genome.fa.s135.2.7.7.80.10.50.1000.100.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  100  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18288424--18288469	19	2.3	20	85	7	67	50	0	0	50	1.00
18288588--18288621	15	2.2	16	89	5	52	64	2	0	32	1.08
18292191--18292226	18	1.9	19	88	5	56	33	11	8	47	1.69
18295819--18295862	22	2.0	22	82	8	54	40	0	0	59	0.98
18298455--18298506	27	2.0	26	88	3	77	26	5	0	67	1.13
18306708--18306773	30	2.4	28	76	18	66	40	1	1	56	1.18
18306767--18306822	20	2.6	22	80	11	62	35	0	3	60	1.14
18307273--18307314	19	2.3	19	87	4	59	30	0	0	69	0.89
18307274--18307311	20	1.9	20	88	0	58	28	0	0	71	0.87
18307317--18307394	32	2.5	31	77	6	84	57	2	0	39	1.12
18308080--18308137	16	3.8	16	75	13	59	46	0	0	53	1.00
18308080--18308131	14	3.6	14	87	7	61	48	0	0	51	1.00
18308112--18308153	22	2.0	22	90	4	68	47	2	0	50	1.14
18308986--18309028	12	3.7	12	81	12	54	53	0	0	46	1.00
18310297--18310367	22	3.2	22	75	2	70	18	1	33	46	1.58
18310305--18310442	16	9.0	15	67	10	82	21	2	31	45	1.63
18310308--18310383	23	3.3	23	74	3	73	21	1	31	46	1.60
18310354--18310450	15	6.1	16	76	10	92	20	3	29	46	1.66
18310347--18310441	31	3.0	30	81	7	109	20	3	30	46	1.66
18310353--18310440	7	11.2	8	69	12	58	20	2	30	46	1.63
18311875--18311937	27	2.3	27	86	5	83	39	1	1	57	1.18
18313460--18313530	9	8.2	9	72	18	53	49	0	1	49	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18313460--18313530	26	2.8	26	87	4	101	49	0	1	49	1.09
18313494--18313533	15	2.6	16	84	4	55	50	0	2	47	1.14
18313504--18313591	19	4.9	18	74	16	60	51	1	2	45	1.21
18313621--18313735	15	7.8	15	72	18	57	39	1	2	56	1.23
18313621--18313892	44	6.2	44	75	15	210	41	1	1	54	1.20
18313672--18314018	18	18.7	18	69	21	136	42	1	1	54	1.16
18313643--18313985	122	2.8	122	79	12	302	42	1	1	54	1.19
18313875--18314047	87	2.0	85	83	7	215	44	1	2	51	1.24
18314122--18314170	22	2.2	22	81	0	53	36	8	4	51	1.51
18314195--18314229	14	2.4	14	90	4	52	51	2	0	45	1.16
18314842--18314895	15	3.9	14	77	15	51	25	0	1	72	0.95
18314888--18314925	18	2.2	18	86	9	53	50	0	0	50	1.00
18314886--18314938	21	2.5	21	78	9	54	47	0	0	52	1.00
18314897--18314932	16	2.1	17	90	10	56	55	0	0	44	0.99
18315222--18315248	2	13.5	2	100	0	54	48	0	0	51	1.00
18319397--18319439	18	2.4	17	82	17	52	30	0	2	67	1.03
18319431--18319468	19	2.0	20	94	5	69	52	0	2	44	1.14
18319440--18319500	29	2.0	32	84	15	85	55	0	3	40	1.16
18326858--18326913	25	2.2	25	100	0	112	55	0	3	41	1.17
18327703--18327762	29	2.1	29	90	0	93	45	3	1	50	1.28
18333674--18333716	22	1.9	23	90	4	70	46	0	0	53	1.00
18336128--18336161	10	3.4	10	91	0	50	2	44	0	52	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18339798--18339837	11	3.6	11	80	12	55	70	0	2	27	1.01
18340793--18340850	22	2.7	21	75	19	57	50	0	0	50	1.00
18340889--18340955	33	2.0	35	82	8	86	46	2	7	43	1.47
18342823--18342860	3	13.0	3	94	5	69	34	0	0	65	0.93
18351420--18351559	74	1.9	74	89	0	217	47	15	12	23	1.80
18354721--18354774	21	2.5	22	82	11	58	64	3	0	31	1.11
18356325--18356766	149	3.0	148	89	3	647	37	24	13	24	1.91
18358695--18358719	10	2.5	10	100	0	50	8	40	8	44	1.63
18359341--18359397	20	2.8	20	89	5	78	61	8	1	28	1.36
18360558--18360611	28	1.9	28	82	14	67	50	0	3	46	1.19
18361287--18361388	50	2.0	50	94	0	177	19	6	27	46	1.75
18362380--18362406	2	13.5	2	100	0	54	51	0	0	48	1.00
18363698--18363773	28	2.8	27	76	7	82	43	0	0	56	0.99
18363750--18363800	23	2.2	23	89	0	75	41	5	0	52	1.25
18366006--18366061	24	2.4	22	85	11	76	55	0	0	44	0.99
18366008--18366061	23	2.3	23	90	3	81	55	0	0	44	0.99
