genome.fa.s135.2.7.7.80.10.50.1000.53.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  53  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10195639--10195765	40	3.2	41	80	7	138	27	13	18	40	1.88
10195759--10195851	42	2.2	42	78	3	98	29	11	20	38	1.88
10195925--10195996	33	2.3	30	83	11	83	22	12	22	43	1.86
10196247--10196279	15	2.2	15	94	0	57	3	12	0	84	0.72
10197104--10197153	21	2.5	21	80	6	59	30	0	2	68	1.01
10197390--10197416	3	9.0	3	100	0	54	66	0	0	33	0.92
10202938--10203031	22	4.3	22	84	11	113	46	31	0	21	1.51
10202964--10203021	7	7.8	8	82	7	52	46	32	0	20	1.51
10203413--10203449	19	1.9	19	88	0	56	40	2	8	48	1.47
10203541--10203580	20	2.0	20	100	0	80	30	20	15	35	1.93
10205979--10206003	11	2.3	11	100	0	50	36	8	36	20	1.82
10213785--10213870	45	1.9	45	80	4	102	27	18	30	23	1.98
10220809--10220878	12	5.9	12	70	8	54	75	5	2	15	1.11
10221485--10221521	18	2.1	18	100	0	74	24	16	21	37	1.93
10221699--10221795	15	6.4	15	68	17	58	52	1	5	41	1.30
10221687--10221798	6	15.9	7	70	23	60	54	0	4	40	1.27
10222098--10222518	120	3.5	119	82	4	459	42	14	23	19	1.88
10222105--10222574	120	3.9	122	79	5	332	44	15	22	18	1.86
10222098--10222574	241	2.0	242	80	4	534	44	15	22	18	1.87
10228239--10228324	45	1.9	45	90	0	136	22	29	19	29	1.98
10237158--10237434	132	2.1	132	87	1	394	31	19	17	31	1.95
10244253--10244287	9	3.8	9	88	3	52	74	2	0	22	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10244258--10244312	21	2.6	20	83	11	65	74	5	3	16	1.15
10245515--10245558	22	1.9	23	90	9	72	77	0	18	4	0.94
10245991--10246029	21	1.9	20	89	5	60	53	2	0	43	1.14
10245996--10246040	20	2.2	21	84	4	56	57	2	0	40	1.11
10249196--10249380	87	2.1	88	84	3	246	22	10	23	42	1.85
10253655--10253701	15	3.2	15	75	3	51	36	0	2	61	1.08
10253982--10254025	21	2.0	23	86	8	65	61	4	20	13	1.50
10255337--10255378	6	7.0	6	100	0	84	50	0	0	50	1.00
10255337--10255384	18	2.7	18	93	0	69	47	2	2	47	1.25
10257454--10257478	13	1.9	13	100	0	50	32	0	20	48	1.50
10257578--10257616	15	2.7	15	84	4	53	15	12	5	66	1.41
10261640--10261675	16	2.2	16	95	0	63	25	8	13	52	1.68
10261963--10262013	24	2.1	25	88	3	77	3	1	9	84	0.83
10262178--10262454	51	5.4	51	71	6	166	35	11	20	32	1.89
10262269--10262514	51	4.8	51	74	5	176	36	15	18	29	1.92
10262307--10262501	102	1.9	101	81	5	232	35	15	19	29	1.92
10264871--10264927	15	3.9	15	72	2	53	3	19	0	77	0.92
10266127--10266185	23	2.5	24	81	8	77	11	6	20	61	1.53
10269956--10270034	37	2.1	37	83	0	95	32	11	18	36	1.87
10270267--10270306	9	4.3	9	84	6	53	2	0	15	82	0.77
10271180--10271222	9	4.7	9	88	2	59	13	4	2	79	1.00
10271180--10271224	18	2.4	18	88	3	72	15	6	2	75	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10272177--10272267	7	13.6	7	69	20	52	21	1	31	45	1.60
10272194--10272295	34	3.0	35	83	8	104	23	1	30	44	1.65
10272228--10272280	27	1.9	28	88	3	81	22	1	30	45	1.63
10272215--10272284	28	2.4	29	83	9	90	22	2	30	44	1.67
10272194--10272295	27	3.7	27	76	14	75	23	1	30	44	1.65
10272215--10272303	13	6.4	14	70	17	62	23	2	30	43	1.66
10272374--10272424	24	2.1	24	96	0	93	23	0	33	43	1.54
10272379--10272430	24	2.2	24	89	0	77	26	0	26	46	1.53
10273452--10273484	12	2.6	13	80	9	50	24	15	0	60	1.35
10275808--10275842	3	11.7	3	100	0	70	34	0	0	65	0.93
10276277--10276450	26	6.5	26	70	12	93	54	19	5	21	1.64
10276364--10276449	29	3.1	27	80	15	104	60	18	1	19	1.43
10276368--10276460	14	6.8	13	80	13	82	59	19	1	20	1.45
10276528--10276568	19	2.2	19	90	0	64	48	26	7	17	1.73
10279708--10279732	8	3.1	8	100	0	50	24	0	12	64	1.27
