genome.fa.s2.2.7.7.80.10.50.1000.92.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Length:  41236440

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  92  of  106  ( 12678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35120692--35120732	18	2.3	18	91	8	66	0	21	0	78	0.76
35120866--35120899	13	2.8	13	91	8	54	0	32	5	61	1.20
35121058--35121099	3	14.0	3	100	0	84	0	33	0	66	0.92
35137208--35137238	15	2.1	15	93	0	53	6	58	16	19	1.59
35149448--35149604	51	3.1	51	95	0	269	21	33	10	35	1.87
35151385--35151418	5	6.6	5	86	6	50	0	20	2	76	0.92
35151385--35151427	20	2.2	20	83	8	52	2	20	4	72	1.14
35152401--35152431	16	1.9	16	93	0	53	61	0	0	38	0.96
35156735--35156779	14	3.2	14	81	12	56	31	0	4	64	1.13
35156733--35156769	8	4.9	8	83	12	51	32	0	2	64	1.07
35156732--35156798	34	1.9	35	81	3	82	28	4	4	62	1.34
35158149--35158219	35	2.1	35	84	7	92	30	5	16	46	1.70
35161970--35162005	18	1.9	19	88	5	56	5	5	25	63	1.38
35168354--35168392	2	19.0	2	85	15	53	48	2	2	46	1.29
35175061--35175086	3	8.7	3	100	0	52	0	30	34	34	1.58
35175250--35175339	2	46.5	2	78	10	98	48	4	45	0	1.22
35178957--35178988	15	2.1	15	94	0	55	34	12	15	37	1.85
35178766--35179005	103	2.3	102	82	3	295	26	12	25	36	1.91
35178766--35179021	102	2.5	102	81	3	300	25	12	24	37	1.90
35178985--35179030	22	2.0	23	87	4	67	17	10	28	43	1.82
35179596--35179654	30	2.0	30	93	0	100	23	13	28	33	1.93
35180291--35181044	111	6.7	111	89	2	1017	16	11	26	45	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35180291--35181130	111	7.4	117	87	3	826	16	11	26	44	1.82
35186531--35186586	23	2.5	23	85	2	69	28	30	19	21	1.98
35186714--35186890	94	1.9	95	79	3	205	35	23	11	29	1.90
35186835--35187064	70	3.3	70	88	1	329	33	20	13	32	1.92
35208190--35208240	2	25.5	2	91	0	84	47	0	3	49	1.20
35218533--35218691	82	2.0	81	88	3	239	30	15	18	34	1.93
35218801--35219770	485	2.0	485	98	0	1895	42	17	15	25	1.88
35229682--35229716	14	2.5	14	95	0	61	48	8	2	40	1.49
35235406--35235431	2	13.0	2	100	0	52	50	0	0	50	1.00
35247699--35247723	9	2.8	9	100	0	50	84	0	16	0	0.63
35247695--35247758	20	3.2	19	78	12	74	75	0	21	3	0.95
35249721--35250045	90	3.6	90	76	4	280	20	22	18	38	1.93
35253081--35253124	22	2.0	22	86	8	63	54	6	9	29	1.58
35270569--35270612	2	23.5	2	86	13	67	50	0	0	50	1.00
35278601--35278633	15	2.1	17	88	11	52	69	0	18	12	1.18
35278906--35279055	74	2.0	74	81	2	176	26	22	14	36	1.93
35279016--35279162	78	1.9	78	85	2	206	28	21	13	36	1.92
35282361--35282406	23	2.0	23	95	0	83	17	28	30	23	1.97
35285469--35285518	18	2.9	17	77	11	57	38	6	0	56	1.24
35295302--35295331	5	6.0	5	100	0	60	80	0	20	0	0.72
35295644--35295681	20	1.9	20	94	0	67	31	13	7	47	1.71
35303816--35303843	2	14.0	2	100	0	56	50	0	50	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35331713--35331790	38	2.0	39	87	7	115	43	6	7	42	1.59
35333744--35333781	15	2.4	16	82	8	51	65	0	18	15	1.27
35333771--35333814	22	2.0	22	86	0	61	56	2	11	29	1.46
35337142--35337207	30	2.2	30	97	0	123	59	0	1	39	1.07
35337142--35337233	30	3.0	30	87	1	94	59	0	3	36	1.14
35337238--35337262	13	1.9	13	100	0	50	48	0	4	48	1.20
35350083--35350196	58	2.0	58	91	0	183	40	20	18	21	1.92
35350175--35350284	41	2.7	41	84	2	150	37	19	21	21	1.95
35350402--35350481	41	2.0	41	84	0	106	38	15	22	23	1.92
35350461--35350514	28	1.9	28	92	0	90	37	20	20	22	1.95
35350582--35350649	34	2.0	33	94	2	118	38	22	11	27	1.89
35350733--35350868	47	2.8	49	84	6	170	37	22	14	25	1.92
35350889--35351138	49	5.2	49	78	9	174	37	18	15	29	1.91
35350931--35351134	49	4.2	47	79	12	175	35	17	15	32	1.91
35359790--35359843	13	4.2	12	80	15	54	1	14	1	81	0.86
