genome.fa.s135.2.7.7.80.10.50.1000.54.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  54  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10339103--10339297	69	2.8	66	80	9	210	38	5	16	38	1.72
10339272--10339378	41	2.6	41	91	2	171	30	7	16	44	1.75
10339322--10339352	14	2.2	14	100	0	62	38	6	12	41	1.69
10339886--10339964	17	4.8	17	72	10	65	41	10	5	43	1.60
10340020--10340151	71	1.9	71	87	3	194	28	13	11	46	1.78
10340172--10340253	19	4.3	19	79	3	76	30	14	9	45	1.77
10340374--10340463	20	4.3	20	71	15	58	31	12	17	38	1.87
10340362--10340445	42	2.0	43	83	6	109	35	13	15	35	1.86
10345639--10345697	28	2.1	28	90	6	93	35	1	28	33	1.68
10345699--10345797	8	12.1	8	80	12	103	81	0	7	11	0.86
10345732--10345800	15	4.6	14	84	12	57	79	0	8	11	0.93
10346945--10347135	21	8.6	21	81	10	195	39	4	15	40	1.68
10346948--10347136	45	4.2	45	83	6	233	39	4	15	40	1.68
10347601--10347693	16	5.8	16	76	17	77	43	13	5	37	1.68
10347609--10347695	31	2.7	32	76	13	90	42	14	4	37	1.67
10347609--10347731	17	7.5	17	73	14	89	41	16	4	37	1.70
10347657--10347731	34	2.2	34	83	4	98	40	18	2	38	1.65
10347883--10347953	36	1.9	37	82	2	90	30	16	12	39	1.86
10347943--10347988	17	2.8	16	83	9	65	32	19	8	39	1.82
10347996--10348033	20	1.9	20	89	10	60	31	2	13	52	1.54
10348085--10348152	20	3.3	20	73	15	59	27	8	19	44	1.80
10348906--10348942	12	2.9	13	88	4	58	13	0	8	78	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10353791--10353824	15	2.3	15	100	0	68	67	23	0	8	1.18
10357735--10357781	23	2.0	23	95	0	85	27	17	29	25	1.97
10357805--10357997	49	3.9	49	93	0	305	24	16	27	31	1.96
10357960--10358067	32	3.2	32	75	14	108	22	16	27	33	1.95
10358030--10358154	49	2.6	49	89	0	187	26	16	26	31	1.96
10358088--10358275	68	2.8	68	94	0	313	22	20	27	29	1.98
10358199--10358235	19	2.0	19	94	5	67	27	24	27	21	1.99
10359749--10359782	17	2.0	17	94	0	59	38	14	5	41	1.70
10360053--10360094	21	2.0	21	90	9	68	38	4	19	38	1.73
10362691--10362716	2	13.0	2	100	0	52	50	0	0	50	1.00
10365341--10365376	12	3.0	12	83	0	54	50	0	0	50	1.00
10367695--10367757	29	2.2	29	85	2	83	20	4	30	44	1.72
10367715--10367770	15	3.7	15	76	7	60	17	3	33	44	1.66
10367702--10367750	14	3.4	14	77	5	53	18	4	30	46	1.67
10367716--10367822	29	3.7	28	81	7	101	18	1	33	45	1.60
10367830--10367875	16	2.8	16	80	3	56	19	2	36	41	1.64
10367836--10367886	16	3.2	16	72	10	50	21	0	41	37	1.54
10368058--10368090	3	11.0	3	100	0	66	33	0	0	66	0.92
10368206--10368238	17	1.9	17	93	0	57	27	6	0	66	1.15
10368353--10368429	31	2.6	29	80	13	77	74	5	0	20	1.01
10370027--10370133	37	2.9	37	77	5	135	48	16	18	15	1.81
10370088--10370865	131	5.9	132	80	6	702	38	17	19	24	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10370535--10370602	22	3.1	21	87	6	91	30	16	20	32	1.94
10370803--10370889	22	4.0	22	77	5	95	33	13	20	32	1.92
10370813--10370916	22	4.7	22	79	5	102	33	14	21	30	1.93
10370685--10371041	176	2.0	176	85	4	479	36	16	19	26	1.93
10370990--10371041	22	2.4	22	83	6	61	28	17	25	28	1.97
10370855--10371283	132	3.3	130	77	5	425	38	15	20	25	1.92
10371216--10371403	94	2.0	94	83	4	236	35	16	20	27	1.94
10371579--10371641	22	2.9	22	82	0	81	25	17	26	30	1.97
10371001--10371606	336	1.8	336	84	2	840	39	16	19	24	1.91
10371883--10371964	41	2.0	41	88	4	121	32	15	18	32	1.92
10372059--10372103	18	2.5	18	88	0	63	37	8	24	28	1.86
10374288--10374330	10	4.3	10	78	0	50	6	9	2	81	0.95
10374292--10374331	20	2.0	20	95	0	71	7	7	5	80	1.03
10380357--10380409	22	2.4	21	84	12	63	16	5	26	50	1.67
10380380--10380442	14	4.4	14	74	4	54	19	6	28	46	1.74
