genome.fa.s135.2.7.7.80.10.50.1000.44.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  44  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8310765--8310818	26	2.0	27	92	3	92	33	5	7	53	1.52
8319512--8319544	2	16.5	2	93	0	57	48	0	3	48	1.17
8322782--8322839	26	2.2	26	84	6	73	18	22	25	32	1.97
8323946--8323984	20	2.0	20	94	0	69	53	10	2	33	1.48
8335216--8335775	120	4.7	120	78	5	515	18	20	14	45	1.85
8335952--8336010	26	2.3	26	84	0	73	25	27	20	27	1.99
8336017--8336068	25	2.1	25	82	7	61	15	25	26	32	1.95
8337175--8337212	18	2.1	18	85	9	51	23	5	2	68	1.23
8337193--8337223	14	2.2	14	94	0	53	25	0	3	70	1.02
8337529--8337568	19	2.1	19	85	0	53	77	0	0	22	0.77
8338628--8339011	49	7.9	48	79	8	298	41	18	12	27	1.87
8338629--8338965	97	3.5	96	78	11	357	40	19	12	27	1.87
8351354--8351400	24	2.0	24	84	8	62	61	0	2	36	1.08
8352825--8352866	19	2.3	18	91	4	66	14	2	0	83	0.75
8352977--8353015	20	2.0	20	89	0	60	56	7	2	33	1.41
8353741--8353775	13	2.9	12	91	8	54	71	0	0	28	0.86
8353741--8353775	6	5.8	6	90	9	54	71	0	0	28	0.86
8358891--8359033	62	2.3	62	83	7	166	37	12	11	37	1.80
8366281--8366339	2	30.5	2	86	6	77	49	3	1	45	1.28
8370325--8370359	15	2.3	15	90	0	52	68	0	5	25	1.11
8370785--8370831	21	2.2	21	88	0	67	38	2	17	42	1.61
8370984--8371008	2	12.5	2	100	0	50	52	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8373127--8373205	38	2.1	38	90	0	122	30	32	7	29	1.85
8373215--8373254	3	13.3	3	100	0	80	67	0	0	32	0.91
8374227--8374252	2	13.0	2	100	0	52	50	0	0	50	1.00
8374388--8374433	21	2.1	22	84	11	60	47	0	0	52	1.00
8374706--8374755	27	2.0	25	85	14	68	26	12	2	60	1.43
8375554--8375624	36	1.9	35	86	8	97	33	35	11	19	1.88
8375621--8375685	30	2.2	30	85	0	94	55	0	0	44	0.99
8375682--8375717	12	3.1	11	88	11	54	66	0	0	33	0.92
8375945--8376055	55	2.0	55	91	0	177	32	13	7	46	1.70
8376200--8376230	16	1.9	16	93	0	53	41	0	3	54	1.16
8387557--8388502	126	7.6	127	79	7	811	36	15	13	35	1.86
8388003--8388054	22	2.4	22	93	0	86	36	23	11	28	1.90
8387998--8388061	22	2.9	22	81	4	76	35	20	14	29	1.92
8387555--8388502	378	2.5	376	79	6	975	36	15	13	35	1.86
8389804--8389836	17	2.1	16	88	11	50	45	39	3	12	1.57
8397747--8397801	25	2.2	25	80	0	65	41	38	5	14	1.69
8397820--8398027	80	2.6	78	82	1	227	46	21	9	23	1.80
8398883--8399173	146	2.0	146	89	2	442	43	6	12	38	1.68
8408703--8408729	4	6.8	4	100	0	54	22	0	0	77	0.76
8412892--8412924	7	4.7	7	85	14	50	84	0	15	0	0.61
8412892--8412924	15	2.3	14	94	5	57	84	0	15	0	0.61
8413744--8413877	69	1.9	69	80	3	153	26	8	19	45	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8413924--8413984	24	2.5	24	86	0	95	27	16	16	39	1.90
8413924--8413994	24	3.0	24	80	12	83	29	15	16	38	1.90
8414175--8414268	38	2.5	38	85	1	127	39	10	12	37	1.78
8414266--8414415	76	2.0	76	95	0	273	40	7	12	39	1.71
8414624--8414684	22	2.7	22	82	5	77	36	9	11	42	1.74
8414659--8414750	45	2.0	45	81	4	105	30	8	16	44	1.77
8414860--8415026	46	3.6	46	78	11	180	29	7	16	46	1.73
8415008--8415141	47	3.0	45	75	7	119	32	11	11	44	1.75
8415207--8415262	25	2.4	23	85	8	69	33	8	16	41	1.79
8415454--8415524	22	3.3	22	74	18	69	38	8	9	43	1.68
8415449--8415550	42	2.4	44	81	6	120	35	8	11	44	1.72
8417185--8417347	88	1.9	87	84	6	222	47	9	6	36	1.62
8418191--8418555	182	2.0	182	99	0	721	39	12	14	33	1.83
8428933--8428972	3	13.3	3	100	0	80	32	0	0	67	0.91
8432217--8432278	28	2.3	27	80	5	70	75	3	17	3	1.07
