genome.fa.s2.2.7.7.80.10.50.1000.45.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Length:  41236440

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  45  of  106  ( 12678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17047084--17047122	7	5.6	7	90	0	51	46	0	5	48	1.24
17050435--17050545	56	2.0	56	90	0	177	36	14	9	39	1.79
17052701--17052770	28	2.5	28	79	6	70	61	14	1	22	1.41
17062484--17062537	2	27.0	2	100	0	108	50	0	0	50	1.00
17079221--17079267	17	2.7	18	83	12	62	44	0	2	53	1.12
17079496--17079542	21	2.2	22	77	11	53	27	10	10	51	1.70
17085375--17085473	28	3.6	28	79	2	101	43	14	4	38	1.64
17085369--17085482	55	2.1	55	86	0	156	43	14	6	35	1.70
17085389--17085482	27	3.4	27	75	2	80	43	12	5	38	1.66
17091568--17091597	12	2.5	12	94	0	51	40	10	13	36	1.78
17091871--17091924	12	4.3	12	74	6	54	37	18	7	37	1.79
17094193--17094245	2	26.5	2	96	0	97	47	1	0	50	1.12
17094761--17094798	12	3.2	12	88	0	58	42	7	31	18	1.79
17098302--17098358	30	1.9	30	92	0	96	33	14	15	36	1.88
17101544--17101591	21	2.3	21	82	3	53	35	14	16	33	1.89
17102703--17102913	77	2.7	78	79	5	230	23	18	24	34	1.96
17105120--17106169	531	2.0	530	84	2	1401	35	13	15	36	1.86
17108247--17108309	32	2.0	32	90	0	99	25	17	31	25	1.97
17112327--17112404	25	3.0	25	75	9	77	25	30	20	23	1.98
17114568--17114606	17	2.5	15	91	8	60	0	17	5	76	0.96
17117303--17117327	2	12.5	2	100	0	50	52	0	0	48	1.00
17117356--17117480	36	3.5	36	83	4	146	27	36	14	22	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17127551--17127589	2	20.0	2	89	5	62	53	0	0	46	1.00
17133937--17134192	35	7.3	35	79	4	232	43	12	6	37	1.69
17136046--17136085	21	2.0	20	85	14	55	30	2	22	45	1.66
17136095--17136235	42	3.4	42	76	8	135	24	21	31	23	1.98
17136964--17136988	9	2.8	9	100	0	50	88	0	0	12	0.53
17137300--17137339	19	2.1	19	90	0	62	35	2	25	37	1.69
17137298--17137331	5	7.0	5	93	6	61	38	0	20	41	1.53
17142065--17142089	13	1.9	13	100	0	50	44	0	8	48	1.32
17143294--17143332	2	19.5	2	83	0	51	48	5	2	43	1.38
17145929--17145968	21	1.9	21	85	10	55	27	12	10	50	1.72
17147279--17147435	66	2.4	66	87	7	212	29	14	24	31	1.94
17148977--17149020	19	2.3	19	100	0	88	36	20	13	29	1.91
17158189--17158226	19	2.0	19	89	0	58	26	0	28	44	1.54
17160685--17160812	42	3.0	43	86	2	170	24	21	32	21	1.98
17160877--17160921	2	23.0	2	86	4	65	51	2	2	44	1.26
17163134--17163290	66	2.4	66	89	5	228	27	13	27	31	1.94
17165857--17165974	4	29.5	4	84	0	137	46	3	5	44	1.44
17165857--17165974	10	11.8	10	85	0	137	46	3	5	44	1.44
17173286--17173326	21	1.9	21	90	5	64	17	24	7	51	1.70
17173281--17173333	21	2.5	21	82	11	63	15	24	5	54	1.62
17175956--17175989	2	17.0	2	100	0	68	50	0	0	50	1.00
17179158--17179288	55	2.4	55	96	0	235	25	34	16	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17182233--17182289	30	1.9	30	89	7	89	33	28	15	22	1.95
17185231--17185318	2	44.5	2	93	2	151	48	1	1	48	1.16
17186262--17186291	2	15.0	2	100	0	60	50	0	0	50	1.00
17192717--17192757	21	2.0	21	90	0	64	39	26	9	24	1.86
17192675--17192790	58	2.0	58	94	0	205	44	23	6	25	1.77
17195993--17196033	21	1.9	21	85	5	55	63	7	21	7	1.45
17206381--17206536	52	3.0	52	93	0	267	22	14	31	31	1.94
17206493--17206625	36	3.7	35	79	7	124	21	13	33	30	1.92
17206493--17206625	35	3.6	36	80	9	119	21	13	33	30	1.92
17206839--17207153	73	4.3	73	76	1	252	27	20	25	27	1.99
17206838--17207122	146	1.9	147	81	3	342	27	20	23	28	1.99
17214036--17214102	35	1.9	34	82	8	82	28	29	11	29	1.92
17214586--17214625	16	2.4	17	84	16	57	40	0	2	57	1.12
17214704--17214759	22	2.6	22	78	13	55	53	0	0	46	1.00
17214701--17214764	8	8.1	8	73	13	53	53	0	0	46	1.00
