genome.fa.s135.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  6  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
818596--818644	18	2.7	18	74	3	53	57	0	0	42	0.99
818990--819042	25	2.1	25	85	0	70	39	16	22	20	1.92
824763--824797	16	2.2	16	94	0	61	28	0	5	65	1.15
825294--825382	44	2.0	44	93	0	151	35	12	10	41	1.76
827177--827210	2	17.0	2	100	0	68	50	0	0	50	1.00
829065--829120	26	2.1	27	86	3	78	42	21	12	23	1.86
834182--834225	2	22.0	2	80	0	52	50	4	2	43	1.35
834182--834225	14	3.1	14	90	0	70	50	4	2	43	1.35
842315--842355	2	20.5	2	100	0	82	48	0	0	51	1.00
849227--849256	14	2.1	14	93	0	51	46	6	3	43	1.46
856900--856928	2	14.5	2	100	0	58	48	0	0	51	1.00
859949--859981	2	16.5	2	100	0	66	51	0	0	48	1.00
862561--862636	8	10.7	7	73	16	59	18	1	3	76	1.01
862564--862653	6	14.3	6	73	20	53	18	2	3	75	1.05
862615--862660	18	2.5	19	76	16	51	23	2	2	71	1.08
863145--863171	2	13.5	2	100	0	54	48	0	0	51	1.00
863392--863418	12	2.2	12	100	0	54	44	18	14	22	1.86
865441--865469	13	2.2	13	100	0	58	20	0	0	79	0.74
865435--865474	21	1.9	21	94	0	71	22	0	0	77	0.77
881476--881504	4	7.2	4	100	0	58	51	24	0	24	1.48
882947--882972	10	2.6	10	100	0	52	46	0	0	53	1.00
887248--887292	14	3.1	14	81	15	56	57	0	0	42	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
887251--887281	7	4.6	7	92	8	55	61	0	0	38	0.96
887354--887385	17	1.9	16	93	6	55	43	0	0	56	0.99
887350--887417	30	2.2	30	82	10	75	45	1	0	52	1.09
888605--888655	16	3.4	15	71	10	50	39	9	1	49	1.47
888637--888688	21	2.5	20	77	20	52	44	1	1	51	1.23
889830--889869	3	13.3	3	89	0	62	32	2	2	62	1.22
897063--897114	15	3.5	15	76	7	61	65	0	1	32	1.04
898863--898900	19	2.0	20	89	5	60	42	7	21	28	1.81
902772--902819	20	2.3	21	82	13	64	58	8	6	27	1.51
907010--907057	21	2.2	23	88	7	73	10	41	0	47	1.37
913183--913269	27	3.1	29	68	19	67	50	1	1	47	1.16
916002--916043	18	2.2	20	87	8	61	50	0	0	50	1.00
917962--918021	7	9.3	7	74	17	58	56	0	0	43	0.99
917981--918018	18	2.1	18	85	9	51	57	0	0	42	0.98
924919--925120	101	2.0	101	92	0	332	25	13	18	42	1.87
927894--927950	10	5.2	10	76	19	60	57	19	10	12	1.63
927916--927965	15	3.7	15	75	25	65	56	16	12	16	1.68
927905--927974	25	2.8	25	97	0	131	57	17	11	14	1.66
930306--930375	36	2.0	36	91	2	115	47	8	4	40	1.54
931927--932017	22	4.2	21	78	8	94	59	2	0	38	1.10
931980--932124	16	9.1	16	68	21	65	46	0	2	49	1.21
934137--934169	2	16.5	2	100	0	66	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
934884--934917	16	2.1	16	100	0	68	61	0	0	38	0.96
934884--934917	5	6.4	5	90	10	50	61	0	0	38	0.96
934884--934926	11	3.7	11	87	12	52	60	0	2	37	1.10
937962--938004	20	2.2	19	84	12	52	16	13	13	55	1.69
941617--941680	28	2.4	27	82	12	71	48	1	0	50	1.10
942810--942875	31	2.1	31	85	0	87	56	4	4	34	1.40
949005--949029	12	2.1	12	100	0	50	48	0	0	52	1.00
949372--949429	24	2.4	24	85	0	71	56	1	3	37	1.26
949966--950018	9	5.4	10	76	10	56	56	0	0	43	0.99
949984--950027	21	2.1	21	82	0	52	56	0	0	43	0.99
954677--954720	12	3.5	12	79	11	52	63	2	0	34	1.07
954924--954968	19	2.2	21	92	7	76	53	0	0	46	1.00
954964--955021	16	3.4	16	77	13	62	62	1	1	34	1.16
964565--964606	18	2.2	20	87	8	61	50	0	0	50	1.00
966585--966643	5	12.2	5	75	13	52	54	0	0	45	0.99
966565--966640	16	4.8	16	71	18	52	53	0	0	46	1.00
