genome.fa.s2.2.7.7.80.10.50.1000.96.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Length:  41236440

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  96  of  106  ( 12678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36494964--36494990	4	6.8	4	100	0	54	0	22	0	77	0.76
36509337--36509402	29	2.2	29	84	7	80	28	3	1	66	1.15
36511446--36511489	20	2.2	20	87	0	61	43	6	11	38	1.67
36511639--36511711	21	3.4	21	80	12	78	52	13	4	30	1.59
36511767--36511843	21	3.6	21	81	6	84	51	19	2	25	1.59
36512123--36512327	81	2.5	81	87	3	306	40	10	9	40	1.72
36512484--36512520	9	4.2	9	93	3	58	75	0	0	24	0.80
36514232--36514288	20	2.8	19	80	15	60	73	3	1	21	1.07
36514541--36514622	31	2.6	30	78	17	87	70	2	4	21	1.18
36514522--36514621	20	5.1	19	74	16	64	71	2	5	22	1.16
36514569--36514616	11	4.0	11	78	19	51	75	4	0	20	0.97
36514559--36514614	12	4.6	12	77	16	53	75	3	1	19	1.05
36516115--36516184	29	2.4	29	80	0	86	21	25	17	35	1.95
36516159--36516215	23	2.5	23	88	0	78	24	24	15	35	1.95
36516201--36516258	29	2.0	29	82	0	71	22	24	17	36	1.95
36516533--36516647	57	2.0	57	80	6	126	42	5	6	46	1.51
36516590--36516753	81	2.1	79	82	4	197	41	7	7	42	1.63
36518822--36518876	20	2.6	22	80	11	62	67	0	0	32	0.91
36554403--36554445	21	2.0	21	86	0	59	25	20	9	44	1.81
36555448--36555473	3	8.7	3	100	0	52	30	0	0	69	0.89
36563424--36563537	55	2.1	56	93	1	194	44	5	25	24	1.74
36574006--36574038	6	5.7	6	92	7	59	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36577336--36577378	16	2.8	16	85	3	61	44	0	4	51	1.22
36577614--36577663	19	2.6	20	75	9	50	50	0	4	46	1.20
36581436--36581465	5	6.0	5	100	0	60	80	0	20	0	0.72
36581573--36581597	6	4.2	6	100	0	50	84	0	16	0	0.63
36589061--36589101	2	21.0	2	95	5	75	48	0	0	51	1.00
36589448--36589577	31	4.6	29	78	17	134	53	6	0	39	1.26
36589482--36589561	22	3.4	22	79	16	81	52	6	0	40	1.27
36589478--36589561	26	3.4	24	75	19	84	53	5	0	39	1.25
36589514--36589588	30	2.7	29	82	12	77	54	6	0	38	1.27
36589651--36589676	2	13.0	2	100	0	52	0	50	0	50	1.00
36590398--36590437	21	1.9	21	85	10	55	5	12	7	75	1.18
36601977--36602001	12	2.1	12	100	0	50	60	16	24	0	1.36
36604134--36604241	53	2.0	53	100	0	216	25	16	22	35	1.95
36605659--36605683	6	4.2	6	100	0	50	68	0	0	32	0.90
36637617--36637717	43	2.3	44	81	6	109	42	16	13	26	1.86
36643325--36643349	13	1.9	13	100	0	50	24	0	8	68	1.16
36644491--36644557	34	1.9	35	90	6	109	35	10	40	13	1.79
36645971--36646048	3	28.7	3	73	19	57	74	0	1	24	0.89
36645967--36646068	27	3.5	27	81	11	105	73	0	2	22	1.03
36645967--36646031	13	5.2	12	80	14	69	78	0	1	20	0.83
36645967--36646050	38	2.2	37	83	10	98	75	0	1	23	0.88
36645988--36646048	17	3.7	17	75	18	58	75	0	0	24	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36646266--36646312	24	1.9	23	87	12	67	76	0	8	14	1.01
36646580--36646654	25	3.0	25	94	0	123	41	6	34	17	1.76
36646613--36646666	25	2.2	25	83	3	65	46	5	35	12	1.66
36647675--36647727	27	1.9	28	84	3	72	71	0	7	20	1.10
36647936--36647999	14	4.7	14	69	7	51	70	0	3	26	1.02
36648088--36648159	13	5.6	12	76	16	65	69	0	5	25	1.10
36648120--36648148	12	2.3	13	94	5	51	68	0	3	27	1.05
36658456--36658486	13	2.4	13	94	0	53	90	3	6	0	0.55
36658446--36658493	23	2.1	22	84	3	60	85	6	8	0	0.74
36676007--36676109	51	2.0	51	98	0	197	47	13	11	27	1.77
36679132--36679247	23	5.0	23	68	21	73	18	2	2	75	1.03
36679134--36679261	7	17.3	7	70	22	59	17	3	2	76	1.02
36679134--36679261	9	15.1	8	68	18	73	17	3	2	76	1.02
36679152--36679262	15	7.3	15	69	14	59	19	3	1	74	1.05
36679151--36679242	17	5.7	16	72	19	75	20	3	1	75	1.01
