11	58	42	2	11	44	1.52
38814594--38814667	23	3.3	23	79	5	71	40	16	8	35	1.78
38814512--38814758	128	1.9	128	87	0	359	34	16	9	39	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38814710--38814753	22	2.0	22	90	0	70	34	20	9	36	1.84
38819456--38819562	20	5.0	21	71	13	101	36	22	8	32	1.84
38819456--38819581	23	5.7	23	75	9	111	36	20	8	34	1.84
38819456--38819562	43	2.5	43	98	0	205	36	22	8	32	1.84
38819624--38819673	22	2.2	22	89	7	73	32	18	8	42	1.79
38821130--38821154	13	1.9	13	100	0	50	0	8	0	92	0.40
38827718--38827763	20	2.3	19	82	10	56	43	23	4	28	1.73
38834800--38834844	19	2.3	20	85	11	58	42	2	11	44	1.52
38838362--38838446	23	3.7	23	87	1	118	36	18	8	36	1.81
38844100--38844145	20	2.3	20	96	0	83	28	4	21	45	1.71
38849205--38849255	2	25.5	2	95	0	93	49	1	0	49	1.12
38849312--38849352	2	20.5	2	100	0	82	48	0	0	51	1.00
38849644--38849707	20	3.0	21	73	13	76	37	21	7	32	1.83
38849644--38849726	23	3.7	23	79	6	91	37	19	8	34	1.82
38849763--38849812	22	2.2	22	85	7	64	32	16	8	44	1.76
38852420--38852457	19	2.0	19	94	0	67	28	0	28	42	1.56
38855966--38855990	13	1.9	13	100	0	50	48	8	0	44	1.32
38857142--38857201	28	2.1	28	84	6	75	45	18	3	33	1.66
38857367--38857404	19	2.0	19	89	0	58	44	26	0	28	1.54
38861042--38861106	2	32.5	2	86	6	87	44	3	1	50	1.26
38861910--38861952	8	5.6	8	81	8	54	2	34	0	62	1.08
38861910--38861958	15	3.2	16	82	8	66	2	34	0	63	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38867005--38867089	23	3.8	22	87	4	107	38	16	7	37	1.76
38866926--38867180	128	2.0	128	88	3	379	36	14	7	41	1.75
38870658--38870706	21	2.4	21	93	3	82	36	8	22	32	1.84
38870667--38870712	21	2.2	21	92	0	74	39	13	19	28	1.89
38871404--38871441	19	2.0	19	89	0	58	55	5	0	39	1.23
38871688--38871757	23	3.0	23	80	12	79	44	17	15	22	1.86
38872218--38872272	24	2.3	24	90	3	85	40	18	9	32	1.82
38872795--38872887	23	4.0	23	75	18	93	46	18	13	21	1.84
38872795--38872887	47	2.0	46	83	6	116	46	18	13	21	1.84
38873437--38873522	23	3.8	22	82	3	91	36	17	8	38	1.79
38874107--38874152	23	2.0	23	86	0	65	15	26	8	50	1.73
38874540--38874619	21	3.7	21	71	15	63	23	28	21	26	1.99
38874516--38874643	45	2.8	45	93	0	220	21	24	23	31	1.98
38874568--38874846	69	4.0	69	90	0	423	22	20	21	35	1.96
38874501--38874712	114	1.9	114	91	4	347	22	22	21	33	1.97
38874515--38874781	114	2.3	111	80	11	274	22	22	22	33	1.97
38874606--38874801	24	8.4	24	70	15	128	20	19	22	36	1.95
38875713--38875750	17	2.3	17	90	4	60	68	10	18	2	1.30
38914890--38915272	191	2.0	191	93	0	649	35	17	15	31	1.91
38917417--38917446	2	15.0	2	100	0	60	0	0	50	50	1.00
38925622--38925677	27	2.1	27	100	0	112	14	3	10	71	1.26
38925643--38925690	16	3.1	15	79	8	51	16	4	6	72	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38926841--38926893	25	2.2	23	81	12	70	35	18	3	41	1.69
38937724--38937780	30	1.9	30	85	0	78	5	22	17	54	1.63
38938944--38938976	2	16.5	2	100	0	66	0	48	0	51	1.00
38943963--38944015	2	26.5	2	92	0	88	49	1	0	49	1.12
38948434--38948520	35	2.5	34	88	5	129	28	5	25	40	1.78
38969097--38969121	13	1.9	13	100	0	50	52	8	0	40	1.31
38982694--38982728	15	2.3	15	95	0	61	48	5	5	40	1.51
38982688--38982729	15	2.6	17	77	14	52	47	4	4	42	1.45
38983330--38983363	2	17.0	2	93	0	59	47	0	2	50	1.16
38988633--38988659	2	13.5	2	100	0	54	51	0	0	48	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106