10380380--10380455	29	2.6	29	87	4	100	17	5	31	46	1.70
10380384--10380435	14	3.6	14	76	5	59	19	5	28	46	1.73
10380389--10380543	29	5.3	28	76	12	109	16	2	34	47	1.60
10380471--10380536	30	2.2	29	83	2	78	16	1	36	45	1.57
10380515--10380559	16	2.8	16	79	3	54	20	2	35	42	1.64
10380579--10380622	14	3.2	13	84	12	52	11	2	29	56	1.46
10380752--10380792	3	14.3	3	82	10	50	34	2	0	63	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10381106--10381157	26	2.0	25	85	3	68	71	0	1	26	0.97
10384086--10384144	4	14.5	4	79	10	57	20	3	5	71	1.20
10384191--10384307	57	2.1	56	85	4	155	46	7	9	36	1.65
10388052--10388078	1	27.0	1	100	0	54	100	0	0	0	0.00
10390386--10391222	161	5.2	161	81	4	866	38	14	12	34	1.84
10390429--10391222	322	2.5	318	83	4	970	38	14	12	34	1.84
10392633--10392783	6	26.0	5	72	21	70	20	5	2	71	1.18
10392643--10392783	24	5.7	24	73	20	94	21	5	1	70	1.15
10392633--10392783	13	12.5	11	75	20	115	20	5	2	71	1.18
10392694--10392782	19	4.3	20	70	18	67	22	5	1	70	1.14
10392678--10392811	63	2.1	63	83	5	164	26	5	2	65	1.27
10396642--10396679	18	2.1	18	90	0	58	84	0	15	0	0.63
10396655--10396697	21	2.0	22	86	8	63	79	0	20	0	0.74
10396635--10396708	30	2.5	30	80	10	91	77	0	20	2	0.90
10396970--10397042	24	3.0	24	84	9	87	83	6	6	2	0.89
10396970--10397041	25	2.9	25	84	12	87	84	6	5	2	0.85
10398038--10398256	87	2.5	86	85	2	278	31	16	14	36	1.89
10398142--10398379	121	2.0	119	83	5	300	33	17	12	36	1.87
10400052--10400121	23	3.0	23	72	12	63	17	5	4	72	1.20
10400099--10400123	13	1.9	13	100	0	50	24	0	4	72	1.02
10404462--10404507	15	3.2	15	75	9	51	56	0	0	43	0.99
10405591--10405646	28	2.0	28	89	6	87	39	12	8	39	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10408461--10408603	76	1.9	75	88	4	218	52	9	7	30	1.62
10408462--10408620	76	2.1	74	83	5	196	51	9	9	29	1.66
10408741--10408800	23	2.6	23	76	7	59	51	6	6	35	1.54
10408659--10408892	74	3.2	73	80	3	256	50	5	11	32	1.61
10408666--10408893	72	3.1	74	78	3	262	50	5	11	32	1.61
10409807--10409861	26	2.1	26	93	0	92	40	21	20	18	1.92
10410024--10410073	19	2.7	18	78	9	55	10	10	4	76	1.15
10410011--10410104	46	2.0	47	95	4	174	10	11	4	73	1.23
10412529--10413122	160	3.7	161	78	6	591	40	17	10	31	1.83
10413634--10413667	17	2.0	17	88	0	50	47	5	0	47	1.26
10414092--10414688	131	4.6	129	76	13	462	37	8	8	45	1.65
10415042--10415093	23	2.3	23	86	6	79	55	0	5	38	1.24
10415085--10415118	17	2.0	17	94	0	59	47	2	0	50	1.16
10415269--10415309	15	2.5	17	88	11	59	36	0	2	60	1.10
10415269--10415303	18	2.0	18	94	5	63	40	0	2	57	1.14
10415750--10415794	23	2.0	23	87	8	67	53	6	0	40	1.27
10415780--10415816	16	2.4	15	86	4	56	45	0	2	51	1.15
10417397--10417583	103	1.8	104	86	4	272	43	7	16	32	1.75
10417397--10417591	102	1.9	104	85	4	270	44	7	15	32	1.75
10417373--10417611	102	2.3	104	77	3	268	45	8	13	31	1.74
10425159--10425201	8	5.4	8	89	8	52	16	2	4	76	1.05
10425158--10425252	7	12.4	7	73	16	57	21	2	4	72	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10425164--10425296	17	7.8	16	73	22	78	24	2	2	71	1.09
10425167--10425255	46	1.9	46	82	13	112	21	3	3	71	1.15
10425189--10425447	4	64.2	4	69	17	71	27	3	1	66	1.18
10425172--10425442	66	4.1	66	73	16	188	27	3	1	66	1.18
10425223--10425413	52	3.9	50	76	18	163	30	3	2	63	1.23
10425218--10425393	52	3.4	52	76	16	172	29	3	2	64	1.22
10425421--10425455	12	2.9	12	86	0	52	14	2	0	82	0.77
10426324--10426376	3	18.0	3	88	3	72	30	0	1	67	1.01
10426327--10426371	23	2.0	23	90	0	72	31	0	2	66	1.04
10426324--10426374	26	2.0	26	92	0	84	31	0	1	66	1.03

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105