18367406--18367443	13	2.8	13	92	4	58	63	0	0	36	0.95
18367386--18367450	13	4.8	13	77	11	51	52	0	0	47	1.00
18367941--18368006	28	2.3	28	80	17	73	42	0	4	53	1.21
18367941--18368009	29	2.4	28	77	18	70	42	0	4	53	1.20
18368409--18368442	2	18.0	2	88	11	54	47	0	0	52	1.00
18376847--18376889	19	2.3	19	87	0	59	32	2	2	62	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18376847--18376889	18	2.4	19	84	7	54	32	2	2	62	1.20
18376934--18376984	15	3.3	15	80	2	57	68	0	0	31	0.90
18376934--18376983	16	3.2	16	85	2	66	70	0	0	30	0.88
18376909--18376962	22	2.5	22	79	14	58	55	1	0	42	1.10
18377629--18377673	22	2.1	21	84	12	56	0	51	2	46	1.13
18379834--18379858	2	12.5	2	100	0	50	0	48	0	52	1.00
18382399--18382436	18	2.1	18	85	9	51	78	0	7	13	0.94
18386629--18386674	24	1.9	24	90	0	74	56	0	0	43	0.99
18388125--18388164	17	2.4	17	88	12	57	22	5	0	72	1.04
18393369--18393411	15	2.9	14	86	6	59	39	0	2	58	1.11
18393389--18393433	23	2.0	23	83	12	58	40	0	4	55	1.20
18394174--18394199	7	3.7	7	100	0	52	53	30	15	0	1.42
18397806--18397905	16	6.5	15	75	10	94	19	1	32	48	1.56
18398990--18399031	21	2.0	22	81	13	52	11	4	9	73	1.22
18399266--18399306	20	2.0	20	90	9	66	17	7	4	70	1.28
18399277--18399339	29	2.3	26	81	10	63	30	1	1	66	1.10
18399519--18399601	37	2.2	38	78	4	96	50	15	21	12	1.76
18401863--18401906	11	3.9	11	83	13	54	11	2	4	81	0.92
18401863--18401907	24	1.9	24	86	4	65	11	2	4	82	0.91
18402413--18403018	198	2.9	206	83	9	778	36	13	13	36	1.84
18402179--18403018	421	2.0	421	93	1	1425	36	12	14	36	1.84
18402615--18403038	223	1.9	223	93	0	722	36	12	15	36	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18408969--18409006	16	2.4	16	91	4	60	18	0	28	52	1.45
18409538--18409564	12	2.2	12	100	0	54	22	7	40	29	1.81
18410372--18410403	15	2.1	15	94	0	55	40	0	0	59	0.97
18410381--18410434	22	2.5	21	80	14	56	42	1	1	53	1.22
18411715--18411739	11	2.3	11	100	0	50	52	0	8	40	1.31
18414297--18414340	2	22.0	2	100	0	88	0	50	0	50	1.00
18423165--18423216	6	9.7	6	80	16	53	69	0	0	30	0.89
18423165--18423216	16	3.2	16	76	17	54	69	0	0	30	0.89
18423168--18423200	10	3.3	10	87	12	50	72	0	0	27	0.85
18423165--18423222	26	2.2	26	90	0	89	67	0	0	32	0.91
18423163--18423222	21	2.8	20	75	9	57	65	0	0	35	0.93
18424223--18424268	21	2.1	22	84	4	58	39	0	0	60	0.97
18425385--18425423	2	19.5	2	94	0	69	53	0	0	46	1.00
18426837--18426861	2	12.5	2	100	0	50	52	0	0	48	1.00
18426981--18427012	16	2.0	16	93	0	55	53	12	0	34	1.39
18433816--18433901	42	2.0	42	95	0	154	20	17	26	34	1.95
18434358--18434382	13	1.9	13	100	0	50	48	4	0	48	1.20
18437810--18437847	15	2.6	15	83	4	51	0	23	5	71	1.07
18439838--18439863	12	2.2	12	100	0	52	50	0	15	34	1.45
18443642--18443678	13	2.8	13	91	4	56	2	2	16	78	0.98
18446530--18446592	26	2.8	24	81	18	73	42	0	0	57	0.99
18458602--18458630	11	2.7	11	94	5	51	93	0	6	0	0.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18463006--18463038	18	1.9	17	88	11	50	72	0	9	18	1.10
18466541--18466618	14	5.2	14	71	14	57	47	1	1	50	1.17
18466621--18466669	25	2.0	25	84	8	64	46	2	2	48	1.25
18466650--18466699	17	2.7	20	82	14	54	48	0	0	52	1.00
18466693--18466785	48	1.9	48	82	4	116	60	3	0	36	1.13
18467906--18467981	37	2.0	38	89	2	118	35	15	26	22	1.94
18471156--18471185	15	2.0	15	93	0	51	43	0	40	16	1.48
18471488--18471545	24	2.4	23	81	16	64	32	0	41	25	1.56
18471497--18471545	24	2.1	24	88	3	73	32	0	42	24	1.55
18471763--18471859	48	2.0	48	93	0	167	25	21	10	42	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105