10285000--10285042	22	2.0	22	81	9	52	25	20	4	48	1.69
10286427--10286491	27	2.4	28	79	5	71	58	4	3	33	1.34
10286575--10286946	186	2.0	186	85	2	496	33	17	12	36	1.87
10288175--10288319	19	7.6	19	80	6	141	43	40	3	13	1.60
10288173--10288310	57	2.4	57	80	2	161	43	40	3	12	1.60
10288417--10288457	19	2.2	19	95	0	73	46	46	2	4	1.37
10293806--10293849	15	3.1	14	87	6	54	20	0	6	72	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10294358--10294609	118	2.1	117	80	6	278	37	7	7	47	1.61
10294779--10294817	20	1.9	21	89	5	62	25	12	0	61	1.31
10296150--10296231	26	3.2	26	75	3	76	20	26	24	28	1.99
10296294--10296369	3	26.0	3	81	5	93	31	2	3	61	1.28
10296288--10296337	12	4.5	11	77	20	50	36	6	2	56	1.36
10308569--10309031	119	3.9	120	76	4	436	18	20	14	45	1.85
10308569--10309061	238	2.1	237	80	3	537	18	20	15	45	1.85
10309176--10309235	26	2.3	26	80	5	68	18	30	23	28	1.98
10309331--10309359	12	2.5	12	94	5	51	34	6	0	58	1.25
10310260--10310291	7	4.6	7	96	0	55	3	34	0	62	1.11
10310288--10310321	13	2.5	13	85	4	50	11	0	0	88	0.52
10311048--10311091	22	2.0	22	91	4	72	56	0	4	38	1.20
10311124--10311180	18	3.1	19	85	7	82	43	12	14	29	1.81
10311123--10311181	8	6.6	9	74	18	52	42	13	15	28	1.85
10311119--10311305	36	5.2	37	74	7	140	39	15	16	28	1.89
10311123--10311305	88	2.1	90	82	6	221	39	15	16	28	1.89
10311132--10311310	18	10.1	18	76	6	116	39	15	16	29	1.89
10311660--10311795	23	6.1	23	70	14	72	37	16	9	36	1.81
10312273--10312465	72	2.7	71	81	2	201	44	13	11	30	1.80
10313467--10313523	17	3.3	18	80	14	66	7	10	3	78	1.05
10315093--10315147	25	2.2	25	86	0	83	45	1	40	12	1.53
10316156--10316215	3	20.0	3	92	0	84	26	0	6	66	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10316283--10316318	3	12.0	3	87	0	54	63	2	2	30	1.22
10318102--10318132	4	7.8	4	100	0	62	0	0	22	77	0.77
10324029--10324103	36	2.1	36	100	0	150	49	8	10	32	1.66
10325301--10325344	4	10.8	4	85	4	52	15	0	9	75	1.05
10325294--10325332	20	2.0	20	89	0	60	12	2	12	71	1.24
10329899--10329965	8	8.8	8	84	12	88	79	0	11	8	0.95
10329900--10329983	16	5.9	15	78	21	83	80	0	11	7	0.88
10329899--10329987	8	12.6	7	77	17	71	82	0	11	6	0.85
10329899--10329985	19	4.9	17	72	25	74	81	0	11	6	0.86
10330565--10330718	79	1.9	79	82	2	193	35	7	25	30	1.85
10331210--10331424	24	9.5	23	72	14	101	40	4	16	39	1.69
10331201--10331424	45	5.0	45	76	8	215	39	4	16	39	1.70
10331199--10331424	90	2.5	91	79	10	257	39	4	15	39	1.69
10331349--10331441	24	4.0	23	70	16	66	43	3	15	38	1.62
10331415--10331487	38	2.0	35	84	7	92	41	5	15	38	1.70
10331591--10331664	22	3.4	22	72	10	71	37	6	14	40	1.73
10331594--10331665	21	3.4	21	73	17	58	38	6	15	38	1.74
10331553--10331672	43	2.7	45	77	5	118	39	8	16	35	1.79
10331700--10331738	20	1.9	20	89	5	60	41	2	12	43	1.56
10332037--10332102	16	4.2	16	71	21	50	40	9	7	42	1.65
10332260--10332340	18	4.4	18	74	1	72	32	18	9	39	1.84
10332253--10332340	36	2.4	36	86	1	113	30	18	9	42	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10332287--10332373	18	4.9	18	79	8	79	32	18	9	40	1.82
10332330--10332361	16	1.9	17	93	6	57	34	18	12	34	1.89
10333280--10333323	8	5.4	8	81	5	52	15	2	9	72	1.19
10337004--10337040	17	2.2	17	86	13	51	16	27	5	51	1.66
10337826--10337883	16	3.7	16	83	4	73	81	3	5	10	0.97
10337825--10337883	8	7.5	8	82	3	66	81	3	5	10	0.96
10337825--10337883	31	1.9	31	89	0	91	81	3	5	10	0.96
10339103--10339297	24	8.5	24	83	6	237	38	5	16	38	1.72
10339103--10339276	69	2.5	69	87	2	240	40	5	16	38	1.70
10339116--10339297	93	2.0	93	90	2	285	39	5	15	39	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105