genome.fa.s135.2.7.7.80.10.50.1000.31.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  31  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6208888--6208950	18	3.4	18	80	2	72	38	1	3	57	1.24
6208922--6208958	19	1.9	19	88	0	56	43	0	2	54	1.14
6210569--6210622	19	2.9	19	76	13	58	40	0	3	55	1.17
6211184--6211212	15	1.9	15	100	0	58	34	0	3	62	1.12
6211183--6211219	15	2.4	15	86	4	56	40	0	2	56	1.13
6215449--6215493	23	2.0	23	86	8	65	22	4	4	68	1.25
6215712--6215893	65	2.7	66	75	12	167	46	5	7	40	1.56
6230597--6230628	15	2.0	17	88	11	50	65	0	0	34	0.93
6230805--6231079	137	2.0	136	92	0	451	44	9	2	43	1.48
6232297--6232377	36	2.3	33	78	19	83	51	12	7	28	1.66
6232303--6232387	19	4.3	20	75	15	79	48	12	9	29	1.73
6232513--6232569	13	4.3	13	82	6	62	73	1	0	24	0.92
6234145--6234188	18	2.5	17	82	7	61	43	18	9	29	1.80
6234272--6234322	17	3.0	17	72	11	50	39	19	11	29	1.87
6234238--6234406	86	1.9	87	84	4	225	34	15	16	32	1.91
6234616--6234661	17	2.7	18	74	12	53	36	13	13	36	1.83
6234754--6234804	21	2.4	21	80	0	57	47	7	9	35	1.66
6234737--6234785	21	2.2	23	85	7	66	46	10	8	34	1.67
6234921--6235174	46	5.5	45	70	13	160	44	15	7	33	1.74
6234943--6235202	92	2.8	93	84	6	321	43	15	8	33	1.76
6243628--6243656	3	9.7	3	100	0	58	31	0	0	68	0.89
6243663--6243724	20	3.0	21	68	13	56	6	19	0	74	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6243884--6243942	23	2.6	23	97	0	109	30	20	23	25	1.98
6245309--6245339	12	2.6	12	94	0	53	74	0	0	25	0.82
6249310--6249391	42	2.0	42	92	0	137	29	26	15	28	1.96
6250177--6250271	47	2.0	47	100	0	190	44	21	18	15	1.87
6257139--6257268	51	2.6	50	85	4	156	30	13	20	36	1.90
6257522--6257584	3	21.3	3	96	3	119	31	0	0	68	0.90
6257621--6257667	14	3.2	14	85	11	51	2	23	0	74	0.93
6257883--6257920	19	2.0	20	89	5	60	78	7	7	5	1.07
6258744--6258768	13	1.9	13	100	0	50	64	4	0	32	1.12
6258934--6258980	23	2.2	20	85	14	58	68	4	0	27	1.08
6258932--6258982	19	2.5	19	81	12	57	64	3	0	31	1.11
6263607--6263735	62	2.1	62	85	2	170	34	10	18	35	1.86
6266702--6266749	21	2.3	21	85	3	71	50	4	0	45	1.21
6266678--6266746	21	3.2	21	80	10	70	50	4	2	42	1.37
6266687--6267013	9	33.8	9	65	18	81	54	7	2	36	1.40
6266687--6266792	21	5.4	19	72	13	65	50	4	2	42	1.38
6266678--6266839	11	15.8	10	67	15	66	50	6	3	40	1.43
6266833--6266875	19	2.3	19	88	8	61	69	2	0	27	1.00
6266924--6266994	20	3.7	18	81	10	72	61	7	1	29	1.30
6266924--6267018	29	3.2	30	84	10	99	60	5	1	33	1.26
6267162--6267196	15	2.2	16	95	5	63	68	8	0	22	1.16
6267182--6267262	19	4.3	18	80	12	83	59	1	4	34	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6267162--6267252	19	5.2	17	83	11	78	61	3	4	30	1.31
6267167--6267252	36	2.5	34	81	9	93	60	2	4	32	1.30
6267182--6267352	10	18.0	9	69	18	89	55	4	3	36	1.38
6267644--6267678	10	3.5	10	88	0	52	31	5	8	54	1.54
6267640--6267768	20	6.4	20	67	12	75	31	4	6	57	1.46
6268102--6268127	4	6.5	4	100	0	52	50	0	0	50	1.00
6273090--6273143	20	2.8	17	77	22	54	83	0	14	1	0.73
6273090--6273142	22	2.4	22	84	9	63	83	0	15	1	0.74
6273097--6273143	20	2.6	17	83	12	58	85	0	14	0	0.61
6273100--6273142	22	1.9	22	90	4	68	83	0	16	0	0.64
6273488--6273524	15	2.4	15	95	4	65	83	0	0	16	0.64
6273500--6273554	18	3.3	17	79	18	62	81	0	9	9	0.87
6274730--6274840	22	5.1	21	73	11	91	36	8	16	38	1.78
6274730--6274840	43	2.6	43	82	2	134	36	8	16	38	1.78
6274953--6275110	78	2.0	78	96	0	289	31	11	20	36	1.88
