genome.fa.s2.2.7.7.80.10.50.1000.99.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Length:  41236440

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  99  of  106  ( 12678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37670192--37670216	2	12.5	2	100	0	50	52	0	0	48	1.00
37683253--37683633	190	2.0	189	91	1	620	49	17	12	21	1.79
37684349--37684420	28	2.5	28	90	4	117	25	12	25	37	1.91
37684355--37684404	26	2.0	25	92	7	84	18	10	32	40	1.83
37690006--37690033	6	4.7	6	100	0	56	17	46	17	17	1.85
37697187--37697240	27	2.0	27	100	0	108	33	25	25	14	1.95
37697815--37697848	3	11.3	3	90	0	50	61	2	35	0	1.11
37698590--37698623	17	2.1	15	89	10	50	0	11	0	88	0.52
37700847--37700928	2	41.0	2	90	0	128	45	0	4	50	1.23
37709068--37709110	17	2.5	17	84	0	59	62	6	0	30	1.21
37718626--37718678	24	2.2	24	80	6	63	43	9	7	39	1.65
37730098--37730148	23	2.3	23	90	10	79	15	17	27	39	1.90
37730186--37730259	25	3.0	25	82	4	78	28	13	21	36	1.91
37730512--37730571	22	2.7	22	68	0	57	33	21	15	30	1.94
37733912--37733960	23	2.1	23	96	0	89	20	16	14	48	1.80
37743054--37743086	17	1.9	18	88	11	52	69	12	9	9	1.36
37755218--37755702	162	3.0	162	90	0	747	35	12	13	37	1.83
37760318--37760367	18	2.7	19	75	12	50	62	0	14	24	1.32
37763259--37763319	7	8.6	7	74	15	54	57	1	0	40	1.08
37763259--37763319	15	4.3	14	72	17	54	57	1	0	40	1.08
37763259--37763317	20	2.9	19	72	18	64	55	1	0	42	1.09
37763433--37763483	24	2.1	24	85	0	66	68	1	11	17	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37763733--37763805	26	2.7	26	81	14	78	63	0	0	36	0.95
37765235--37765272	20	1.9	20	94	0	67	23	0	5	71	1.07
37786754--37786782	2	14.5	2	100	0	58	0	51	0	48	1.00
37786814--37786839	2	13.0	2	100	0	52	0	50	0	50	1.00
37794928--37794952	7	3.6	7	100	0	50	12	0	12	76	1.04
37796557--37796590	18	1.9	18	88	5	52	50	0	2	47	1.16
37796837--37796906	33	2.1	34	83	2	88	38	20	7	34	1.80
37806904--37806938	15	2.3	15	90	0	52	25	20	20	34	1.96
37810426--37810626	75	2.8	74	85	6	243	40	8	13	37	1.75
37818269--37818307	19	2.1	19	85	0	51	46	5	12	35	1.65
37818948--37818981	16	2.1	16	88	0	50	52	5	2	38	1.41
37823665--37823797	68	1.9	68	95	4	239	27	15	11	45	1.81
37828595--37828704	42	2.6	42	84	2	132	38	10	13	38	1.78
37834871--37834909	2	19.5	2	100	0	78	51	0	0	48	1.00
37836504--37836534	14	2.1	15	94	5	55	35	12	25	25	1.92
37837592--37837638	23	2.0	23	84	8	60	40	8	6	44	1.60
37842400--37842449	2	25.0	2	100	0	100	50	0	0	50	1.00
37866169--37866219	25	2.0	25	85	7	68	17	5	13	62	1.50
37874413--37874439	3	9.0	3	100	0	54	66	0	0	33	0.92
37876389--37876417	15	1.9	15	100	0	58	37	0	6	55	1.27
37876849--37876918	32	2.4	28	82	15	95	28	0	2	68	1.04
37876853--37876956	33	3.2	31	81	9	118	32	0	1	65	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37877798--37877827	3	9.7	3	92	7	51	66	0	0	33	0.92
37882268--37882300	5	6.6	5	92	0	57	0	42	0	57	0.98
37884314--37884521	108	1.9	109	87	1	301	37	16	1	43	1.59
37884722--37884761	18	2.2	18	86	13	55	80	0	0	20	0.72
37886598--37886647	17	2.8	17	80	20	50	62	0	2	36	1.07
37901326--37901415	34	2.7	33	84	5	117	43	11	4	41	1.60
37904076--37904152	36	2.1	37	88	4	113	46	11	7	33	1.69
37905948--37906066	42	2.8	42	88	0	175	23	16	21	37	1.93
37910581--37910644	22	2.9	22	83	0	74	12	7	29	50	1.68
37915351--37915403	27	2.0	27	100	0	106	47	0	3	49	1.19
37915750--37915799	25	2.0	26	88	11	77	46	0	0	54	1.00
37925183--37925212	4	7.5	4	100	0	60	50	23	0	26	1.50
37943580--37943704	22	6.0	21	73	12	80	23	12	25	38	1.90
37943610--37943682	38	1.9	38	85	0	101	23	16	27	32	1.96
37950378--37950457	22	3.6	22	70	6	63	41	21	10	27	1.85
