genome.fa.s135.2.7.7.80.10.50.1000.69.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  69  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12297542--12297697	58	2.7	58	87	0	231	48	5	10	35	1.62
12301197--12301235	18	2.2	18	86	9	53	79	5	15	0	0.90
12301646--12301699	9	5.8	9	79	16	56	79	0	12	7	0.92
12301652--12301705	21	2.7	21	83	16	78	77	0	12	9	0.98
12302323--12302449	63	2.0	63	83	5	161	34	9	23	32	1.87
12302787--12302828	14	3.2	14	80	19	63	42	7	9	40	1.65
12302854--12302935	21	3.9	21	85	4	112	41	7	14	36	1.74
12302914--12303008	35	2.6	36	86	5	129	38	10	17	32	1.84
12302949--12303085	59	2.3	59	83	3	179	38	8	17	35	1.81
12303053--12303105	20	2.6	21	84	3	63	41	11	11	35	1.77
12303053--12303108	21	2.8	20	86	2	67	41	10	12	35	1.78
12303686--12303779	42	2.2	43	84	3	127	25	10	15	47	1.78
12303707--12303864	42	3.8	41	77	7	147	24	11	20	43	1.84
12304002--12304034	9	3.8	9	88	8	50	84	0	6	9	0.76
12304001--12304033	17	1.9	17	93	0	57	84	0	3	12	0.72
12304682--12304734	20	2.5	22	84	9	65	11	0	11	77	1.00
12304679--12304738	23	2.6	24	84	7	72	13	0	10	76	1.01
12304857--12304900	19	2.3	19	84	0	52	59	6	0	34	1.24
12304819--12304959	62	2.4	58	80	10	167	54	7	4	34	1.47
12304877--12305176	77	3.9	77	88	3	412	53	5	5	35	1.47
12304933--12304964	16	2.0	16	93	0	55	59	6	0	34	1.23
12305010--12305053	16	2.8	16	83	16	56	56	4	2	36	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12305093--12305130	17	2.3	17	95	4	69	68	5	0	26	1.11
12305103--12305339	58	4.0	58	82	6	282	47	6	11	35	1.65
12305125--12305344	117	1.9	118	89	4	347	45	6	12	34	1.69
12305423--12305459	5	7.8	5	88	11	60	16	0	0	83	0.64
12307912--12308269	127	2.8	127	77	14	303	38	11	12	37	1.79
12318694--12318777	39	2.2	39	97	0	159	36	40	2	20	1.65
12326689--12326732	22	2.0	22	86	8	63	31	11	13	43	1.80
12330753--12330796	22	2.0	22	95	0	79	31	11	13	43	1.80
12330939--12330987	26	2.0	25	88	8	73	20	20	8	51	1.73
12333966--12334016	5	10.6	5	83	8	61	50	0	0	49	1.00
12333970--12334037	28	2.5	27	88	4	93	50	0	0	50	1.00
12333975--12334024	23	2.2	23	89	7	75	46	0	0	54	1.00
12334120--12334191	12	5.8	12	73	15	56	58	1	1	38	1.15
12334196--12334225	16	1.9	16	93	6	53	26	0	0	73	0.84
12335654--12335691	20	1.9	20	89	10	60	31	0	0	68	0.90
12337157--12337189	11	3.0	11	90	0	57	87	0	12	0	0.53
12337815--12337865	24	2.2	23	86	10	68	50	0	25	23	1.49
12338001--12338044	16	2.9	15	90	6	63	59	0	22	18	1.38
12338360--12338396	19	1.9	19	88	0	56	40	5	29	24	1.77
12338452--12338723	48	5.7	48	71	14	179	30	12	13	43	1.81
12339395--12339803	144	2.9	142	76	8	350	32	11	12	44	1.78
12341382--12341441	18	3.3	18	88	2	84	46	30	5	18	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12341425--12341524	7	14.9	7	67	19	61	48	34	1	17	1.54
12341489--12341522	13	2.5	14	90	4	52	47	32	0	20	1.51
12341429--12341562	60	2.2	58	82	10	146	47	31	0	20	1.55
12341546--12341580	18	1.9	18	94	0	61	45	25	0	28	1.54
12341605--12341647	22	2.0	22	90	0	68	44	32	4	18	1.71
12349553--12349588	15	2.5	15	90	4	56	41	25	5	27	1.77
12351399--12351661	73	3.6	72	72	4	222	28	17	19	34	1.95
12351390--12351704	146	2.1	146	85	1	432	29	17	20	33	1.95
12351482--12351704	73	3.1	72	76	2	212	28	18	18	34	1.95
12358396--12358440	23	2.0	23	86	0	63	40	13	20	26	1.89
12360171--12360209	19	2.1	19	90	0	60	35	7	23	33	1.83
12363845--12363904	27	2.2	26	80	11	66	60	1	10	28	1.39
12365127--12365186	25	2.5	24	84	7	70	36	0	1	61	1.06
12365104--12365166	31	2.1	31	82	14	78	33	1	1	63	1.13
12365167--12365222	27	2.1	26	81	15	62	50	1	0	48	1.11
12372781--12372946	85	2.0	84	85	3	226	18	25	33	22	1.96