17223366--17223403	17	2.2	18	80	4	51	31	5	0	63	1.17
17223472--17223544	24	3.0	24	77	18	71	28	1	0	69	0.96
17239560--17239615	22	2.6	21	76	18	60	53	1	42	1	1.21
17239574--17239618	6	7.7	6	77	22	51	53	0	46	0	1.00
17243289--17243354	7	9.6	7	72	19	50	80	1	1	16	0.87
17243290--17243354	20	3.2	20	77	16	62	80	1	1	16	0.88
17243297--17243350	27	2.0	27	89	3	83	79	0	1	18	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17243941--17244133	106	1.8	106	82	2	253	28	24	33	13	1.94
17250022--17250272	126	2.0	125	99	0	484	29	24	21	24	1.99
17257902--17258168	37	7.1	37	76	6	200	22	15	19	41	1.89
17257939--17258160	114	2.0	112	81	5	259	23	14	20	41	1.89
17258355--17258393	16	2.4	16	87	12	53	79	0	2	17	0.84
17258883--17258971	44	2.0	44	84	0	115	31	20	34	13	1.91
17258994--17259186	106	1.8	106	86	0	278	29	25	32	13	1.94
17260430--17260516	8	11.2	8	77	12	76	78	0	1	20	0.82
17260398--17260520	62	2.0	59	84	7	158	74	0	4	20	1.02
17260435--17260519	21	4.0	22	77	14	99	77	0	1	21	0.83
17260442--17260519	32	2.5	33	83	10	110	78	0	1	20	0.83
17260437--17260513	16	4.9	16	83	9	97	79	0	1	19	0.81
17260437--17260516	24	3.4	24	82	3	92	78	0	1	20	0.81
17262117--17262183	29	2.3	30	86	2	91	55	8	4	31	1.51
17262217--17262258	2	21.5	2	95	4	77	50	0	0	50	1.00
17269993--17270047	19	2.8	20	83	8	69	47	5	0	47	1.25
17270348--17270422	22	3.4	22	70	9	62	50	1	5	42	1.33
17270145--17270490	163	2.1	163	87	6	499	43	4	5	46	1.46
17271210--17271248	19	2.1	19	85	9	53	30	7	28	33	1.85
17272808--17272863	27	2.0	28	86	3	78	41	5	8	44	1.58
17273064--17273116	24	2.4	21	75	12	52	3	16	11	67	1.35
17283338--17283376	15	2.6	15	100	0	78	56	7	12	23	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17286391--17286594	84	2.5	84	92	2	333	36	8	9	45	1.69
17286775--17286835	31	2.0	31	93	0	104	40	19	6	32	1.77
17291111--17291261	67	2.2	68	86	1	205	33	25	12	28	1.92
17292913--17293023	46	2.4	46	98	0	213	27	34	11	27	1.91
17292999--17293091	43	2.2	43	90	0	141	23	33	16	26	1.95
17303823--17303860	19	2.0	20	84	5	51	31	13	0	55	1.38
17304345--17304478	27	4.9	27	69	12	76	58	1	0	39	1.13
17304453--17304561	41	2.6	43	78	15	129	53	1	5	39	1.35
17306908--17306994	21	4.2	21	71	14	81	21	12	20	44	1.85
17307117--17307185	22	3.2	21	87	4	84	27	2	15	53	1.56
17307212--17307280	21	3.3	21	83	2	86	33	4	14	47	1.64
17307215--17307300	21	4.0	21	78	6	75	32	4	12	50	1.61
17307262--17307305	21	2.1	21	83	8	54	36	4	11	47	1.60
17307446--17307507	21	3.0	21	78	4	72	41	9	9	38	1.71
17307446--17307504	20	2.9	21	79	5	66	44	10	10	35	1.72
17308023--17308089	28	2.4	28	82	0	71	31	11	22	34	1.90
17308047--17308104	28	2.1	28	83	6	73	32	13	22	31	1.93
17308213--17308371	84	1.9	84	86	2	230	23	13	10	52	1.71
17310317--17310516	100	2.0	100	86	2	276	42	13	17	27	1.86
17310615--17310666	20	2.5	20	79	17	54	40	1	0	57	1.10
17311363--17311394	16	1.9	17	93	6	57	15	9	6	68	1.36
17329076--17329131	20	2.6	21	83	13	69	71	5	0	23	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17330275--17330308	2	17.0	2	93	0	59	52	0	0	47	1.00
17332052--17332295	124	2.0	123	81	4	285	31	12	10	45	1.76
17332269--17332368	29	3.5	28	82	5	103	34	12	16	38	1.85
17342337--17342400	28	2.3	28	77	0	74	35	10	12	40	1.78
17342298--17342447	83	1.8	80	81	4	183	33	12	14	40	1.83
17343580--17343610	16	1.9	16	93	0	53	74	3	3	19	1.10
17344607--17344937	43	7.7	43	78	3	297	41	12	14	31	1.84
17344607--17344937	129	2.6	130	80	2	362	41	12	14	31	1.84
17347703--17347755	25	2.2	24	83	10	63	37	1	0	60	1.08
17347761--17347803	21	2.0	22	82	13	54	48	0	6	44	1.29

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106