genome.fa.s135.2.7.7.80.10.50.1000.72.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  72  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12806184--12806227	14	3.1	14	83	6	61	77	0	22	0	0.77
12809162--12809342	38	4.8	38	74	9	138	36	18	10	34	1.85
12809093--12809706	309	2.0	309	84	1	811	34	17	11	36	1.86
12810531--12810580	25	1.9	27	88	8	77	32	0	8	60	1.26
12810749--12810799	18	2.7	18	84	9	57	72	0	9	17	1.11
12810746--12810802	19	2.9	20	79	7	64	70	0	8	21	1.14
12810771--12810837	24	2.8	24	77	8	75	76	1	5	16	1.06
12810796--12810842	19	2.5	18	83	10	58	80	2	4	12	0.94
12811067--12811141	30	2.5	31	82	4	89	49	20	4	26	1.66
12811618--12811648	3	10.3	3	92	0	53	64	0	3	32	1.09
12811971--12812436	119	3.9	117	79	3	468	45	14	21	19	1.85
12812827--12812876	22	2.3	22	86	3	75	32	2	28	38	1.68
12813507--12813714	54	4.0	53	80	9	205	18	17	11	52	1.74
12817338--12817376	18	2.2	18	90	0	60	30	0	12	56	1.37
12817455--12817489	13	2.7	13	86	0	52	71	0	11	17	1.14
12817482--12817539	22	2.5	22	78	13	64	79	3	8	8	1.04
12817781--12817852	31	2.3	31	87	0	99	52	19	2	25	1.59
12818332--12818359	3	9.3	3	100	0	56	67	0	0	32	0.91
12821493--12821647	67	2.3	67	82	4	186	40	16	12	30	1.86
12821612--12821741	66	2.0	66	87	0	188	33	22	20	23	1.97
12821558--12821755	33	6.0	33	73	7	123	34	21	18	24	1.96
12821618--12821755	66	2.1	66	81	0	159	32	24	21	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12821826--12821890	31	2.1	31	88	0	94	30	4	10	53	1.56
12821857--12822112	46	5.6	46	81	5	259	31	9	13	45	1.75
12821784--12821937	77	2.0	77	86	5	213	32	10	12	44	1.76
12821951--12822020	22	3.1	22	66	22	54	31	5	12	50	1.64
12821857--12822151	92	3.2	89	80	7	272	33	9	12	44	1.74
12821856--12822115	138	1.9	138	84	6	348	31	9	13	45	1.75
12821856--12822152	138	2.2	138	81	6	334	33	9	12	44	1.74
12822192--12822228	11	3.3	11	92	7	65	83	16	0	0	0.64
12822192--12822228	6	6.5	6	90	9	60	83	16	0	0	0.64
12822192--12822228	17	2.2	17	90	9	58	83	16	0	0	0.64
12822192--12822264	23	3.1	23	82	9	69	78	9	2	9	1.07
12822213--12822266	24	2.2	24	86	0	72	77	5	3	12	1.07
12822269--12822297	15	1.9	15	100	0	58	75	10	0	13	1.04
12822293--12822370	21	3.8	20	74	15	61	65	3	1	29	1.18
12822284--12822369	9	8.4	10	71	17	52	66	4	1	27	1.19
12826858--12826993	56	2.4	56	82	6	150	61	8	8	22	1.52
12826937--12827008	34	2.2	33	83	14	94	62	4	8	25	1.41
12827649--12827700	13	4.2	12	81	13	61	55	1	13	28	1.49
12827649--12827696	24	2.0	24	87	0	69	54	2	12	31	1.49
12830880--12830943	28	2.1	32	83	11	82	29	1	7	60	1.34
12832427--12832459	17	2.0	17	88	5	50	51	3	0	45	1.16
12832991--12833060	30	2.3	31	80	7	81	42	0	1	55	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12837884--12837910	2	13.5	2	100	0	54	48	0	0	51	1.00
12839622--12839668	24	2.0	24	82	0	58	80	0	17	2	0.80
12842864--12842918	25	2.2	24	78	15	58	14	3	7	74	1.17
12842903--12842948	20	2.4	19	78	14	58	6	15	4	73	1.19
12843148--12843187	17	2.2	19	91	8	66	85	2	0	12	0.71
12843148--12843187	18	2.2	19	90	4	64	85	2	0	12	0.71
12847280--12847311	16	2.0	16	93	0	55	46	0	3	50	1.17
12847332--12847376	18	2.4	18	85	10	56	55	0	0	44	0.99
12847338--12847507	44	3.7	45	73	15	127	47	2	0	50	1.16
12853117--12853180	24	2.7	24	80	0	65	31	21	23	23	1.99
12856720--12856889	7	26.0	7	73	13	139	17	0	37	45	1.53
12856720--12856888	53	3.3	51	79	12	168	17	0	37	44	1.53
12856720--12856872	13	11.7	13	70	13	84	17	0	37	44	1.54
12856747--12856889	33	4.4	32	73	18	116	16	0	37	44	1.53
12856722--12856889	26	6.4	27	75	12	138	16	0	36	45	1.52
12857198--12857243	20	2.3	20	85	7	58	41	4	8	45	1.55
