genome.fa.s135.2.7.7.80.10.50.1000.99.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  99  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17898361--17898662	162	1.9	164	90	2	493	40	3	8	47	1.50
17906295--17906320	3	8.7	3	100	0	52	30	0	0	69	0.89
17916458--17916547	41	2.2	41	89	2	135	46	13	15	24	1.82
17934816--17934869	22	2.5	22	87	6	83	55	1	0	42	1.10
17936575--17936612	19	2.0	19	100	0	76	26	5	10	57	1.53
17941749--17941811	31	2.0	31	100	0	126	55	6	3	34	1.41
17950296--17950334	20	2.0	20	84	0	51	46	12	2	38	1.56
17950992--17951089	48	2.0	48	100	0	196	33	16	18	31	1.93
17952871--17952898	2	14.0	2	100	0	56	50	0	0	50	1.00
17960960--17960991	6	5.3	6	92	0	55	46	15	37	0	1.46
17965565--17965602	2	19.0	2	94	0	67	50	0	2	47	1.15
17970420--17970540	2	61.5	2	77	9	124	46	2	4	47	1.35
17970998--17971029	2	16.0	2	93	0	55	53	0	0	46	1.00
17970994--17971026	10	3.3	10	95	0	57	57	0	0	42	0.98
17978972--17979007	18	2.1	16	90	10	54	16	5	5	72	1.23
17981682--17981712	16	1.9	16	93	0	53	38	3	9	48	1.52
17983272--17983313	18	2.3	19	79	4	50	54	0	2	42	1.13
17982957--17983474	282	1.8	281	94	0	928	44	7	2	45	1.43
17983498--17983548	23	2.3	21	77	9	57	43	5	1	49	1.38
17984273--17984503	127	1.8	128	82	2	304	42	7	3	46	1.50
17984273--17984506	126	1.8	128	83	3	312	42	7	3	46	1.51
17984757--17984823	27	2.4	28	73	9	66	34	2	4	58	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17984828--17985063	127	1.9	123	83	8	307	47	5	1	45	1.34
17985014--17985090	22	3.5	22	74	11	61	42	3	1	51	1.28
17986375--17986410	15	2.4	15	90	9	56	75	0	0	25	0.81
17986381--17986414	15	2.2	16	89	5	52	76	0	0	23	0.79
17993719--17993821	51	2.0	51	86	3	145	41	2	12	42	1.58
17995932--17995976	3	15.3	3	95	4	83	33	0	0	66	0.92
17998001--17998071	35	2.0	35	86	5	99	30	11	22	35	1.89
17999038--17999078	3	13.7	3	100	0	82	34	0	0	65	0.93
18000834--18000865	14	2.2	15	94	5	57	28	0	28	43	1.55
18001324--18001365	22	1.9	22	85	0	57	54	16	0	28	1.42
18001741--18001780	21	1.9	21	84	0	53	62	12	2	22	1.42
18001908--18001948	20	2.0	20	86	9	57	51	2	0	46	1.14
18002975--18003018	19	2.2	20	84	8	63	34	4	11	50	1.59
18004726--18004764	7	5.6	7	85	11	53	0	0	12	87	0.55
18004726--18004764	15	2.8	14	84	11	53	0	0	12	87	0.55
18005265--18005306	15	2.7	15	82	10	50	47	0	2	50	1.14
18005249--18005337	19	4.7	19	64	18	51	50	0	2	47	1.13
18011137--18011185	23	2.1	23	100	0	98	34	20	8	36	1.82
18017031--18017085	18	2.9	18	81	5	56	69	0	3	27	1.05
18017105--18017156	27	2.0	25	82	10	61	40	3	3	51	1.38
18019281--18019316	16	2.1	18	90	10	58	63	2	5	27	1.30
18022366--18022408	3	14.3	3	100	0	86	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18024124--18024191	28	2.3	29	79	16	70	52	0	1	45	1.09
18024095--18024218	63	2.0	60	80	11	137	53	0	0	45	1.11
18024134--18024234	32	2.9	35	76	14	95	50	0	0	48	1.07
18024175--18024241	32	2.1	32	82	0	80	55	1	0	43	1.09
18024512--18024537	10	2.6	10	100	0	52	26	0	11	61	1.30
18024912--18024939	2	14.0	2	100	0	56	50	0	0	50	1.00
18030323--18030423	39	2.6	37	74	9	94	51	4	1	41	1.35
18030982--18031014	2	16.5	2	100	0	66	0	48	0	51	1.00
18031733--18031836	10	11.2	9	71	19	65	70	1	4	23	1.17
18037183--18037221	8	4.9	8	93	0	60	66	0	7	25	1.18
18037187--18037221	12	2.9	12	91	0	61	68	0	5	25	1.11
18037187--18037217	4	7.8	4	92	0	53	70	0	3	25	1.02
18045029--18045063	3	11.7	3	100	0	70	65	0	0	34	0.93
18045838--18045891	27	2.0	27	92	0	90	33	11	11	44	1.75
18045841--18045899	27	2.2	27	84	0	73	35	11	8	44	1.72
18046008--18046037	10	2.8	11	90	10	53	76	0	6	16	0.99
