genome.fa.s135.2.7.7.80.10.50.1000.79.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  79  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13831241--13831405	23	7.2	23	74	12	108	28	7	19	44	1.78
13831190--13831416	92	2.5	92	87	1	285	29	8	17	44	1.79
13831058--13831313	137	1.9	137	78	4	284	31	8	16	44	1.76
13830906--13831485	321	1.8	321	80	3	718	31	8	15	45	1.75
13830990--13831495	229	2.2	227	80	6	565	31	8	16	44	1.76
13831579--13831638	16	3.5	16	72	16	57	25	15	15	45	1.84
13831611--13831672	16	3.7	16	78	20	56	27	11	14	46	1.78
13831630--13831695	17	3.7	18	82	8	82	28	10	13	46	1.76
13831630--13831699	18	3.9	18	80	9	81	27	10	12	50	1.72
13831979--13832037	21	2.7	22	71	10	59	35	6	13	44	1.71
13834461--13834506	2	24.0	2	91	8	78	50	0	0	50	1.00
13834461--13834506	23	2.0	23	95	0	83	50	0	0	50	1.00
13834633--13834665	12	2.8	12	95	0	57	33	3	0	63	1.10
13835590--13835619	3	10.0	3	100	0	60	33	0	0	66	0.92
13839555--13839604	21	2.4	19	81	15	55	62	0	4	34	1.14
13840212--13840251	18	2.2	20	86	13	59	50	0	0	50	1.00
13844708--13844798	17	5.2	16	75	21	62	72	1	3	23	1.06
13844708--13844800	35	2.7	34	78	20	95	73	1	3	22	1.05
13844718--13844803	20	4.5	19	79	16	81	74	1	2	22	1.00
13845597--13845659	3	21.3	3	84	9	85	63	0	3	33	1.10
13845597--13845723	24	5.5	22	75	13	105	56	2	5	35	1.35
13845643--13845739	21	4.6	21	72	20	85	50	5	7	37	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13845948--13846329	55	6.9	55	70	8	197	39	11	23	25	1.89
13859060--13859102	15	2.9	15	78	0	50	16	4	16	62	1.48
13860726--13860782	15	3.7	15	72	11	53	71	0	7	21	1.08
13861234--13861273	21	1.9	21	85	10	55	60	22	2	15	1.47
13861590--13861648	31	1.9	31	85	0	82	52	5	5	37	1.46
13861623--13861667	18	2.5	18	82	10	56	57	6	0	35	1.25
13861587--13861657	5	13.4	5	74	11	52	54	4	4	36	1.39
13861629--13861702	20	3.8	20	82	7	71	52	9	0	37	1.34
13871352--13871389	15	2.5	16	83	12	53	44	28	5	21	1.73
13875673--13875703	16	1.9	16	93	0	53	22	0	9	67	1.19
13876891--13876934	17	2.6	17	81	0	52	47	2	2	47	1.27
13879037--13879114	41	1.9	41	84	7	106	47	7	6	38	1.58
13879271--13879354	22	3.8	22	70	9	64	51	8	8	32	1.62
13879281--13879387	44	2.4	44	80	6	110	49	7	8	34	1.61
13879337--13879405	22	3.1	22	78	0	66	44	7	10	37	1.66
13879414--13879483	22	3.2	21	74	8	68	52	1	7	38	1.38
13879420--13879533	44	2.6	45	77	10	121	50	2	7	40	1.44
13879743--13879821	22	3.5	22	82	1	95	46	3	12	36	1.60
13879976--13880208	22	10.7	21	73	9	103	45	3	10	39	1.57
13879888--13880164	22	12.7	22	71	9	111	45	5	10	38	1.60
13879969--13880368	44	8.9	44	69	12	165	46	5	9	39	1.58
13880220--13880487	22	12.2	22	69	7	123	45	7	8	37	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13880190--13880252	30	2.1	30	82	11	76	50	1	4	42	1.32
13880243--13880348	11	9.6	11	65	8	54	47	7	7	37	1.60
13880229--13880471	66	3.7	66	72	7	170	46	7	8	37	1.64
13882027--13882108	43	1.9	42	87	7	121	56	8	3	31	1.47
13882024--13882142	21	5.6	21	74	6	105	52	5	5	36	1.50
13884509--13884541	17	1.9	17	93	0	57	63	0	0	36	0.95
13884501--13884552	27	1.9	27	84	0	68	61	0	1	36	1.07
13887031--13887086	24	2.4	23	82	5	69	51	0	3	44	1.18
13892255--13892281	3	9.0	3	100	0	54	33	0	33	33	1.58
13892283--13892324	18	2.3	19	79	4	50	57	0	0	42	0.99
13893947--13893971	11	2.3	11	100	0	50	72	0	0	28	0.86
13894017--13894067	15	3.5	15	78	5	50	47	31	0	21	1.51
13893997--13894074	29	2.7	29	88	4	113	46	28	1	24	1.61
13894077--13894241	29	5.7	29	72	5	127	47	27	3	22	1.66
13906812--13906898	34	2.5	35	81	1	104	20	18	9	51	1.73
13907179--13907253	36	2.1	36	84	0	96	25	17	4	53	1.61
