genome.fa.s135.2.7.7.80.10.50.1000.19.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  19  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3963761--3963818	21	2.8	21	81	0	71	41	18	6	32	1.78
3963783--3963827	21	2.1	21	83	0	54	51	13	4	31	1.61
3965016--3965044	10	2.9	10	100	0	58	6	10	0	82	0.83
3965016--3965059	20	2.1	20	83	8	52	9	15	0	75	1.05
3969310--3969348	9	4.4	9	87	3	53	15	0	2	82	0.79
3971195--3971274	25	3.4	24	68	16	69	57	10	1	31	1.39
3971184--3971270	45	1.9	45	90	0	138	56	10	1	32	1.41
3976874--3976929	27	2.1	27	89	0	85	46	14	25	14	1.82
3977543--3977568	7	3.7	7	100	0	52	30	11	42	15	1.82
3980066--3980121	14	3.8	14	76	17	51	48	5	0	46	1.25
3982449--3982494	19	2.4	19	85	7	58	39	2	0	58	1.10
3984660--3984694	13	2.7	13	90	0	52	80	2	2	14	0.95
3989301--3989334	18	2.0	16	88	11	50	47	5	5	41	1.52
3992590--3992615	7	3.7	7	100	0	52	30	11	42	15	1.82
3993883--3993922	19	2.1	19	86	9	55	12	15	2	70	1.28
3993885--3993922	18	2.1	19	85	5	51	10	15	2	71	1.25
3995115--3995170	14	3.8	14	76	17	51	48	5	0	46	1.25
4004219--4004252	2	17.0	2	93	0	59	50	0	2	47	1.16
4005377--4005441	24	2.5	26	76	16	73	49	1	4	44	1.32
4020069--4020093	12	2.1	12	100	0	50	28	16	16	40	1.89
4023302--4023398	37	2.6	37	85	4	106	56	7	6	29	1.51
4023724--4023766	19	2.2	19	83	4	50	60	9	0	30	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4024985--4025042	30	1.9	30	82	6	73	77	3	6	12	1.09
4026029--4026061	13	2.5	13	90	0	57	75	0	3	21	0.93
4026335--4026447	34	3.3	35	79	8	126	40	13	7	38	1.74
4028369--4028422	5	10.6	5	82	4	54	1	24	0	74	0.92
4028370--4028422	20	2.6	20	84	3	70	1	24	0	73	0.93
4028370--4028422	25	2.1	25	89	0	79	1	24	0	73	0.93
4038941--4038984	21	2.0	21	82	4	52	20	20	9	50	1.75
4047533--4047582	22	2.5	20	83	9	57	16	22	34	28	1.95
4052151--4052194	12	3.7	12	87	0	61	59	0	0	40	0.98
4052602--4052672	22	3.5	20	81	12	83	23	1	1	73	1.00
4052932--4052975	19	2.3	20	80	11	56	70	0	11	18	1.16
4054773--4054806	10	3.4	10	95	0	59	61	14	0	23	1.33
4055982--4056038	27	2.1	27	90	6	89	49	1	0	49	1.11
4055959--4056036	27	3.1	23	75	21	68	46	2	1	50	1.23
4056005--4056084	37	2.3	35	80	10	92	47	1	3	47	1.28
4056222--4056315	21	4.5	22	72	16	67	54	4	1	40	1.27
4056245--4056324	21	3.8	21	73	22	62	52	3	1	42	1.27
4056255--4056337	42	2.0	43	85	7	116	50	2	1	45	1.22
4056279--4056355	28	2.6	30	68	10	70	55	1	1	41	1.16
4056373--4056418	19	2.4	19	85	7	58	43	0	0	56	0.99
4056441--4056504	26	2.5	26	80	9	78	50	4	1	43	1.32
4060855--4062057	598	2.0	598	98	0	2334	45	12	14	27	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4063593--4063617	2	12.5	2	100	0	50	48	0	0	52	1.00
4064116--4064159	20	2.2	20	83	4	52	43	4	2	50	1.35
4076805--4076830	2	13.0	2	100	0	52	50	0	0	50	1.00
4079302--4079337	18	2.0	18	89	10	56	50	8	0	41	1.33
4079415--4079444	3	10.0	3	100	0	60	33	0	0	66	0.92
4081604--4081635	2	16.0	2	100	0	64	50	0	50	0	1.00
4088844--4088890	19	2.4	18	80	19	51	29	0	4	65	1.11
4092054--4092088	17	1.9	19	88	11	56	40	0	0	60	0.97
4097195--4097239	17	2.8	15	81	15	54	55	2	0	42	1.12
4098553--4098602	24	2.0	26	85	11	70	54	12	2	32	1.49
4099341--4099370	12	2.6	12	94	5	53	50	20	6	23	1.71
4099357--4099891	275	1.9	279	88	3	821	42	5	8	43	1.57
4100218--4100271	7	7.6	7	84	15	67	83	3	1	11	0.85
4100573--4100641	31	2.2	31	84	0	84	23	8	17	50	1.73
4103790--4103832	18	2.6	17	85	10	54	34	2	20	41	1.65
4103824--4103887	18	3.6	18	76	4	58	31	4	28	35	1.78