6275589--6275614	4	6.5	4	100	0	52	23	0	0	76	0.78
6275546--6275655	57	1.9	59	84	3	152	30	10	10	47	1.73
6275601--6275915	43	7.3	43	81	5	298	27	12	14	45	1.81
6275612--6275915	128	2.4	129	80	7	307	27	12	15	44	1.83
6276170--6276236	6	9.9	7	74	19	54	26	2	1	68	1.12
6276157--6276233	34	2.4	32	82	10	95	27	2	1	68	1.10
6276169--6276232	26	2.5	25	74	20	60	26	3	1	68	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6276156--6276235	37	2.2	37	82	8	92	27	2	1	68	1.10
6276732--6276770	19	2.1	19	90	9	62	66	0	33	0	0.92
6276732--6276770	17	2.1	20	86	13	57	66	0	33	0	0.92
6277503--6277613	55	2.0	55	80	3	125	56	7	12	23	1.60
6277511--6277693	53	3.4	54	79	10	178	54	8	10	27	1.63
6280790--6280840	19	2.7	19	82	8	59	17	11	19	50	1.76
6282546--6282608	12	4.8	12	73	17	54	31	1	4	61	1.26
6282546--6282608	13	4.8	13	76	14	51	31	1	4	61	1.26
6290771--6290807	11	3.5	11	88	7	58	5	5	8	81	0.99
6291195--6291231	19	1.9	19	88	0	56	2	16	2	78	0.98
6291211--6291247	16	2.1	18	85	14	51	8	13	8	70	1.34
6291348--6291379	15	2.1	15	94	0	55	0	9	3	87	0.64
6291372--6291411	11	3.6	11	83	10	55	5	12	0	82	0.82
6291358--6291411	12	4.6	12	81	11	67	3	12	0	83	0.78
6291361--6291411	22	2.3	22	90	6	77	3	13	0	82	0.81
6296634--6296666	16	2.1	16	94	0	57	21	6	0	72	1.05
6297719--6297771	28	2.0	26	85	7	70	33	13	11	41	1.80
6297995--6298067	29	2.5	30	79	2	76	46	6	0	46	1.29
6298066--6298131	20	3.4	18	74	12	51	51	6	0	42	1.26
6298053--6298102	9	5.1	10	78	7	50	42	4	0	54	1.19
6298190--6298241	24	2.3	21	83	9	59	61	3	0	34	1.14
6298292--6298369	20	4.1	18	76	15	68	50	5	0	44	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6298319--6298347	9	3.3	9	95	4	51	51	0	0	48	1.00
6298295--6298447	28	5.6	27	70	16	75	53	3	1	41	1.27
6298344--6298385	17	2.4	18	80	4	50	59	2	0	38	1.10
6298426--6298477	20	2.7	19	82	8	70	55	9	0	34	1.32
6298465--6298514	15	3.2	16	80	8	59	56	2	2	40	1.22
6298465--6298498	16	2.2	15	89	5	50	61	0	0	38	0.96
6298700--6298821	29	4.2	29	74	9	95	31	2	4	61	1.28
6298696--6299131	10	43.8	10	68	16	142	33	2	4	59	1.29
6298690--6298841	69	2.2	67	80	7	164	32	1	4	61	1.28
6298769--6298903	29	4.4	29	72	19	89	31	1	4	62	1.23
6298986--6299131	9	14.9	10	71	17	69	34	2	3	60	1.25
6299035--6299137	28	3.8	28	78	8	79	30	1	5	62	1.30
6300008--6300071	18	3.5	19	75	14	62	37	6	17	39	1.75
6304394--6304426	16	2.1	16	100	0	66	42	6	6	45	1.53
6305922--6306121	63	3.2	63	70	11	174	38	11	6	44	1.67
6305892--6306134	126	1.9	127	85	1	335	39	10	6	43	1.66
6306484--6306788	157	1.9	156	88	4	463	37	11	8	41	1.72
6306504--6306823	157	2.0	156	81	4	367	39	11	8	40	1.71
6308866--6308897	2	16.0	2	100	0	64	50	0	0	50	1.00
6309213--6309253	2	20.5	2	89	0	64	43	0	4	51	1.23
6309333--6309450	58	2.0	57	79	12	125	44	5	11	38	1.64
6309545--6309584	20	2.0	20	85	9	55	67	2	7	22	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6311673--6311711	19	2.0	20	90	5	62	12	2	0	84	0.72
6311716--6311746	3	10.3	3	100	0	62	32	0	0	67	0.91
6311931--6311974	20	2.3	20	84	7	56	18	4	6	70	1.27
6314598--6314665	30	2.3	29	85	12	93	63	0	0	36	0.95
6315776--6315823	19	2.6	19	75	15	55	35	0	0	64	0.94
6318044--6318070	12	2.2	12	100	0	54	59	22	0	18	1.38
6318514--6318552	2	19.5	2	100	0	78	51	0	48	0	1.00
6322232--6322311	39	2.0	40	92	2	135	37	23	8	30	1.85
6322811--6322856	24	1.9	24	82	8	58	41	2	2	54	1.25
6324093--6324141	2	24.5	2	82	0	62	51	8	0	40	1.32

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105