Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  96  of  105  ( 12570 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17116218--17116265
19
2.6
19
87
9
64
60
12
2
25
1.43
17118665--17118724
25
2.6
22
84
7
66
31
5
1
61
1.27
17118688--17118722
12
3.1
12
84
16
56
25
5
0
68
1.11
17120202--17120236
9
3.9
9
96
0
61
11
51
11
25
1.71
17121552--17121627
25
3.2
25
85
10
90
46
0
0
53
1.00
17121586--17121633
20
2.3
22
92
7
82
45
0
0
54
0.99
17121648--17121708
20
2.8
21
85
12
79
49
0
0
50
1.00
17121648--17121698
20
2.5
20
93
6
84
49
0
0
50
1.00
17122257--17122301
14
3.3
14
79
14
58
44
0
0
55
0.99
17122258--17122321
28
2.2
29
81
8
69
37
3
1
57
1.24
17126114--17126199
16
5.5
15
70
19
50
25
9
3
61
1.42
17128329--17128433
51
2.1
51
94
0
183
14
47
7
30
1.72
17128401--17128438
18
2.1
18
90
0
58
7
55
5
31
1.51
17129423--17129496
13
5.9
13
68
17
50
52
1
1
44
1.17
17129421--17129499
37
2.1
38
81
11
92
54
1
1
43
1.16
17131302--17131347
22
2.1
22
92
4
76
45
2
0
52
1.13
17131615--17131651
15
2.5
15
90
0
56
45
0
0
54
1.00
17133739--17133768
13
2.2
14
94
5
53
33
0
6
60
1.23
17133737--17133770
14
2.4
15
85
14
54
35
0
5
58
1.22
17134499--17134547
8
6.2
8
79
11
57
40
0
0
59
0.98
17134511--17134565
16
3.6
16
80
11
62
47
0
0
52
1.00
17144098--17144140
17
2.5
17
85
11
52
51
16
0
32
1.45
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17147522--17147562
19
2.1
20
86
4
57
53
14
9
21
1.70
17151180--17151214
18
1.9
18
94
0
61
0
11
11
77
1.00
17151610--17151673
26
2.5
25
87
7
101
51
1
0
46
1.10
17151642--17151681
15
2.6
16
84
4
55
52
2
0
45
1.14
17163400--17163433
17
1.9
18
88
5
52
29
0
0
70
0.87
17163990--17164029
14
2.9
13
85
10
53
50
0
0
50
1.00
17177331--17177357
2
13.5
2
100
0
54
51
0
0
48
1.00
17177357--17177400
2
22.0
2
90
0
70
54
0
45
0
0.99
17189690--17189723
2
17.0
2
100
0
68
50
0
50
0
1.00
17194745--17194778
18
1.9
17
88
5
50
82
0
5
11
0.83
17195128--17195244
20
5.7
20
81
8
112
47
30
4
17
1.66
17195256--17195286
15
2.1
15
93
0
53
45
25
6
22
1.76
17196183--17196231
12
4.1
12
81
0
62
2
44
4
48
1.33
17196287--17196393
6
17.8
6
96
0
169
15
21
0
62
1.32
17198480--17198518
18
2.2
18
85
0
51
48
0
0
51
1.00
17207870--17207903
8
4.2
8
96
0
59
61
14
0
23
1.33
17214065--17214109
22
2.0
22
100
0
90
46
4
22
26
1.70
17230813--17230859
17
2.8
17
83
6
51
8
12
2
76
1.09
17231767--17231815
22
2.2
22
82
13
57
14
0
8
77
0.98
17231841--17231868
9
3.1
9
100
0
56
78
0
0
21
0.75
17232032--17232061
15
1.9
16
93
6
53
80
0
3
16
0.85
17232087--17232137
25
2.0
26
81
11
61
45
7
9
37
1.67
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17232517--17232550
16
2.1
16
88
0
50
73
0
5
20
1.04
17238514--17238609
10
9.5
10
70
18
65
80
0
15
4
0.86
17238515--17238631
31
3.6
31
78
17
114
79
0
15
5
0.90
17238514--17238629
18
6.9
17
76
18
95
80
0
14
5
0.88
17238513--17238629
50
2.4
50
80
16
145
79
0
15
5
0.90
17238511--17238631
27
4.5
27
72
14
97
78
0
15
5
0.93
17240248--17240348
41
2.4
42
86
6
143
26
11
16
44
1.83
17240332--17240483
44
3.4
43
79
11
123
21
13
18
46
1.84
17240377--17240761
44
8.9
43
79
5
366
24
13
18
43
1.86
17240380--17240719
130
2.6
129
83
6
400
24
12
19
44
1.85
17243655--17243701
14
3.0
15
77
20
51
51
2
0
46
1.13
17244741--17244787
14
3.0
15
77
20
51
51
4
0
44
1.21
17255521--17255554
14
2.5
13
86
9
50
47
0
0
52
1.00
17256902--17256953
26
2.0
26
96
0
95
30
13
9
46
1.75
17258755--17258784
3
10.0
3
100
0
60
66
0
0
33
0.92
17258783--17258823
3
13.7
3
100
0
82
34
0
0
65