13907027--13907323	107	2.8	107	78	0	315	19	20	10	49	1.78
13907303--13907342	19	2.1	19	95	0	71	12	22	7	57	1.60
13907341--13907489	71	2.1	71	83	0	181	16	22	17	43	1.88
13907368--13907518	71	2.1	71	82	0	176	17	19	15	47	1.83
13907414--13907769	107	3.3	107	80	2	347	20	19	12	47	1.82
13907492--13907563	36	2.0	36	81	5	83	20	13	9	55	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13908086--13908119	3	11.3	3	100	0	68	64	0	0	35	0.94
13909602--13909698	29	3.3	28	74	8	86	47	25	3	23	1.66
13909573--13909756	14	12.6	15	67	15	91	45	30	2	21	1.64
13909616--13909755	58	2.4	57	83	7	165	47	30	1	21	1.60
13909575--13909769	87	2.2	88	79	7	209	46	29	2	21	1.65
13911502--13911555	24	2.2	24	100	0	108	37	27	12	22	1.91
13915568--13915644	40	1.9	40	92	5	129	32	16	9	41	1.80
13915721--13915751	15	2.0	16	93	6	55	38	6	16	38	1.74
13916030--13916121	36	2.5	36	82	5	105	46	9	10	32	1.72
13916132--13916329	49	4.1	47	77	11	195	53	6	13	27	1.63
13916132--13916322	97	2.0	96	81	6	224	52	6	14	27	1.65
13919508--13919532	2	12.5	2	100	0	50	48	0	0	52	1.00
13927263--13927326	32	2.0	32	100	0	128	15	15	6	62	1.51
13932961--13933004	6	6.8	6	80	14	52	63	2	0	34	1.07
13932961--13933002	19	2.1	21	86	8	61	66	2	0	30	1.04
13941700--13941771	37	1.9	37	88	0	108	36	20	16	26	1.94
13942127--13942188	30	2.1	30	100	0	124	22	9	17	50	1.75
13956556--13956600	21	2.2	20	84	11	56	46	6	2	44	1.42
13956889--13956978	30	3.0	31	84	12	109	50	2	1	46	1.21
13958268--13958296	15	1.9	15	100	0	58	65	6	0	27	1.18
13964487--13964543	24	2.5	22	83	11	69	3	17	1	77	1.00
13964586--13964667	5	15.8	5	72	22	55	76	4	2	15	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13964616--13964667	10	4.9	10	78	21	61	76	3	1	17	1.02
13965525--13965550	3	8.7	3	100	0	52	69	0	0	30	0.89
13965730--13966538	118	6.9	118	78	5	701	42	16	22	19	1.89
13965755--13966538	353	2.2	354	81	3	925	41	16	22	19	1.90
13966636--13966695	28	2.1	28	87	0	84	16	20	28	35	1.94
13967992--13968044	3	17.7	3	80	7	63	64	0	1	33	1.05
13968387--13968741	28	12.2	28	73	13	213	47	31	1	20	1.60
13968431--13968740	58	5.4	57	73	13	195	47	31	1	18	1.58
13968432--13968739	87	3.5	86	74	10	261	48	31	1	18	1.58
13968615--13968745	14	9.1	14	73	15	81	49	32	0	17	1.52
13970124--13970171	22	2.2	21	88	3	78	16	0	4	79	0.89
13970371--13970677	152	2.0	152	90	1	481	41	14	14	28	1.86
13983927--13983966	15	2.5	15	88	8	53	50	0	0	50	1.00
13985288--13985780	255	1.9	254	84	1	655	34	21	13	29	1.92
13986645--13986675	16	2.0	15	93	6	53	48	0	32	19	1.49
13990202--13990258	18	3.3	17	76	11	62	59	3	1	35	1.25
13990912--13991389	255	1.9	255	87	1	699	34	22	13	29	1.92
13992252--13992281	16	1.9	15	93	6	51	50	0	30	20	1.49
13995049--13995079	2	16.0	2	93	6	55	0	0	48	51	1.00
14000348--14000402	22	2.5	22	87	0	83	58	0	1	40	1.09
14000536--14000601	21	3.3	21	75	6	57	65	1	6	27	1.25
14000719--14000757	20	2.0	20	85	10	53	30	2	2	64	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14002333--14002798	258	1.8	258	88	1	711	34	22	13	28	1.92
14003676--14003706	16	2.0	15	93	6	53	48	0	32	19	1.49
14011247--14011371	18	6.9	18	73	13	105	27	4	35	32	1.78
14011325--14011365	21	2.0	21	95	0	73	29	2	41	26	1.69
14011716--14011767	27	1.9	27	88	7	79	30	38	5	25	1.79
14015118--14015166	25	1.9	26	91	4	82	40	10	2	46	1.49
14015391--14015428	20	2.0	20	89	5	60	60	5	0	34	1.19
14015659--14015816	37	4.4	37	89	7	231	22	64	0	13	1.28
14015659--14015816	73	2.2	71	87	9	225	22	64	0	13	1.28
14015792--14015831	19	2.0	20	85	4	55	22	62	0	15	1.32

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105