12379513--12379671	84	1.9	84	82	10	200	20	24	30	24	1.98
12391233--12391302	33	2.1	33	91	0	113	30	38	7	24	1.82
12395213--12395252	2	20.0	2	100	0	80	0	50	0	50	1.00
12396309--12396333	5	5.0	5	100	0	50	40	20	40	0	1.52
12396344--12396375	2	16.0	2	93	0	55	53	0	46	0	1.00
12399040--12399228	101	1.9	101	85	2	263	38	11	7	42	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12400815--12400887	17	4.3	17	75	3	67	36	10	13	38	1.80
12400856--12400894	17	2.3	17	81	0	51	35	15	10	38	1.81
12400924--12400985	17	3.6	17	77	0	70	37	12	12	37	1.82
12401032--12401078	17	2.7	18	87	6	62	36	10	14	38	1.81
12401216--12401321	44	2.4	44	82	6	126	47	13	7	32	1.70
12401241--12401314	23	3.3	22	69	16	62	50	12	4	33	1.59
12401260--12401414	81	1.9	81	82	2	195	45	11	7	34	1.69
12401398--12401459	22	2.7	23	77	2	63	45	16	1	37	1.57
12401574--12401690	44	2.7	44	86	2	164	43	15	7	33	1.75
12401544--12401690	22	6.6	23	74	9	117	43	14	6	34	1.73
12403231--12403281	14	3.8	14	74	10	61	7	7	1	82	0.92
12404478--12404725	133	1.9	132	86	4	356	52	14	7	25	1.67
12404939--12404977	19	2.1	19	90	0	60	64	12	2	20	1.40
12405606--12405653	24	2.0	24	95	0	87	31	25	6	37	1.81
12406051--12406248	104	1.9	101	85	5	272	40	7	7	44	1.60
12406067--12406291	104	2.2	104	80	5	253	40	8	6	44	1.60
12409195--12409254	25	2.5	23	77	17	59	70	8	6	15	1.33
12409202--12409252	25	2.0	25	85	7	68	74	5	5	13	1.19
12415352--12415431	39	2.1	39	90	4	126	36	41	1	21	1.61
12427692--12427735	22	2.0	22	100	0	88	45	13	9	31	1.75
12433664--12433705	22	1.9	22	90	0	66	33	11	9	45	1.73
12433892--12433956	25	2.5	26	90	2	96	16	29	16	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12437599--12437640	22	1.9	22	90	0	66	33	11	9	45	1.73
12441439--12441497	30	2.0	30	86	6	84	5	33	8	52	1.54
12443091--12443150	15	3.9	15	77	18	61	25	0	0	75	0.81
12443091--12443149	26	2.2	26	85	8	75	23	0	0	76	0.79
12447691--12448183	243	2.0	248	86	4	701	34	18	13	33	1.90
12449767--12449878	56	2.0	56	100	0	224	26	28	10	33	1.90
12459248--12459337	20	4.5	21	74	12	82	52	13	1	33	1.48
12459282--12459367	19	4.3	19	74	15	66	54	12	2	30	1.50
12459647--12459680	15	2.2	15	89	5	50	73	0	8	17	1.08
12462316--12462516	112	1.8	112	81	3	253	49	7	7	34	1.60
12463036--12463085	19	2.8	18	77	17	52	40	6	2	52	1.38
12466002--12466049	16	3.1	15	88	8	69	43	8	2	45	1.45
12468882--12468937	12	4.5	13	74	21	57	30	21	0	48	1.51
12469605--12469647	16	2.7	16	77	0	50	27	0	9	62	1.25
12472142--12472166	12	2.1	12	100	0	50	52	0	24	24	1.48
12472710--12472814	21	5.0	22	76	5	74	47	15	4	32	1.66
12472747--12472854	21	5.2	21	76	13	89	47	11	6	35	1.65
12472747--12472854	42	2.6	41	82	7	128	47	11	6	35	1.65
12473235--12473358	42	3.0	42	76	13	121	48	12	6	33	1.66
12473231--12473361	21	6.2	21	76	7	86	47	12	6	33	1.67
12473760--12473874	21	5.4	21	79	5	124	50	13	1	34	1.51
12473304--12476024	516	5.3	509	78	10	2495	47	8	7	37	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12474276--12474415	21	6.6	21	71	8	63	49	10	6	33	1.63
12474281--12474359	21	3.7	21	79	1	68	51	10	6	31	1.60
12474309--12474385	21	3.8	20	77	8	66	50	12	1	35	1.49
12474841--12474935	42	2.3	42	87	3	129	43	10	7	38	1.67
12474868--12474935	21	3.2	21	77	8	75	45	10	7	36	1.66
12475334--12475441	21	5.1	21	75	4	92	48	11	8	32	1.69
12475343--12475446	42	2.5	42	80	3	129	47	10	7	34	1.67
12475343--12475453	21	5.3	21	70	12	75	47	9	7	35	1.64
12475436--12475468	16	2.1	16	88	11	50	60	6	3	30	1.36
12475816--12475857	22	1.9	22	90	0	66	52	4	7	35	1.50

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105