genome.fa.s135.2.7.7.80.10.50.1000.17.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  17  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3549828--3549861	17	1.9	17	88	5	50	38	0	2	58	1.13
3549840--3549889	21	2.4	20	84	15	66	42	2	0	56	1.11
3553065--3553118	27	2.0	27	86	13	76	51	1	0	46	1.11
3553067--3553129	28	2.3	27	81	10	74	53	1	0	44	1.10
3553067--3553142	29	2.7	26	80	8	71	53	3	0	42	1.19
3557145--3557170	2	13.0	2	100	0	52	50	0	50	0	1.00
3558771--3558847	38	2.0	38	94	0	136	27	11	18	42	1.84
3560634--3560785	76	2.0	76	98	0	295	29	19	21	28	1.98
3561076--3561115	11	3.5	11	83	6	53	67	2	5	25	1.23
3572980--3573053	20	3.5	21	76	20	82	55	5	4	35	1.42
3573050--3573093	21	2.1	21	86	0	61	65	4	2	27	1.23
3572977--3573143	19	7.9	19	70	19	91	56	4	2	36	1.34
3572977--3573144	9	17.0	9	67	22	63	55	4	2	36	1.34
3573239--3573290	24	2.1	24	82	3	59	57	7	0	34	1.27
3573271--3573374	18	5.7	18	71	14	79	58	5	0	34	1.28
3573307--3573377	8	7.9	8	74	20	52	59	7	0	33	1.25
3573308--3573378	20	3.8	20	80	7	71	57	8	0	33	1.29
3573271--3573378	19	5.8	19	76	14	91	57	6	0	35	1.31
3573425--3573463	20	2.0	20	94	0	69	28	0	2	69	1.02
3573438--3573478	15	2.7	15	88	11	57	31	0	0	68	0.90
3573400--3573424	11	2.3	11	100	0	50	52	0	0	48	1.00
3573932--3574064	9	13.8	9	72	13	63	34	3	4	57	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3573952--3574047	28	3.3	27	78	11	93	34	4	3	58	1.33
3573952--3574068	10	12.3	9	73	9	81	35	3	2	58	1.29
3573644--3574068	19	22.0	19	64	14	104	37	2	5	54	1.36
3574361--3574529	82	2.0	83	95	2	304	37	5	9	47	1.59
3574683--3574728	20	2.3	19	82	17	58	28	0	2	69	1.00
3574937--3575028	31	2.8	32	90	6	141	29	8	14	47	1.73
3576717--3576765	21	2.4	20	89	3	71	42	6	8	42	1.59
3583207--3583275	27	2.5	28	86	4	97	63	8	2	24	1.37
3584435--3584470	18	2.0	18	94	0	63	38	0	2	58	1.13
3584438--3584485	8	5.8	8	80	9	51	39	0	2	58	1.10
3584506--3584649	77	1.9	76	84	5	193	54	6	4	34	1.47
3585222--3585265	22	2.0	23	90	4	72	56	0	0	43	0.99
3592081--3592126	24	1.9	24	81	0	56	45	8	8	36	1.66
3592699--3592733	18	1.9	18	94	0	61	25	8	5	60	1.49
3592853--3592892	19	2.0	21	85	9	57	25	10	5	60	1.49
3594543--3594572	11	2.8	11	95	5	53	20	0	0	80	0.72
3594543--3594572	5	5.8	5	92	7	51	20	0	0	80	0.72
3595428--3595491	26	2.5	26	85	10	78	42	4	9	43	1.57
3595426--3595631	100	2.1	100	96	1	378	39	6	8	45	1.61
3595528--3595591	26	2.5	25	82	10	67	42	3	7	46	1.48
3595549--3595595	11	3.9	11	80	20	58	42	2	4	51	1.33
3596604--3596636	5	6.6	5	86	13	50	18	0	0	81	0.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3596604--3596635	14	2.2	15	94	5	57	18	0	0	81	0.70
3597159--3597201	20	2.1	21	86	4	61	60	0	37	2	1.10
3597443--3597502	24	2.5	23	81	10	68	13	0	16	70	1.18
3607029--3607071	22	1.9	23	90	4	70	37	4	2	55	1.33
3607213--3607273	30	2.1	29	91	8	99	52	3	8	36	1.48
3607651--3607694	19	2.4	19	92	3	72	47	0	0	52	1.00
3608199--3608228	13	2.3	13	94	0	51	90	10	0	0	0.47
3608193--3608228	12	2.8	13	87	8	56	83	16	0	0	0.65
3611893--3611922	10	3.0	10	90	0	51	86	0	0	13	0.57
3614388--3614436	21	2.3	21	86	6	64	59	6	6	28	1.46
3614424--3614482	29	2.0	28	81	18	68	54	3	6	35	1.44
3616044--3616094	20	2.5	20	83	0	66	47	11	11	29	1.76
3622559--3622617	25	2.4	25	97	0	109	25	15	22	37	1.93
3624441--3624534	36	2.6	36	74	5	91	29	12	7	50	1.68
3624936--3624968	14	2.4	14	94	0	57	36	0	0	63	0.95
3634508--3634559	16	3.2	16	72	0	50	21	1	28	48	1.61