37950531--37950603	22	3.3	21	77	11	74	34	32	12	20	1.90
37954026--37954211	22	8.4	21	75	9	120	37	26	14	22	1.92
37954064--37954211	45	3.4	42	76	12	127	36	27	14	21	1.92
37954292--37954412	22	5.5	22	77	3	91	44	23	12	19	1.84
37954026--37954427	22	18.3	21	69	10	82	38	25	13	21	1.91
37957804--37957845	21	2.0	22	86	13	61	23	0	2	73	0.94
37957808--37957846	13	2.8	13	85	11	51	23	0	2	74	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37959359--37959397	8	5.0	8	93	6	62	20	0	0	79	0.73
37959345--37959394	15	3.3	15	85	2	55	20	2	0	78	0.86
37959346--37959394	23	2.2	22	85	3	62	20	2	0	77	0.87
37959359--37959397	15	2.5	15	91	4	60	20	0	0	79	0.73
37959522--37959842	47	7.0	46	79	7	267	37	18	12	31	1.89
37959653--37959736	41	2.0	41	88	4	125	38	17	16	27	1.92
37959606--37959778	88	2.0	88	84	8	228	36	18	13	30	1.90
37959569--37959825	135	1.9	135	82	1	327	36	19	13	31	1.90
37967405--37967444	21	1.9	21	84	0	53	47	2	7	42	1.45
37967696--37967732	15	2.5	14	87	12	56	43	0	2	54	1.14
37967748--37967787	21	1.9	21	84	0	53	47	2	7	42	1.45
37967282--37968007	343	2.1	346	96	1	1332	44	8	6	40	1.61
37988248--37988300	24	2.2	24	83	3	63	3	30	1	64	1.22
37990711--37990752	13	3.5	12	87	6	50	52	0	30	16	1.44
37991006--37991048	22	2.0	22	95	0	77	58	11	11	18	1.63
37991350--37991393	23	2.0	22	81	4	52	40	2	4	52	1.34
37991992--37992047	17	3.2	17	72	5	58	19	19	23	37	1.94
37991965--37992175	35	6.0	34	85	2	163	21	16	18	43	1.88
37991972--37992034	18	3.6	18	67	4	56	17	25	17	39	1.91
37991991--37992044	18	3.1	18	70	5	56	20	20	22	37	1.95
37991987--37992171	70	2.6	70	80	0	208	21	15	18	44	1.87
37998539--37998602	3	21.3	3	87	12	96	29	3	0	67	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38039489--38039533	22	2.1	22	84	12	58	40	8	2	48	1.47
38039818--38039900	29	2.8	29	87	1	112	61	3	0	34	1.13
38040106--38040161	18	3.1	18	73	16	53	35	0	0	64	0.94
38040296--38040367	19	3.8	18	74	18	65	25	1	0	73	0.91
38040297--38040358	12	4.8	12	77	13	61	24	0	0	75	0.80
38040298--38040358	8	7.1	9	78	15	58	24	0	0	75	0.80
38040491--38040520	16	1.9	16	93	6	53	30	0	6	63	1.20
38046565--38046595	2	15.5	2	93	0	53	51	3	0	45	1.17
38056361--38056407	22	2.1	23	84	4	60	57	2	0	40	1.11
38060078--38060124	15	2.9	16	77	17	53	53	4	0	42	1.20
38061792--38061824	2	16.5	2	100	0	66	51	0	48	0	1.00
38062248--38062307	29	2.1	29	84	6	77	58	0	0	41	0.98
38062495--38062554	29	1.9	29	87	12	84	51	3	1	43	1.28
38077022--38077296	144	1.9	143	89	0	424	42	14	11	31	1.82
38102554--38102612	21	2.8	21	84	2	64	40	3	1	54	1.27
38102547--38102612	22	3.0	22	80	4	80	42	3	1	53	1.25
38102950--38103014	29	2.2	28	79	15	69	49	3	43	4	1.39
38105562--38105588	2	13.5	2	100	0	54	51	0	48	0	1.00
38109372--38109412	2	21.0	2	95	5	75	48	0	0	51	1.00
38118291--38118320	12	2.4	12	94	5	51	33	0	0	66	0.92
38118382--38118422	21	2.0	20	85	4	55	46	9	9	34	1.70
38119348--38119377	6	5.0	6	95	0	51	53	0	46	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38121249--38121316	19	3.3	19	66	18	55	30	26	13	29	1.94
38121234--38121323	43	2.1	43	97	0	171	30	24	11	34	1.90
38137562--38137632	4	17.8	4	76	11	65	43	22	1	32	1.62
38137571--38137632	18	3.3	18	78	8	70	43	20	1	33	1.62
38137563--38137617	26	2.1	26	86	0	74	45	20	1	32	1.61
38141411--38141512	53	1.9	54	89	2	161	35	26	13	24	1.93
38143011--38143158	67	2.2	66	87	4	215	25	31	14	29	1.94
38154938--38154968	2	15.5	2	100	0	62	51	0	0	48	1.00
38161956--38162005	22	2.3	21	80	10	57	24	14	2	60	1.45
38161958--38162004	21	2.2	20	79	17	51	23	14	2	59	1.46

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106