966585--966667	41	2.0	40	81	6	96	49	2	0	48	1.14
966911--966952	20	2.2	20	87	8	61	47	0	0	52	1.00
966921--966988	30	2.3	28	77	7	73	60	1	0	38	1.06
974004--974205	101	2.0	101	92	0	332	25	12	18	43	1.85
976785--976812	14	2.0	14	100	0	56	7	35	35	21	1.81
976964--977116	10	14.1	10	66	20	67	52	22	11	13	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
976966--977075	25	4.8	23	71	15	86	52	20	12	13	1.73
976966--977116	66	2.3	66	94	0	257	52	22	11	12	1.71
979451--979515	34	1.9	34	93	0	112	47	9	4	38	1.56
981060--981117	22	2.6	22	86	2	80	56	3	0	39	1.16
981081--981125	18	2.4	18	88	3	63	57	0	0	42	0.98
981235--981299	26	2.6	24	80	17	78	44	4	1	49	1.32
983063--983120	4	15.0	4	92	7	102	25	0	24	50	1.50
984034--984067	16	2.1	16	94	0	59	58	0	0	41	0.98
984038--984067	5	5.8	5	92	7	51	60	0	0	40	0.97
984038--984076	11	3.5	11	89	10	53	58	0	2	38	1.12
987113--987155	20	2.2	19	84	12	52	16	13	13	55	1.69
991485--991548	30	2.1	31	82	8	78	53	0	0	46	1.00
991891--991956	31	2.1	31	85	0	87	56	4	4	34	1.40
996555--996589	2	17.5	2	93	0	61	45	0	2	51	1.16
998481--998539	24	2.5	24	85	0	73	55	1	3	38	1.26
998496--998541	11	3.9	12	81	10	51	60	0	2	36	1.09
998506--998567	27	2.2	29	82	5	74	58	0	1	40	1.08
1003800--1003843	12	3.5	12	79	11	52	63	2	0	34	1.07
1003863--1003889	2	13.5	2	100	0	54	48	0	0	51	1.00
1004057--1004098	19	2.1	20	91	8	68	52	0	0	47	1.00
1010697--1010726	2	15.0	2	100	0	60	50	0	0	50	1.00
1019428--1019467	3	13.3	3	100	0	80	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1020205--1020248	18	2.5	17	85	10	61	52	0	0	47	1.00
1020441--1020483	15	2.9	14	80	10	50	27	0	2	69	1.00
1020598--1020976	143	2.7	141	78	7	376	27	16	8	46	1.76
1021099--1021203	55	1.9	55	82	3	131	28	6	5	59	1.46
1021099--1021303	53	3.7	56	78	5	206	24	5	8	60	1.47
1021102--1021303	108	1.9	110	82	4	257	24	5	8	60	1.47
1023668--1023715	24	2.0	24	88	8	71	33	4	8	54	1.50
1023864--1023897	17	2.0	17	94	0	59	50	0	0	50	1.00
1023878--1024076	11	20.2	10	68	14	69	55	7	2	35	1.39
1023878--1023944	21	3.2	20	83	6	80	52	5	1	40	1.35
1023937--1023998	27	2.3	27	82	0	79	64	6	0	29	1.18
1023915--1023996	28	2.9	27	76	5	74	59	8	0	31	1.27
1024240--1024265	12	2.2	12	100	0	52	76	7	0	15	0.99
1024312--1024340	8	3.8	8	95	4	51	79	0	0	20	0.74
1024362--1024401	19	2.2	19	90	4	64	62	0	0	37	0.95
1024985--1025014	12	2.5	12	94	0	51	36	3	0	60	1.14
1024937--1025042	42	2.6	41	82	8	117	40	0	4	53	1.28
1024989--1025071	10	8.6	10	74	14	59	38	1	3	56	1.24
1025001--1025071	9	7.7	9	75	6	70	38	1	4	56	1.28
1025001--1025071	19	3.8	18	81	5	88	38	1	4	56	1.28
1025056--1025094	17	2.3	17	90	0	60	25	5	2	66	1.25
1025001--1025086	9	9.6	9	71	14	61	34	2	4	58	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1025000--1025088	27	3.2	28	78	9	85	34	2	4	58	1.31
1024971--1025070	10	10.1	10	73	12	55	38	1	5	56	1.28
1025185--1025210	2	13.0	2	100	0	52	50	0	0	50	1.00
1025299--1025356	21	2.8	21	79	12	66	32	3	3	60	1.30
1025299--1025438	11	14.0	10	70	16	69	37	3	1	57	1.25
1025381--1025441	21	2.9	21	80	0	68	45	3	0	50	1.17
1028684--1028739	24	2.3	24	90	0	85	39	5	1	53	1.34
1037829--1037917	45	2.0	45	93	4	153	37	15	19	28	1.92
1037837--1037936	44	2.2	46	87	5	150	38	15	17	30	1.90
1044321--1044362	2	22.0	2	90	9	70	52	0	47	0	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105