3634497--3634561	32	2.0	32	88	5	96	24	3	26	46	1.67
3635499--3635523	13	1.9	13	100	0	50	4	8	0	88	0.64
3635623--3635700	22	3.7	21	87	3	68	2	7	25	64	1.33
3635648--3635700	22	2.4	22	100	0	106	3	9	30	56	1.49
3635768--3635828	24	2.5	24	94	5	106	27	9	42	19	1.83
3637767--3637804	6	6.7	6	91	8	53	2	0	7	89	0.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3637767--3637805	11	3.5	11	89	6	60	2	0	7	89	0.56
3637909--3637952	23	2.0	22	86	4	61	25	11	45	18	1.82
3639025--3639104	16	4.9	16	73	13	65	18	3	26	51	1.63
3639030--3639109	32	2.5	32	89	0	124	17	2	28	51	1.58
3641034--3641077	22	2.0	22	90	0	70	29	20	22	27	1.99
3640883--3641089	109	1.9	110	86	1	299	38	16	19	25	1.92
3641069--3641129	21	2.8	22	72	20	65	31	13	26	29	1.93
3641047--3641129	43	1.9	43	92	0	139	31	15	25	27	1.96
3641047--3641120	22	3.4	22	70	17	64	29	16	25	28	1.97
3640937--3641240	152	2.0	152	85	3	416	34	16	22	25	1.95
3641089--3641345	110	2.3	110	89	2	392	35	17	22	24	1.96
3640869--3641692	242	3.3	258	80	11	886	36	17	21	24	1.94
3641306--3641368	23	2.8	23	87	2	92	28	19	25	26	1.98
3641196--3641476	132	2.1	132	87	4	399	33	18	22	24	1.97
3641062--3641692	242	2.6	240	88	4	894	35	17	21	24	1.95
3641324--3641564	109	2.2	110	80	5	292	36	18	20	24	1.95
3641549--3641614	21	3.1	21	72	12	71	30	16	27	25	1.97
3641440--3641689	131	1.9	130	83	2	322	37	16	21	24	1.93
3641680--3642000	121	2.7	121	88	1	466	35	15	15	33	1.90
3642510--3643588	33	32.8	33	82	5	1100	33	16	20	29	1.95
3642499--3643590	132	8.3	132	88	2	1434	33	16	20	29	1.94
3645579--3645609	14	2.3	14	94	5	55	3	6	0	90	0.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3653779--3653821	16	2.6	17	85	3	52	27	11	6	53	1.63
3662141--3662178	20	1.9	20	88	0	58	31	2	13	52	1.54
3684145--3684185	18	2.3	18	86	0	55	48	2	2	46	1.28
3685149--3685189	21	1.9	22	95	5	75	29	48	4	17	1.67
3686704--3686750	16	2.9	15	87	12	58	76	0	4	19	0.95
3695177--3695204	12	2.3	12	100	0	56	25	17	0	57	1.41
3701848--3701947	49	2.0	49	96	0	182	31	23	8	38	1.83
3707242--3707310	31	2.3	29	85	5	93	42	2	0	55	1.15
3707242--3707330	29	3.0	29	83	3	106	37	2	2	58	1.23
3708264--3708344	24	3.3	23	80	13	74	32	2	2	62	1.21
3709690--3709728	14	2.8	14	92	0	60	66	0	2	30	1.05
3718679--3718731	22	2.3	24	78	12	67	54	3	0	41	1.18
3726369--3726417	4	12.2	4	91	0	53	40	0	10	48	1.37
3736860--3736932	37	2.0	37	94	0	128	31	21	13	32	1.93
3740811--3740854	21	2.0	23	91	8	74	47	6	0	45	1.29
3740815--3740865	23	2.2	23	83	13	61	50	5	3	39	1.45
3740926--3740968	22	2.0	20	83	16	52	39	2	6	51	1.42
3742131--3742177	18	2.5	20	80	16	55	48	8	0	42	1.33
3742480--3742540	26	2.5	25	79	15	65	52	0	0	47	1.00
3742484--3742535	21	2.7	19	80	13	70	48	0	0	51	1.00
3742526--3742569	23	2.0	22	90	4	70	61	0	0	38	0.96
3743411--3743460	17	2.9	17	79	5	57	50	2	0	48	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3748142--3748185	20	2.1	21	91	4	72	36	18	11	34	1.86
3752852--3752911	25	2.3	27	82	5	70	53	1	0	45	1.10
3762317--3762343	12	2.2	12	100	0	54	33	0	0	66	0.92
3767559--3767585	2	13.5	2	100	0	54	51	48	0	0	1.00
3771405--3771453	3	16.0	3	91	4	80	65	0	34	0	0.93
3779283--3779330	23	2.0	25	84	11	66	50	0	0	50	1.00
3779897--3779927	16	2.0	16	93	6	55	51	0	3	45	1.17
3780635--3780692	31	1.9	30	85	3	80	51	1	1	44	1.21
3781272--3781301	13	2.2	13	94	5	51	70	0	0	30	0.88
3781272--3781301	7	4.4	7	91	8	53	70	0	0	30	0.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105