genome.fa.s135.2.7.7.80.10.50.1000.87.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  87  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15311369--15311400	17	1.9	17	93	6	57	18	0	3	78	0.89
15314656--15314720	29	2.2	29	88	2	94	26	4	4	64	1.32
15315304--15315353	26	1.9	26	84	8	66	32	2	8	58	1.39
15315925--15315959	10	3.5	10	92	0	52	74	20	0	5	1.02
15315943--15315985	11	4.0	11	78	6	52	67	13	2	16	1.33
15316374--15316410	19	1.9	19	94	0	65	89	2	8	0	0.58
15316383--15316415	17	1.9	17	93	0	57	87	0	9	3	0.63
15316418--15316676	3	86.7	3	76	11	183	67	2	5	24	1.25
15316781--15316863	26	3.2	26	71	0	76	32	21	24	21	1.98
15316853--15319745	504	5.8	482	88	3	3673	34	16	22	25	1.95
15317727--15317825	52	1.9	52	81	4	119	28	28	25	18	1.98
15318042--15318170	54	2.4	54	80	2	125	36	15	24	24	1.94
15319012--15319127	54	2.1	54	82	6	137	36	11	25	26	1.90
15319039--15319156	54	2.2	54	87	3	166	33	12	25	27	1.92
15319062--15319178	54	2.2	54	83	6	139	35	14	23	26	1.94
15324602--15324640	15	2.6	16	88	8	55	25	2	2	69	1.14
15325610--15325820	5	41.8	5	70	18	93	19	4	3	72	1.15
15325618--15325663	18	2.5	18	82	13	58	28	0	0	71	0.86
15325689--15325756	14	4.5	15	74	12	59	14	4	2	77	1.04
15325708--15325815	24	4.3	24	79	18	121	13	6	3	75	1.13
15325745--15325818	30	2.4	31	86	11	107	13	6	4	75	1.14
15325703--15325824	54	2.3	53	87	10	187	13	6	3	76	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15325838--15326233	61	6.7	57	78	10	393	45	7	11	35	1.69
15325837--15326233	59	6.7	58	80	7	433	45	7	11	35	1.69
15326161--15326195	19	1.9	18	88	11	54	45	11	0	42	1.40
15326168--15326299	68	2.0	68	86	4	187	43	9	10	36	1.71
15334632--15334674	16	2.7	16	88	0	68	90	0	4	4	0.54
15334635--15334674	1	40.0	1	84	0	53	92	0	2	5	0.45
15335819--15336009	43	4.3	43	80	7	213	24	14	19	41	1.89
15336155--15336202	13	3.7	13	75	10	53	14	4	2	79	0.98
15336242--15336294	15	3.7	14	81	16	56	26	3	1	67	1.17
15336329--15336386	22	2.6	23	81	10	66	31	5	5	58	1.42
15337199--15337241	18	2.4	18	84	3	52	25	0	0	74	0.82
15337202--15337300	14	6.6	14	68	22	51	25	2	3	69	1.13
15337270--15337365	6	16.5	6	69	18	60	13	5	3	78	1.05
15337270--15337365	17	5.6	16	75	13	75	13	5	3	78	1.05
15337270--15337365	11	8.3	11	71	20	63	13	5	3	78	1.05
15337265--15337366	30	3.5	29	76	19	88	13	6	2	76	1.10
15337217--15337365	13	11.3	13	66	27	50	18	4	4	73	1.16
15337379--15337538	60	2.7	59	83	6	193	44	7	12	35	1.71
15339511--15339556	14	3.2	15	82	11	53	67	2	0	30	1.03
15339511--15339573	15	4.2	15	76	15	51	65	1	3	30	1.18
15339682--15339728	13	3.1	15	82	11	53	65	10	0	23	1.23
15342226--15342260	3	11.7	3	100	0	70	68	0	0	31	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15345852--15346136	155	1.8	155	83	8	375	40	12	5	41	1.67
15345852--15346136	154	1.9	152	83	8	355	40	12	5	41	1.67
15347322--15347418	51	1.9	51	89	4	151	40	21	11	26	1.87
15347307--15347667	42	8.4	42	83	6	393	45	16	11	26	1.82
15347307--15347667	126	2.8	126	84	5	447	45	16	11	26	1.82
15347972--15348010	20	2.0	20	84	0	51	33	12	12	41	1.82
15348035--15348113	21	3.8	21	89	0	113	39	12	7	40	1.72
15348571--15348743	71	2.4	71	79	1	168	31	26	7	34	1.84
15349380--15349452	20	3.6	19	79	13	67	5	15	0	79	0.90
15349374--15349430	27	2.1	27	80	6	62	7	17	0	75	1.02
15349380--15349460	21	4.0	21	75	20	82	6	16	0	77	0.95
15352310--15352402	28	3.5	26	90	7	111	45	4	20	30	1.70
15352327--15352409	28	3.0	28	96	0	148	43	3	21	31	1.70
15352310--15352419	28	4.3	26	84	10	106	45	4	20	29	1.71
15353483--15353570	45	1.9	46	86	6	126	28	11	9	51	1.68
15354403--15354440	20	1.9	19	94	5	67	47	5	21	26	1.71