12857238--12857312	34	2.2	34	81	9	91	36	4	10	49	1.56
12859425--12859465	20	2.1	20	86	13	59	0	2	12	85	0.70
12859502--12859991	41	12.0	41	76	3	299	38	12	19	29	1.88
12860116--12860166	18	2.8	18	81	0	66	45	5	11	37	1.65
12860244--12860472	71	3.2	71	82	6	243	43	13	16	26	1.85
12863267--12863318	13	3.8	13	77	7	50	17	0	38	44	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12863257--12863306	21	2.4	21	83	6	57	18	0	34	48	1.48
12863291--12863367	20	3.8	20	77	5	84	20	1	33	44	1.60
12863323--12863367	13	3.4	13	90	6	72	17	0	35	46	1.49
12865773--12865846	5	14.8	5	78	5	69	12	0	8	79	0.92
12865773--12865846	15	4.9	15	81	5	87	12	0	8	79	0.92
12865769--12865852	15	5.3	15	72	20	57	11	0	9	78	0.96
12866149--12866334	40	4.6	39	69	9	115	37	14	15	33	1.87
12866145--12866334	81	2.3	81	86	1	265	38	14	14	32	1.86
12868375--12868422	24	2.0	24	83	0	60	6	22	2	68	1.23
12868402--12868445	23	1.9	23	85	0	61	9	15	2	72	1.19
12872777--12872859	37	2.3	35	81	4	85	34	12	21	31	1.90
12872755--12872865	35	3.1	35	77	6	107	32	11	22	33	1.90
12873886--12874065	25	7.2	25	84	0	198	46	9	12	31	1.74
12873886--12874065	75	2.4	75	84	1	236	46	9	12	31	1.74
12875138--12875211	29	2.6	28	82	6	87	20	1	29	48	1.58
12875138--12875251	13	8.3	13	70	20	63	20	1	31	46	1.61
12875203--12875316	26	4.3	26	74	13	99	19	1	35	42	1.61
12875216--12875318	13	7.8	13	77	6	100	17	1	36	43	1.60
12882888--12883058	76	2.3	77	84	9	219	32	8	6	52	1.58
12882972--12883100	61	2.1	61	82	5	154	37	9	4	48	1.56
12882987--12883125	61	2.3	61	84	8	171	37	7	6	48	1.58
12883130--12883172	12	3.5	11	82	17	50	81	0	2	16	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12883140--12883198	3	19.7	3	73	13	50	72	0	5	22	1.03
12883981--12884129	3	44.7	3	81	15	88	69	0	2	28	0.99
12883978--12884130	24	6.0	27	76	18	116	70	0	1	27	0.98
12884011--12884124	4	29.5	4	78	10	121	70	0	2	27	1.01
12884318--12884661	130	2.7	130	80	5	349	44	18	11	25	1.84
12884318--12884680	44	8.5	42	83	3	300	43	19	12	25	1.85
12884319--12884680	86	4.2	85	79	7	302	43	19	12	25	1.86
12884516--12884752	42	5.6	42	77	10	198	45	15	12	26	1.82
12884486--12884752	42	6.4	41	81	4	132	45	16	12	25	1.82
12884466--12884752	84	3.4	84	83	6	269	44	16	12	25	1.83
12885764--12885810	20	2.3	20	89	7	69	4	8	0	87	0.67
12885775--12885809	16	2.3	15	90	5	52	2	5	0	91	0.50
12896443--12896613	76	2.3	76	84	6	222	31	8	8	51	1.62
12896531--12896681	62	2.5	60	89	6	223	37	7	5	49	1.55
12897541--12897675	4	35.5	4	72	14	67	68	0	2	28	1.04
12897542--12897704	3	51.7	3	73	22	106	68	0	2	29	1.03
12897542--12897707	73	2.3	71	81	13	189	68	0	2	28	1.02
12897546--12897705	40	3.9	39	72	25	134	68	0	2	29	1.03
12897832--12897867	18	2.0	18	100	0	72	27	11	27	33	1.91
12901074--12901376	151	2.0	151	94	0	527	21	11	26	40	1.87
12901615--12901662	22	2.1	24	88	7	73	29	0	0	70	0.87
12901615--12901652	11	3.5	11	86	13	60	28	0	0	71	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12902484--12902561	39	2.0	39	92	0	129	57	0	20	21	1.41
12906028--12906255	125	1.8	125	80	7	275	38	11	13	36	1.82
12906204--12906325	62	1.9	64	83	3	158	45	13	10	31	1.77
12907745--12907825	37	2.2	37	86	0	108	29	4	11	54	1.56
12907962--12908061	19	5.7	19	69	27	87	33	1	9	57	1.37
12907961--12908062	37	3.1	31	77	20	109	32	0	8	57	1.36
12907987--12908063	37	2.1	37	95	0	136	29	1	9	59	1.36
12907631--12908153	242	2.2	241	89	1	787	34	6	13	46	1.68
12907993--12908062	19	3.8	18	81	12	88	31	1	7	60	1.33
12908080--12908106	13	2.1	13	100	0	54	66	0	0	33	0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105