35359794--35359844	23	2.2	24	86	10	72	3	13	1	80	0.94
35362181--35362210	14	2.1	15	93	6	53	26	26	0	46	1.53
35367600--35367658	2	29.0	2	87	3	82	5	45	0	47	1.24
35382134--35382194	29	2.1	29	84	3	79	29	4	3	62	1.32
35390356--35390460	40	2.7	38	82	4	113	21	39	17	21	1.93
35398480--35398519	18	2.2	19	90	4	64	22	7	0	70	1.12
35399511--35399657	59	2.5	59	88	2	204	9	22	15	52	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35399683--35399726	16	2.6	17	82	10	54	4	29	0	65	1.12
35410923--35410985	29	2.3	26	84	13	74	80	3	6	9	0.98
35413194--35413280	44	1.9	46	93	4	151	72	2	8	17	1.19
35414338--35414400	24	2.6	24	97	0	117	31	19	14	34	1.91
35415868--35415926	19	3.1	19	66	9	57	22	40	15	22	1.90
35417312--35417383	30	2.4	30	79	6	85	30	16	18	34	1.93
35419828--35419886	30	2.0	30	93	0	100	15	32	5	47	1.67
35421162--35421207	22	2.1	22	100	0	92	60	13	4	21	1.49
35430749--35431055	83	3.7	83	91	0	490	33	17	33	15	1.91
35431290--35431718	220	1.9	218	92	3	709	46	7	6	39	1.57
35434006--35434105	47	2.1	47	92	1	164	34	19	25	22	1.96
35443186--35443234	20	2.5	20	86	0	71	61	8	0	30	1.25
35458027--35458066	19	2.0	20	95	4	73	30	0	27	42	1.56
35462183--35462229	22	2.1	23	88	11	71	29	6	14	48	1.69
35466915--35466973	25	2.4	26	80	11	79	16	8	11	62	1.52
35471319--35471369	26	2.0	25	88	3	75	0	23	1	74	0.92
35471338--35471417	37	2.1	38	84	11	103	1	27	2	68	1.10
35471322--35471534	63	3.5	59	78	13	179	1	29	2	66	1.15
35471380--35471534	59	2.6	57	79	14	172	1	31	2	63	1.18
35471549--35471636	34	2.7	34	78	16	96	0	30	2	67	1.03
35471547--35471664	32	3.9	30	77	17	120	1	30	2	65	1.16
35472301--35472346	24	1.9	24	91	8	76	26	8	2	63	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35475660--35475723	27	2.3	27	84	10	76	26	0	9	64	1.24
35475716--35475754	20	1.9	21	84	5	53	20	2	7	69	1.26
35475978--35476020	17	2.7	15	82	10	50	25	0	11	62	1.29
35476017--35476055	20	1.9	21	89	5	62	23	5	5	66	1.32
35475587--35476177	301	2.0	300	94	0	1038	29	7	13	49	1.69
35478063--35478089	14	1.9	14	100	0	54	59	11	0	29	1.32
35488955--35489067	50	2.2	49	78	6	127	49	7	12	30	1.67
35490479--35490560	22	3.8	22	77	9	87	20	10	24	43	1.84
35490572--35490683	23	4.8	22	69	15	82	38	25	10	25	1.88
35490591--35490867	26	11.6	25	72	15	187	37	26	13	22	1.91
35490662--35490844	69	2.7	69	89	0	276	35	27	14	21	1.93
35490857--35490896	21	1.9	21	89	0	62	35	22	20	22	1.96
35490856--35490903	21	2.3	21	81	0	60	35	25	18	20	1.95
35490856--35490909	21	2.6	21	74	11	56	37	24	18	20	1.94
35491028--35491153	60	2.1	60	82	5	148	41	20	7	30	1.81
35494424--35494456	17	1.9	17	88	11	50	42	15	3	39	1.62
35494629--35494772	29	5.0	28	81	7	153	36	11	9	41	1.75
35494607--35494767	59	2.7	58	82	6	173	40	11	9	38	1.73
35500114--35500168	2	26.5	2	81	7	65	50	1	5	41	1.36
35500114--35500169	19	2.8	20	83	8	78	51	1	5	41	1.35
35500114--35500168	17	3.3	16	85	7	65	50	1	5	41	1.36
35501896--35502064	29	5.7	28	75	9	122	38	10	9	42	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35501907--35502064	59	2.7	58	84	4	192	39	8	9	41	1.69
35503201--35503235	2	17.5	2	87	0	52	48	45	2	2	1.32
35503204--35503241	18	2.1	18	95	0	67	47	44	5	2	1.39
35503241--35503289	2	24.5	2	100	0	98	51	0	0	48	1.00
35505044--35505144	42	2.4	43	90	3	161	14	15	8	60	1.58
35518131--35518194	29	2.2	29	86	2	85	45	17	6	31	1.73
35524881--35524911	2	15.5	2	100	0	62	51	0	0	48	1.00
35529538--35529701	73	2.2	74	86	2	222	44	10	19	25	1.83
35529709--35530552	62	13.6	62	82	1	895	34	15	18	32	1.92
35533688--35533889	62	3.3	61	74	4	199	34	13	16	36	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106