0.93
17261004--17261497
66
7.4
66
76
4
352
29
22
26
21
1.99
17260967--17261261
135
2.2
135
82
1
353
28
22
28
20
1.98
17262912--17262949
19
2.0
19
100
0
76
15
10
21
52
1.72
17267037--17267081
17
2.5
17
82
13
54
37
0
0
62
0.96
17270457--17270493
14
2.5
15
91
4
58
78
5
0
16
0.93
17270847--17270892
13
3.8
12
85
11
58
32
0
2
65
1.05
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17271843--17271900
15
3.8
15
75
4
62
41
1
0
56
1.09
17271820--17271919
40
2.4
42
81
6
107
49
1
0
50
1.07
17271846--17271914
31
2.3
30
83
11
95
44
1
0
53
1.09
17271834--17271919
42
2.1
40
86
4
118
50
1
0
48
1.08
17271939--17271986
25
1.9
25
91
0
78
58
8
2
31
1.39
17271965--17272009
18
2.5
19
82
13
51
60
2
0
37
1.09
17272011--17272109
29
3.2
28
70
18
72
61
0
0
38
0.96
17274385--17274473
29
3.2
29
76
12
80
48
1
0
50
1.08
17275563--17275601
17
2.4
17
86
4
53
56
0
0
43
0.99
17276509--17276548
19
2.1
19
85
4
53
55
2
7
35
1.42
17276522--17276560
19
2.0
20
85
10
53
61
5
0
33
1.18
17279068--17279112
21
2.1
22
87
4
65
75
4
0
20
0.97
17283901--17283949
23
2.1
23
92
0
80
44
8
0
46
1.33
17285242--17285268
2
13.5
2
100
0
54
48
0
0
51
1.00
17286840--17286874
17
2.1
17
89
10
54
48
0
0
51
1.00
17298465--17298617
59
2.5
59
82
5
155
43
2
11
43
1.54
17298692--17298820
57
2.3
57
81
9
149
41
3
13
41
1.62
17303411--17303532
61
2.0
61
96
0
226
46
22
14
16
1.83
17310057--17310083
2
13.5
2
100
0
54
51
0
0
48
1.00
17312681--17312722
22
1.9
22
85
9
59
35
7
11
45
1.69
17312841--17312877
18
2.0
19
94
5
67
48
0
0
51
1.00
17315722--17315793
37
2.0
37
97
2
137
48
6
2
41
1.44
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17328419--17328582
85
1.9
85
91
0
265
35
12
10
40
1.79
17329585--17329622
15
2.4
17
86
8
53
36
0
0
63
0.95
17339401--17339468
29
2.3
30
85
12
95
41
1
0
57
1.08
17339401--17339470
28
2.5
28
81
6
81
40
1
0
58
1.07
17345454--17345480
10
2.7
10
100
0
54
48
0
0
51
1.00
17345506--17345594
29
3.2
30
75
13
84
47
2
0
50
1.13
17349876--17349908
9
3.8
9
92
4
50
0
0
39
60
0.97
17351458--17351484
2
13.5
2
100
0
54
51
0
0
48
1.00
17351927--17351981
22
2.7
21
78
10
60
25
1
3
69
1.15
17351927--17351989
22
2.9
22
75
13
58
23
1
4
69
1.16
17353430--17353461
14
2.4
14
94
5
57
68
0
0
31
0.90
17353438--17353479
18
2.3
19
88
12
61
66
0
2
30
1.04
17354161--17354212
26
2.0
26
100
0
104
65
3
11
19
1.40
17354168--17354231
15
4.5
15
75
15
73
65
1
9
23
1.30
17354382--17354418
18
2.1
18
94
0
65
35
5
13
45
1.66
17355832--17356052
58
3.8
56
78
11
248
48
7
8
35
1.61
17355805--17356044
118
2.0
118
99
0
471
50
7
9
33
1.62
17359725--17359756
16
2.0
16
93
0
55
84
0
9
6
0.78
17360121--17360174
18
3.0
18
78
10
65
77
1
14
5
1.03
17360121--17360187
18
4.0
16
81
12
64
79
1
13
5
0.99
17361291--17361410
21
6.0
20
71
16
88
38
11
17
32
1.86
17361351--17361406
20
2.7
21
94
2
96
39
12
14
33
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17361469--17361740
114
2.4
114
91
1
429
33
14
16
35
1.90
17362438--17362727
121
2.4
121
92
2
476
34
12
8
45
1.71
17362837--17362868
4
7.8
4
93
6
55
75
0
0
25
0.81
17362840--17362867
13
2.2
13
100
0
56
78
0
0
21
0.75
17363317--17363368
24
2.2
22
75
18
52
50
15
1
32
1.55
17363758--17363827
25
2.9
24
80
14
65
64
2
0
32
1.08
17363751--17363811
22
2.7
22
82
7
70
65
1
0
32
1.02
17363756--17363829
26
2.8
26
76
15
71
64
2
0
32
1.07
17364106--17364136
15
2.1
14
94
5
53
0
0
9
90
0.46
17364150--17364252
42
2.4
43
80
3
118
40
23
13
22
1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105