18047239--18047676	59	7.5	58	75	11	256	47	4	8	39	1.54
18047280--18047672	59	6.7	58	77	10	331	48	4	8	39	1.53
18047490--18047515	11	2.4	11	100	0	52	61	0	0	38	0.96
18047323--18047676	174	2.0	175	83	8	443	48	4	8	39	1.53
18047255--18047693	118	3.8	115	76	11	319	48	4	8	38	1.54
18050612--18050653	2	21.5	2	85	4	59	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18051471--18051524	17	3.1	17	73	5	54	57	0	0	42	0.98
18053645--18053683	18	2.1	19	90	4	62	43	0	0	56	0.99
18060552--18060589	17	2.3	18	82	17	55	23	13	21	42	1.88
18066534--18066617	43	2.0	43	90	4	134	30	15	10	42	1.81
18082146--18082170	13	1.9	13	100	0	50	72	0	24	4	1.02
18095790--18095831	14	2.9	15	86	13	61	33	0	0	66	0.92
18095790--18095842	14	3.4	15	75	25	56	33	0	0	66	0.92
18106965--18107147	66	2.8	64	76	13	183	34	15	14	36	1.87
18107065--18107217	44	3.5	44	77	8	134	31	17	15	35	1.91
18107093--18107299	44	4.7	44	73	12	140	32	18	15	33	1.93
18106965--18107330	22	16.8	21	67	16	104	33	18	14	33	1.91
18118650--18118705	29	1.9	29	85	7	78	35	0	8	55	1.31
18130415--18130463	22	2.2	22	81	3	53	53	4	2	40	1.32
18131476--18131500	2	12.5	2	100	0	50	52	0	0	48	1.00
18135679--18135722	22	2.0	22	100	0	88	18	18	13	50	1.79
18139189--18139214	13	2.0	13	100	0	52	53	0	46	0	1.00
18149566--18149626	31	2.0	31	83	0	77	50	0	0	49	1.00
18149567--18149635	35	2.0	34	83	8	86	50	0	0	49	1.00
18149573--18149640	31	2.2	31	78	5	75	52	0	0	47	1.00
18149677--18149739	24	2.7	23	76	7	65	42	0	0	57	0.99
18157790--18157836	22	2.2	21	85	11	60	46	0	0	53	1.00
18168065--18168113	24	2.1	24	88	11	75	61	0	0	38	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18172289--18172394	56	1.9	56	84	3	142	49	0	0	50	1.00
18172349--18172402	22	2.5	21	77	19	58	53	0	0	46	1.00
18172360--18172403	22	1.9	24	86	9	65	52	0	0	47	1.00
18172436--18172495	32	1.9	31	89	3	93	50	5	3	41	1.41
18177264--18177328	32	2.0	32	96	0	121	26	13	27	32	1.94
18178099--18178143	18	2.4	18	81	7	54	71	6	17	4	1.25
18219916--18219963	22	2.2	22	92	3	80	45	12	10	31	1.76
18223610--18223704	23	4.1	23	86	4	111	42	16	24	16	1.89
18223611--18223695	23	3.6	23	88	3	116	41	18	25	14	1.88
18223844--18223887	22	2.0	22	90	0	70	43	13	9	34	1.76
18239333--18239532	95	2.1	97	91	2	332	39	5	2	53	1.38
18239333--18239560	95	2.4	95	85	5	237	39	5	2	52	1.39
18244236--18244270	5	6.8	5	93	3	52	0	34	0	65	0.93
18244297--18244343	10	4.7	10	79	10	51	0	29	4	65	1.11
18245519--18245555	14	2.6	14	86	0	56	43	0	0	56	0.99
18246025--18246104	18	4.4	19	73	16	64	51	0	0	48	1.00
18246026--18246103	36	2.2	35	82	13	88	52	0	0	47	1.00
18250283--18250307	2	12.5	2	100	0	50	52	0	0	48	1.00
18257891--18257918	12	2.3	12	100	0	56	57	0	0	42	0.99
18259104--18259136	16	2.1	16	100	0	66	27	24	0	48	1.51
18263975--18264002	13	2.2	13	100	0	56	46	32	14	7	1.71
18267761--18267869	36	3.0	36	74	10	114	37	13	28	20	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18270675--18270728	9	6.0	9	75	0	54	20	37	7	35	1.81
18275659--18275689	11	2.8	11	90	0	53	48	19	25	6	1.72
18277318--18277352	17	2.1	17	88	0	52	42	14	25	17	1.86
18279742--18279780	13	3.2	12	86	10	53	43	0	0	56	0.99
18279924--18279957	17	2.0	17	88	0	50	0	8	2	88	0.62
18281423--18281496	30	2.5	29	82	2	94	52	5	10	31	1.59
18283956--18284018	20	3.2	19	65	8	54	34	14	4	46	1.66
18284052--18284092	2	20.5	2	94	0	73	46	0	2	51	1.14
18285202--18285227	13	2.0	13	100	0	52	23	15	15	46	1.83
18287440--18287493	22	2.5	21	79	5	63	59	0	0	40	0.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105