genome.fa.s135.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  5  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
559916--559961	20	2.3	20	85	3	67	26	0	4	69	1.07
561848--562118	130	2.1	130	90	6	431	34	12	18	35	1.88
564673--564779	54	2.0	54	80	10	121	57	1	0	41	1.10
568820--568857	18	2.1	18	85	9	51	60	0	2	36	1.11
569090--569143	13	4.1	14	73	20	53	48	0	1	50	1.11
569074--569171	38	2.6	38	80	9	119	51	1	2	45	1.19
569517--569551	17	2.0	17	88	5	52	85	11	2	0	0.69
575144--575189	19	2.5	20	86	10	62	63	0	0	36	0.95
575337--575382	20	2.1	21	84	11	58	60	0	0	39	0.97
575330--575382	21	2.5	22	77	17	60	56	0	0	43	0.99
578247--578308	26	2.5	24	80	15	72	51	3	1	43	1.27
579133--579167	2	17.5	2	100	0	70	51	0	0	48	1.00
580466--580506	2	20.5	2	94	0	73	51	0	48	0	1.00
580940--580978	20	1.9	21	89	5	62	28	2	0	69	1.02
581418--581454	17	2.1	18	90	10	58	51	0	0	48	1.00
581758--581806	18	2.8	17	78	6	55	44	0	6	48	1.27
581927--581985	27	2.2	27	87	6	84	50	1	1	45	1.21
582361--582400	12	3.5	11	83	10	53	47	2	0	50	1.14
606290--606344	22	2.5	22	88	2	76	40	3	0	56	1.17
606872--606922	2	24.5	2	84	7	66	3	45	3	47	1.40
612648--612704	21	2.7	21	86	5	71	40	5	0	54	1.23
613225--613270	23	2.0	23	87	8	67	8	39	6	45	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
617492--617559	27	2.4	28	85	7	84	30	23	22	23	1.99
617546--617593	21	2.1	23	88	11	73	20	25	35	18	1.95
617587--617616	3	10.0	3	92	0	51	30	33	36	0	1.58
617512--617641	24	5.4	24	69	8	95	26	26	32	13	1.94
617597--617673	30	2.6	30	93	0	127	28	27	29	14	1.95
622371--622397	14	1.9	14	100	0	54	7	7	48	37	1.59
630569--630631	26	2.4	25	76	21	67	63	0	0	36	0.95
630588--630626	20	2.0	20	100	0	78	66	0	0	33	0.92
630587--630629	13	3.3	13	81	18	54	67	0	0	32	0.91
631718--631756	13	3.1	12	85	10	51	30	0	2	66	1.05
631724--631762	20	2.0	20	89	0	60	33	0	2	64	1.08
633589--633655	13	4.8	14	73	21	52	37	2	0	59	1.13
637416--637494	39	2.0	39	95	0	140	21	39	13	25	1.90
637436--637698	140	1.9	140	96	0	490	18	30	19	31	1.96
637439--637820	140	2.7	138	86	6	453	19	30	18	31	1.96
646995--647049	22	2.4	23	85	11	78	58	0	0	41	0.98
656713--656754	17	2.4	18	77	22	54	52	0	0	47	1.00
658871--658895	12	2.1	12	100	0	50	36	0	0	64	0.94
658952--659004	25	2.2	25	82	3	63	49	1	1	47	1.23
659246--659299	17	3.2	18	73	19	53	37	0	0	62	0.95
660065--660128	33	2.0	32	81	3	74	50	4	1	43	1.32
666160--666193	17	2.0	17	94	0	59	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
666686--666716	2	16.0	2	93	6	55	51	0	0	48	1.00
671533--671596	20	3.2	20	87	10	96	51	0	1	46	1.10
671594--671670	37	2.0	41	85	10	108	68	2	0	28	1.02
671587--671674	37	2.4	37	78	3	97	65	2	1	30	1.12
671968--672042	33	2.3	33	95	0	132	46	14	0	38	1.45
676805--676840	16	2.2	17	90	5	56	77	0	0	22	0.76
681508--682205	341	2.0	341	95	0	1263	44	15	12	26	1.83
683166--683196	14	2.1	15	94	5	55	51	9	6	32	1.60
685373--685413	17	2.4	18	80	12	50	36	4	2	56	1.34
687646--687703	29	2.0	29	89	0	89	25	0	22	51	1.48
687656--687744	14	6.4	13	72	18	63	21	0	24	53	1.45
687700--687760	28	2.1	29	88	8	90	21	0	27	50	1.49
687697--687750	14	4.0	13	78	7	54	20	0	27	51	1.47
688205--688238	3	11.3	3	100	0	68	32	0	0	67	0.91
688310--688345	10	3.7	10	92	3	56	75	0	2	22	0.94
688297--688351	9	6.2	9	74	17	53	74	1	3	20	1.06
