genome.fa.s2.2.7.7.80.10.50.1000.71.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Length:  41236440

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  71  of  106  ( 12678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27100524--27100656	35	3.8	35	78	2	142	27	34	9	28	1.87
27100524--27100656	70	1.9	70	82	0	167	27	34	9	28	1.87
27100593--27100797	103	2.0	103	85	0	275	25	37	11	25	1.89
27102858--27103002	37	3.9	37	87	2	204	29	9	35	25	1.88
27108007--27108057	22	2.4	21	90	3	75	27	7	17	45	1.76
27108398--27108546	37	4.0	37	93	3	255	27	10	36	24	1.89
27110439--27110542	39	2.7	39	80	5	120	37	21	17	24	1.94
27110751--27110871	42	2.9	41	85	2	170	23	33	20	21	1.97
27117187--27117211	12	2.1	12	100	0	50	32	8	16	44	1.76
27120061--27120115	20	2.7	20	83	11	67	27	18	12	41	1.86
27119969--27120204	111	2.1	110	82	6	280	30	13	15	40	1.86
27128417--27128449	14	2.4	14	100	0	66	27	15	6	51	1.66
27129057--27129116	18	3.0	21	76	11	65	55	0	6	38	1.27
27136077--27136279	29	7.0	29	83	5	266	38	13	10	37	1.80
27136088--27136279	88	2.2	88	86	4	282	40	13	10	35	1.79
27141316--27141361	20	2.3	20	92	0	74	43	21	4	30	1.72
27142353--27142397	2	22.5	2	95	0	81	53	0	46	0	1.00
27142701--27142731	2	15.5	2	100	0	62	51	0	0	48	1.00
27145427--27145473	22	2.0	24	84	15	64	48	6	25	19	1.72
27145436--27145479	22	2.0	22	82	8	54	54	9	20	15	1.68
27153427--27153473	22	2.0	24	84	15	64	48	6	25	19	1.72
27153436--27153479	22	2.0	22	82	8	54	54	9	20	15	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27173390--27173540	52	2.9	52	81	4	169	32	21	14	31	1.93
27175183--27175238	21	2.7	21	73	15	53	16	32	1	50	1.55
27175181--27175261	36	2.2	36	88	0	117	14	32	4	48	1.66
27178153--27178207	25	2.2	25	93	0	92	12	0	23	63	1.29
27178373--27178414	20	2.1	20	86	0	57	30	4	4	59	1.39
27182817--27183051	60	4.0	60	87	2	289	24	19	32	22	1.97
27189206--27189306	21	4.5	20	72	24	78	61	2	31	3	1.29
27189390--27189520	55	2.3	54	83	7	154	58	5	34	1	1.30
27190085--27190350	60	4.5	60	88	1	367	25	18	31	24	1.98
27194502--27194684	60	3.0	60	86	4	253	23	32	16	26	1.96
27195406--27195442	18	2.1	17	90	5	56	0	29	0	70	0.88
27195494--27195544	12	4.1	12	92	5	75	1	31	0	66	1.03
27195494--27195544	25	2.0	25	88	7	77	1	31	0	66	1.03
27195566--27195602	17	2.2	16	95	4	65	0	24	0	75	0.80
27197193--27197258	29	2.4	27	72	13	64	21	18	34	25	1.96
27199390--27199438	24	2.0	24	96	0	89	53	12	8	26	1.66
27203433--27203467	2	17.5	2	87	0	52	45	2	2	48	1.32
27203470--27203518	23	2.3	21	82	10	55	28	36	6	28	1.81
27205494--27205544	25	2.0	25	100	0	102	27	17	27	27	1.98
27207132--27207173	20	2.0	21	86	4	59	16	30	7	45	1.74
27207994--27208107	43	2.7	43	89	4	160	21	20	35	21	1.96
27241936--27242025	35	2.5	35	82	5	101	28	36	13	21	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27246194--27246232	2	19.5	2	100	0	78	51	0	0	48	1.00
27246777--27246846	35	2.0	34	83	2	86	30	27	14	28	1.95
27262256--27262391	43	3.2	43	91	3	204	25	16	33	24	1.95
27262427--27262457	12	2.6	12	94	0	53	6	0	41	51	1.27
27266030--27266132	38	2.7	38	86	8	129	24	16	36	22	1.94
27268428--27268475	24	2.0	23	88	4	69	66	4	27	2	1.21
27273337--27273373	19	1.9	19	94	0	65	16	27	29	27	1.97
27290351--27290394	21	2.2	20	83	4	52	22	9	4	63	1.42
27298121--27298164	21	2.2	20	91	4	70	22	4	9	63	1.42
27329088--27329195	42	2.4	45	78	9	123	21	25	36	17	1.95
27333027--27333126	36	2.7	39	75	10	109	23	18	36	23	1.95
27335320--27335387	25	2.8	26	78	10	72	10	32	16	41	1.82
27340903--27341274	189	2.0	183	95	0	609	30	23	5	38	1.78
27346892--27347053	43	3.8	43	85	1	191	24	19	33	22	1.97