36679132--36679247	12	9.7	12	68	20	57	18	2	2	75	1.03
36679585--36679629	9	4.9	9	86	2	63	26	2	0	71	0.98
36679648--36679681	18	1.9	18	94	5	61	23	0	0	76	0.79
36680589--36680622	2	17.0	2	93	0	59	0	47	0	52	1.00
36681165--36681207	16	2.7	17	82	13	56	20	0	2	76	0.89
36681168--36681207	15	2.6	15	85	14	55	20	0	2	77	0.88
36681587--36681674	46	1.9	46	85	0	122	36	26	9	28	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36681444--36681701	135	1.9	135	90	0	408	30	24	10	34	1.89
36681704--36681761	30	1.9	30	89	0	89	18	18	15	46	1.84
36681623--36682447	290	2.8	290	90	4	1202	28	27	8	34	1.87
36685806--36685832	14	1.9	14	100	0	54	66	7	3	22	1.33
36688925--36688998	36	2.0	37	84	7	98	62	1	2	33	1.18
36688954--36689008	28	1.9	29	88	3	85	61	0	3	34	1.13
36688954--36689035	29	2.9	28	83	5	85	57	0	2	40	1.12
36692446--36692498	14	3.9	14	72	5	54	50	0	0	49	1.00
36693571--36693604	15	2.3	15	89	0	50	35	0	5	58	1.22
36693580--36693634	26	2.1	26	83	6	67	32	0	3	63	1.12
36693776--36693833	23	2.5	24	81	15	70	50	0	0	50	1.00
36699257--36699305	25	2.0	25	88	4	73	63	0	4	32	1.13
36699966--36699995	3	10.0	3	100	0	60	33	0	0	66	0.92
36704664--36704695	6	5.5	6	92	7	57	34	0	65	0	0.93
36706080--36706108	6	4.8	6	100	0	58	34	17	34	13	1.89
36711551--36711629	41	2.0	40	87	2	113	40	3	16	39	1.67
36712033--36712093	23	2.7	23	75	9	63	63	6	9	19	1.46
36725107--36725148	6	7.2	6	84	10	52	0	14	2	83	0.75
36725107--36725151	14	3.0	16	80	9	51	0	15	2	82	0.77
36726006--36726066	31	1.9	31	83	3	77	62	1	4	31	1.26
36750435--36750475	12	3.3	12	86	6	55	34	0	0	65	0.93
36750438--36750475	13	3.0	13	92	3	60	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36755739--36755920	93	2.0	92	90	1	283	31	21	17	30	1.96
36782578--36782608	2	15.5	2	93	0	53	54	0	45	0	0.99
36792671--36792710	18	2.2	18	86	8	55	40	0	0	60	0.97
36797979--36798058	24	3.3	24	92	0	142	38	16	13	31	1.87
36800566--36800626	15	4.1	15	84	0	86	31	4	29	34	1.79
36800791--36800823	17	1.9	17	100	0	66	39	0	6	54	1.25
36800800--36800884	32	2.6	32	78	14	77	34	2	2	61	1.22
36802276--36802307	15	2.1	15	94	0	55	37	18	3	40	1.67
36808934--36808978	19	2.3	19	85	11	56	64	0	2	33	1.06
36811589--36811628	16	2.7	14	85	11	53	0	22	0	77	0.77
36812126--36812165	18	2.1	18	86	9	53	5	7	7	80	1.03
36812138--36812207	27	2.8	23	73	23	61	12	1	5	80	0.96
36813772--36813826	15	3.7	14	76	11	56	20	9	38	32	1.84
36813772--36813828	30	1.9	30	85	0	78	21	8	36	33	1.84
36814094--36814129	18	2.0	18	89	10	56	58	0	2	38	1.13
36816873--36817096	62	3.6	62	85	1	286	32	22	19	25	1.97
36820839--36820882	11	3.9	11	88	5	70	54	18	2	25	1.55
36820923--36820979	23	2.4	23	85	8	71	47	29	3	19	1.66
36834049--36834096	17	2.7	18	81	9	55	47	0	2	50	1.12
36834295--36834343	21	2.3	21	92	0	80	26	18	18	36	1.94
36835012--36835230	118	1.9	115	86	4	314	30	6	1	61	1.33
36835176--36835226	19	2.9	17	80	8	50	37	0	0	62	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36835199--36835232	16	2.1	16	94	0	59	26	0	0	73	0.83
36837592--36837703	35	3.2	35	90	0	170	33	8	32	25	1.87
36837708--36837807	38	2.6	38	88	1	146	21	22	33	24	1.98
36839240--36839300	15	4.3	15	73	12	56	57	0	0	42	0.98
36839183--36839300	42	2.8	41	76	7	112	55	0	0	43	1.11
36839383--36839430	17	2.8	17	75	6	53	56	0	0	43	0.99
36839220--36839534	159	2.0	159	91	7	484	47	3	1	45	1.29
36840897--36840935	15	2.7	16	77	22	50	69	7	0	23	1.14
36842179--36842252	32	2.3	32	86	6	96	51	9	2	36	1.49
36842428--36842470	18	2.4	19	80	11	54	25	0	6	67	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106