8433850--8433900	26	1.9	27	88	4	77	43	17	15	23	1.88
8434266--8434372	40	2.7	40	84	8	139	32	8	12	46	1.71
8434347--8434481	40	3.3	39	72	13	112	37	11	11	39	1.79
8434387--8434594	113	1.9	111	84	8	278	35	12	12	39	1.80
8434546--8434839	119	2.5	115	79	8	283	35	18	12	34	1.88
8434633--8434838	40	5.2	39	76	5	173	34	19	13	33	1.90
8436669--8436706	20	1.9	20	88	0	58	21	13	5	60	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8445810--8445875	22	3.0	22	81	0	87	39	12	15	33	1.84
8461357--8461424	30	2.3	30	87	5	93	20	16	23	39	1.91
8466282--8466319	18	2.2	18	85	4	51	34	23	10	31	1.89
8467546--8467621	30	2.6	29	79	8	82	34	18	3	43	1.69
8467583--8467637	29	1.9	29	89	10	87	40	10	3	45	1.57
8472031--8472070	16	2.5	16	79	0	53	12	0	5	82	0.82
8472089--8472152	21	3.1	21	75	8	69	35	21	0	42	1.54
8472089--8472135	19	2.3	20	85	7	60	38	23	0	38	1.55
8472959--8472995	19	1.9	20	88	5	58	48	0	18	32	1.49
8475735--8475831	8	12.8	8	75	14	80	56	0	0	43	0.99
8475740--8475830	15	6.5	15	72	19	81	57	0	0	42	0.99
8475749--8475844	12	8.4	12	69	21	55	59	0	1	39	1.04
8475756--8475828	19	3.6	21	72	20	75	56	0	0	43	0.99
8475727--8475859	72	1.9	68	84	9	162	54	0	1	44	1.09
8475879--8475934	19	3.1	17	76	16	51	41	0	0	58	0.98
8475879--8475948	36	1.9	37	83	13	92	45	1	0	52	1.09
8475926--8475975	26	2.0	25	92	4	82	52	6	0	42	1.26
8478448--8478488	20	2.0	21	85	4	57	26	2	7	63	1.33
8479295--8479335	20	2.0	20	85	0	55	46	2	4	46	1.37
8482709--8482749	11	3.9	11	78	12	50	65	4	4	24	1.32
8484985--8485029	22	2.0	23	86	4	65	20	20	24	35	1.96
8487839--8487863	12	2.1	12	100	0	50	16	20	24	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8488667--8488701	3	11.7	3	87	0	52	65	0	0	34	0.93
8492465--8492490	7	3.7	7	100	0	52	26	0	0	73	0.84
8493504--8493541	5	7.8	5	97	2	69	21	57	0	21	1.40
8494683--8494761	34	2.3	34	76	8	81	36	16	15	31	1.90
8498258--8498303	3	16.3	3	86	13	71	28	0	0	71	0.86
8504462--8504503	3	14.0	3	100	0	84	66	0	0	33	0.92
8506510--8506542	11	2.9	12	86	13	52	72	6	0	21	1.05
8519812--8519837	2	13.0	2	100	0	52	50	0	50	0	1.00
8526039--8526074	18	2.0	18	100	0	72	55	22	0	22	1.44
8541950--8541979	11	2.7	11	94	0	51	80	0	0	20	0.72
8545167--8545225	25	2.2	27	85	8	77	32	8	22	37	1.84
8556753--8556804	6	8.8	6	79	12	63	82	0	5	11	0.82
8558231--8558295	26	2.5	26	84	0	76	33	20	13	32	1.91
8558556--8558610	23	2.4	23	87	0	74	30	18	16	34	1.93
8558597--8558654	23	2.5	22	81	8	71	34	27	15	22	1.94
8558707--8558773	22	3.0	22	86	0	89	35	25	13	25	1.92
8558749--8558969	104	2.1	103	80	2	246	34	15	14	34	1.89
8559273--8559331	29	2.0	29	90	6	93	35	15	10	38	1.81
8564049--8564098	24	2.1	24	96	0	91	32	8	22	38	1.83
8565224--8565310	43	2.0	43	100	0	174	40	9	25	25	1.85
8579137--8579394	44	6.0	44	81	6	280	23	16	19	39	1.91
8579578--8579643	7	9.6	7	78	15	66	21	0	3	75	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8579572--8579636	21	3.1	22	86	6	82	18	0	4	76	0.95
8579671--8579705	15	2.5	15	90	9	56	28	5	0	65	1.15
8579713--8579753	10	4.1	10	84	12	57	2	17	0	80	0.82
8579768--8579884	21	5.7	20	71	13	76	24	3	3	68	1.21
8579818--8579843	12	2.2	12	100	0	52	15	0	7	76	0.99
8579857--8579904	26	1.9	24	83	8	60	22	4	2	70	1.15
8580720--8580839	3	41.0	3	93	5	174	38	0	0	61	0.96
8580857--8580886	15	1.9	16	93	6	53	16	3	0	80	0.85
8580851--8580921	26	2.8	25	79	10	74	15	5	1	77	1.02
8580851--8580921	25	2.8	25	81	10	74	15	5	1	77	1.02

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105