689809--689925	33	3.4	33	76	10	101	51	9	19	19	1.74
689865--690103	103	2.3	102	77	4	237	48	10	19	21	1.77
689878--690336	34	13.4	34	70	10	190	49	10	19	20	1.77
690068--690405	68	4.9	67	78	6	268	47	10	21	21	1.79
690074--690405	135	2.4	138	81	5	341	47	10	20	20	1.79
690174--690405	34	6.7	33	74	8	169	47	10	21	21	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
695255--695322	33	2.1	33	97	0	127	30	13	5	50	1.65
695269--695337	33	2.1	32	84	10	86	31	10	10	47	1.70
697248--697303	28	2.0	27	83	10	69	41	3	1	53	1.29
699061--699104	23	1.9	23	85	0	61	54	9	0	36	1.32
699111--699146	18	2.0	18	89	10	56	50	5	0	44	1.25
706096--706196	49	2.1	49	86	0	139	46	15	7	29	1.74
708392--708455	13	4.8	13	83	9	67	79	3	3	14	0.97
708406--708469	21	3.2	19	84	6	74	81	1	3	14	0.89
708392--708469	14	5.8	12	80	11	57	79	2	5	12	1.00
708406--708463	19	2.9	19	87	5	71	81	1	1	15	0.86
709160--709189	6	5.0	6	91	0	51	16	13	16	53	1.73
709573--710131	115	4.8	116	74	6	369	46	15	19	18	1.84
722437--722487	16	3.1	16	78	13	50	80	0	9	9	0.91
723791--723837	24	2.0	24	83	8	60	63	2	12	21	1.39
724015--724043	14	2.0	15	93	6	51	62	6	0	31	1.22
724462--724497	18	2.0	18	88	0	54	27	5	2	63	1.30
725138--725340	101	2.0	101	84	0	262	34	10	11	42	1.77
730917--730946	9	3.2	9	95	4	51	63	0	0	36	0.95
730919--730948	10	3.1	10	95	4	53	63	0	0	36	0.95
730985--731042	29	2.0	29	100	0	116	44	6	6	41	1.58
731488--731539	22	2.3	23	78	15	63	38	11	3	46	1.59
736429--736484	23	2.4	23	90	0	94	33	10	14	41	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
739726--739776	25	2.0	25	96	0	93	23	27	15	33	1.95
744883--745222	112	3.1	113	90	2	546	42	8	4	45	1.53
754292--754337	23	2.0	24	83	12	60	54	4	0	41	1.20
756631--756686	26	2.2	26	93	3	96	57	0	5	37	1.22
760185--760227	19	2.3	19	84	8	52	37	2	0	60	1.10
766237--766294	22	2.6	22	84	15	75	41	0	3	55	1.17
766379--766427	18	2.7	18	75	15	55	48	2	2	46	1.25
768763--768805	22	2.0	22	86	9	61	60	23	4	11	1.50
773513--773653	71	2.0	71	85	2	194	19	13	23	43	1.87
776297--776343	23	2.0	23	83	4	58	21	8	10	59	1.57
780597--780631	12	3.1	12	88	12	56	48	0	0	51	1.00
780590--780631	22	2.0	20	90	9	66	47	0	0	52	1.00
780591--780634	10	4.4	10	84	15	56	43	0	0	56	0.99
780660--780699	17	2.2	19	83	16	50	65	0	0	35	0.93
780708--780741	8	4.2	8	100	0	68	23	0	0	76	0.79
781196--781235	16	2.5	16	87	0	53	45	0	2	52	1.14
783056--783109	21	2.5	22	80	11	58	61	1	0	37	1.07
783815--783857	14	2.9	15	75	6	52	48	4	0	46	1.22
790499--790529	15	2.1	15	93	0	53	51	3	22	22	1.62
796893--796943	21	2.4	21	83	0	66	33	3	3	58	1.35
798124--798162	21	1.9	21	84	5	53	33	5	5	56	1.43
799383--799410	2	14.0	2	100	0	56	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
815126--815164	7	5.3	7	88	11	60	28	0	0	71	0.86
815125--815163	16	2.4	16	95	0	69	28	0	0	71	0.86
815171--815222	28	1.9	26	88	7	77	55	9	0	34	1.32
815174--815226	13	3.9	13	72	18	54	54	11	0	33	1.36
815336--815373	19	2.0	19	85	10	51	31	2	0	65	1.06
815399--815431	3	11.0	3	100	0	66	66	0	0	33	0.92
818159--818196	10	3.9	10	82	6	51	34	0	0	65	0.93
818495--818559	24	2.8	24	71	2	60	67	3	0	29	1.05
818575--818633	25	2.4	25	82	5	66	47	1	1	49	1.21
818604--818660	30	1.9	30	89	7	89	52	0	1	45	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105