27347063--27347147	26	3.3	26	88	1	127	25	2	38	32	1.69
27347150--27347179	2	15.0	2	92	0	51	50	3	0	46	1.18
27350645--27350688	2	22.0	2	90	0	70	0	45	0	54	0.99
27357551--27357679	42	3.1	42	83	6	172	26	20	31	20	1.98
27357551--27357704	84	1.8	84	83	5	204	25	20	32	21	1.97
27358058--27358099	21	2.0	21	85	0	57	33	19	21	26	1.97
27363814--27363882	8	9.2	8	75	22	62	20	1	2	75	1.01
27363814--27363884	28	2.4	30	84	13	94	19	1	2	76	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27363815--27363884	14	4.8	14	81	13	70	20	1	2	75	1.00
27363832--27363914	29	2.8	28	79	18	73	18	2	8	71	1.23
27364404--27364434	14	2.2	14	100	0	62	41	0	0	58	0.98
27365565--27365899	38	8.8	38	86	3	451	41	19	15	22	1.89
27366730--27366773	15	2.8	15	80	19	54	6	2	9	81	0.94
27379725--27379771	24	2.0	24	82	0	58	23	4	4	68	1.26
27385535--27385590	9	6.2	9	75	8	51	51	0	33	14	1.42
27386040--27386080	17	2.2	20	87	12	61	48	2	7	41	1.44
27390542--27390572	2	15.5	2	93	0	53	48	0	0	51	1.00
27391716--27391851	43	3.2	43	91	3	222	25	35	16	23	1.95
27406808--27406913	38	2.7	39	85	5	135	22	36	16	24	1.94
27411656--27411820	42	3.9	42	87	0	249	23	22	30	23	1.99
27411876--27412036	83	1.9	83	91	0	259	21	18	39	21	1.93
27415976--27416091	42	2.8	42	91	0	187	24	20	31	24	1.98
27416147--27416307	83	1.9	83	94	0	286	20	17	39	22	1.92
27416347--27416588	82	2.9	84	88	3	382	23	16	38	21	1.93
27416647--27416708	26	2.4	26	94	0	106	24	3	40	32	1.71
27419848--27421628	895	2.0	895	89	0	2740	27	26	17	28	1.98
27426201--27426228	2	14.0	2	100	0	56	0	50	0	50	1.00
27426127--27426336	108	2.0	107	99	0	402	21	29	10	38	1.87
27426311--27426344	2	17.0	2	100	0	68	0	50	0	50	1.00
27437307--27437336	14	2.1	14	93	0	51	73	0	26	0	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27437501--27437568	35	2.0	34	82	8	84	14	8	42	33	1.77
27441917--27441982	33	2.0	33	100	0	132	45	12	6	36	1.66
27447191--27447218	2	14.0	2	100	0	56	50	0	0	50	1.00
27452059--27452100	22	1.9	22	85	9	59	28	11	19	40	1.87
27463191--27463227	19	1.9	19	94	0	65	43	27	0	29	1.55
27465049--27465091	21	2.1	20	86	4	59	23	4	9	62	1.44
27479269--27479306	3	12.7	3	88	0	58	34	26	0	39	1.57
27481082--27481116	13	2.7	13	81	0	52	11	2	0	85	0.69
27481796--27481837	22	1.9	22	95	0	75	28	21	19	30	1.97
27483256--27483296	21	1.9	21	85	5	55	48	7	26	17	1.73
27483251--27483302	21	2.4	21	77	3	50	51	7	25	15	1.69
27486260--27486370	43	2.6	43	79	2	116	25	20	36	18	1.95
27486380--27486439	23	2.6	23	89	0	84	26	1	38	33	1.67
27488232--27488297	22	3.0	22	90	0	105	28	7	22	40	1.81
27488330--27488354	5	5.0	5	100	0	50	40	0	20	40	1.52
27492858--27492898	21	1.9	22	90	5	66	51	7	24	17	1.70
27492858--27492904	21	2.2	21	84	3	58	55	8	21	14	1.66
27499314--27499347	6	5.7	6	92	0	50	41	0	8	50	1.34
27499353--27499415	20	3.2	20	84	2	92	31	39	1	26	1.66
27507153--27507191	2	19.5	2	94	0	69	48	0	2	48	1.15
27507204--27507266	20	3.2	20	90	2	101	30	41	3	25	1.71
27507265--27507383	43	2.8	43	89	2	168	19	37	21	21	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27535082--27535120	19	2.1	19	85	0	51	56	0	0	43	0.99
27537593--27537639	22	2.0	24	84	15	64	19	25	6	48	1.72
27544070--27544177	40	2.8	37	76	14	101	25	40	12	21	1.89
27551966--27552080	35	3.3	35	93	2	196	30	8	31	29	1.87
27566449--27566577	60	2.2	60	90	2	197	24	21	19	34	1.96
27566449--27566615	60	2.8	60	85	1	183	25	19	18	36	1.94
27570549--27570679	42	3.1	42	78	0	136	25	18	33	22	1.97
27570744--27570794	2	25.5	2	93	0	84	50	1	1	45	1.24
27573822--27573868	16	2.9	16	84	6	60	74	2	23	0	0.93
27577293--27577338	22	2.1	21	84	4	56	21	26	21	30	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106