15359351--15359392	21	2.0	22	85	4	59	61	7	4	26	1.42
15359989--15360027	20	1.9	19	85	10	51	33	2	5	58	1.33
15360216--15360269	25	2.2	24	87	9	74	79	1	3	14	0.95
15360222--15360261	20	2.1	19	86	9	55	80	2	2	15	0.93
15360216--15360276	25	2.5	24	82	12	70	78	1	4	14	0.99
15361075--15361114	17	2.4	17	91	8	64	75	2	12	10	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15361116--15361185	3	23.7	3	84	11	74	67	1	4	27	1.18
15361317--15361375	26	2.3	26	87	0	82	28	25	23	22	1.99
15362633--15362673	19	2.2	19	87	12	59	24	0	0	75	0.80
15362635--15362686	10	4.9	11	85	4	54	21	0	1	76	0.87
15374921--15375092	50	3.4	51	78	5	181	36	8	14	40	1.76
15377029--15377074	21	2.2	21	81	14	51	71	2	6	19	1.18
15378020--15378086	29	2.3	29	82	5	82	53	2	13	29	1.54
15379168--15379194	2	13.5	2	100	0	54	51	0	0	48	1.00
15380773--15380848	3	25.3	3	91	0	89	25	0	9	65	1.21
15380917--15380974	21	2.9	21	87	5	75	32	6	10	50	1.63
15380988--15381056	19	3.7	19	88	1	95	33	0	8	57	1.29
15382386--15382426	20	2.0	20	90	0	64	29	4	2	63	1.28
15386989--15387154	22	7.4	22	68	14	90	31	6	14	46	1.70
15386982--15387201	44	5.0	43	76	7	197	34	6	14	45	1.70
15386982--15387201	45	5.0	45	78	4	198	34	6	14	45	1.70
15387066--15387179	23	5.1	22	70	12	72	32	7	16	43	1.75
15386982--15387198	90	2.4	89	86	3	285	33	6	14	46	1.70
15387339--15387483	70	2.1	70	79	8	154	35	13	11	39	1.81
15387394--15387551	51	3.0	52	79	5	176	32	14	17	35	1.90
15387616--15387701	18	4.9	18	70	5	50	39	16	9	34	1.80
15389270--15389315	14	3.6	13	77	13	51	8	4	0	86	0.68
15389273--15389333	24	2.4	25	83	5	70	8	9	0	81	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15389371--15389402	12	2.7	12	95	0	55	6	0	25	68	1.12
15389535--15389583	18	2.5	19	80	12	64	34	4	12	48	1.59
15390681--15390724	22	2.1	20	84	16	54	18	2	25	54	1.55
15391687--15391781	30	3.2	29	75	11	86	52	0	5	42	1.24
15395924--15395988	33	2.0	33	90	0	103	26	27	13	32	1.94
15400972--15401001	15	2.0	15	93	0	51	46	0	3	50	1.18
15403070--15403114	16	2.8	16	86	13	65	55	0	0	44	0.99
15403070--15403114	17	2.6	17	89	6	65	55	0	0	44	0.99
15403075--15403126	16	3.4	15	79	12	61	48	0	0	51	1.00
15402538--15403696	622	1.9	628	90	2	1868	47	9	3	39	1.52
15403372--15403423	26	1.9	28	84	7	72	59	7	0	32	1.26
15403759--15403815	26	2.1	27	87	9	82	22	66	1	8	1.29
15405291--15405336	23	2.0	23	82	0	56	65	2	0	32	1.05
15408606--15408671	29	2.3	29	84	5	82	48	1	0	50	1.10
15409265--15409289	13	1.9	13	100	0	50	44	0	0	56	0.99
15409268--15409308	17	2.3	18	83	4	57	36	0	0	63	0.95
15432060--15432934	237	3.7	237	81	4	996	35	12	12	39	1.80
15432838--15432997	63	2.5	62	80	8	182	35	15	12	36	1.85
15432684--15433236	301	1.8	302	83	2	745	35	13	12	38	1.82
15432931--15433387	239	1.9	239	84	2	605	37	11	11	39	1.77
15434198--15434317	28	4.2	28	91	2	195	19	2	27	50	1.60
15434263--15434402	25	5.4	24	83	9	111	23	6	25	45	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15434336--15434403	12	5.5	12	73	13	57	25	7	25	42	1.80
15437643--15438173	177	3.0	175	82	6	581	37	15	13	34	1.86
15437643--15438143	180	2.8	178	82	5	602	37	15	12	33	1.86
15437954--15438603	302	2.1	305	86	2	898	36	13	14	36	1.85
15440473--15440509	2	18.5	2	100	0	74	48	0	0	51	1.00
15440770--15440816	23	2.0	24	88	8	71	59	4	4	31	1.36
15441670--15441694	13	1.9	13	100	0	50	52	0	0	48	1.00
15442087--15442140	26	2.1	26	100	0	108	51	24	11	12	1.72
15445704--15445745	22	2.0	21	85	4	57	50	0	0	50	1.00
15445774--15445820	14	2.9	16	75	18	53	55	2	0	42	1.12

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105