4112447--4112552	54	1.9	55	88	1	160	32	7	30	30	1.85
4114180--4114245	27	2.5	26	90	9	107	40	12	15	31	1.83
4116152--4116177	12	2.2	12	100	0	52	30	46	7	15	1.74
4126157--4126287	5	26.2	5	72	16	76	30	1	6	61	1.31
4126191--4126314	3	46.3	3	67	24	55	29	1	4	63	1.24
4126188--4126313	8	15.5	8	67	21	50	30	1	4	63	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4126188--4126313	21	6.0	21	72	16	91	30	1	4	63	1.24
4126265--4126306	14	3.1	14	82	3	50	23	0	2	73	0.94
4126263--4126316	5	10.2	5	78	11	54	24	0	1	74	0.92
4127065--4127135	18	3.9	18	75	12	65	16	4	2	76	1.07
4128036--4128070	15	2.4	15	90	4	54	5	22	0	71	1.07
4129230--4129278	21	2.3	21	100	0	98	28	12	6	53	1.62
4132875--4133091	55	3.8	55	76	7	157	20	23	15	40	1.90
4132906--4133113	116	1.8	115	82	3	274	20	23	16	39	1.91
4133560--4133729	5	33.2	5	78	14	109	33	1	3	61	1.24
4133550--4133731	26	7.0	25	68	20	97	33	2	3	60	1.27
4133560--4133730	3	63.3	3	70	22	103	33	1	3	61	1.23
4133569--4133719	26	5.8	29	73	17	109	34	1	3	59	1.27
4133560--4133725	8	20.5	8	70	15	65	33	1	3	60	1.24
4134511--4134553	21	2.0	21	86	8	61	23	0	2	74	0.93
4134512--4134544	16	2.0	17	94	5	59	24	0	0	75	0.80
4134706--4134762	25	2.3	26	79	11	66	68	5	0	26	1.11
4137680--4137726	24	2.0	24	83	8	60	55	0	2	42	1.12
4139506--4139780	137	2.0	137	98	0	532	21	12	20	45	1.83
4143516--4143559	23	1.9	23	90	0	70	34	2	4	59	1.30
4146466--4146523	3	19.3	3	96	0	107	63	1	0	34	1.04
4146726--4146751	5	5.2	5	100	0	52	76	0	0	23	0.78
4147229--4147268	21	1.9	21	89	0	62	35	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4152923--4152971	23	2.2	21	82	10	62	26	14	6	53	1.64
4152928--4152972	23	2.0	23	91	4	74	28	15	6	48	1.70
4154408--4154460	24	2.2	24	82	0	61	24	49	9	16	1.76
4155509--4155544	13	2.8	13	86	0	54	47	2	0	50	1.15
4155457--4155543	44	2.0	43	81	2	102	40	5	3	50	1.43
4155875--4155901	2	13.5	2	100	0	54	51	0	0	48	1.00
4159676--4159733	18	3.4	18	79	9	61	39	0	0	60	0.97
4165374--4165412	17	2.4	17	82	4	53	48	0	5	46	1.24
4167531--4167584	29	1.9	27	85	7	72	46	9	7	37	1.64
4167683--4167728	24	1.9	24	86	8	67	60	2	0	36	1.09
4167903--4167945	2	21.5	2	80	0	50	46	2	6	44	1.43
4167904--4167945	12	3.5	12	90	0	57	47	2	7	42	1.43
4168454--4168522	29	2.4	28	77	13	77	55	2	5	36	1.39
4169670--4169756	29	2.9	30	84	6	97	36	3	3	56	1.33
4172950--4172994	23	2.1	21	88	12	65	66	8	0	24	1.20
4174629--4174702	39	1.9	39	91	5	125	39	14	9	36	1.79
4177850--4177954	54	1.9	55	92	1	176	29	7	32	30	1.85
4179569--4179610	21	2.0	21	90	4	68	42	14	9	33	1.78
4192489--4192537	20	2.6	20	78	12	59	32	2	0	65	1.04
4193928--4193965	17	2.2	17	95	0	67	13	0	13	73	1.09
4193936--4193987	24	2.2	24	83	10	63	13	0	11	75	1.06
4194222--4194786	48	11.7	49	81	7	611	36	22	13	27	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4194222--4194786	97	5.8	96	82	6	599	36	22	13	27	1.91
4194222--4194786	146	3.9	144	85	5	697	36	22	13	27	1.91
4198740--4198781	18	2.3	18	84	8	50	71	7	9	11	1.31
4209170--4209218	23	2.2	21	82	10	62	26	14	6	53	1.64
4209175--4209219	23	2.0	23	91	4	74	28	15	6	48	1.70
4211759--4211794	13	2.8	13	86	0	54	47	2	0	50	1.15
4215895--4215952	18	3.4	18	79	9	61	39	0	0	60	0.97
4216128--4216194	31	2.2	30	82	12	75	37	5	10	46	1.63
4220322--4220371	24	2.1	23	82	10	57	46	10	10	34	1.71
4224079--4224159	30	2.6	31	71	15	76	39	6	4	49	1.49

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105