genome.fa.s135.2.7.7.80.10.50.1000.23.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  23  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4702560--4703442	302	2.9	304	80	5	774	37	13	12	36	1.83
4708958--4709009	17	2.9	18	75	11	54	69	0	5	25	1.10
4710132--4710197	24	2.9	23	76	14	73	62	0	4	33	1.16
4710130--4710185	24	2.3	24	84	6	78	62	0	1	35	1.06
4710511--4710541	2	16.0	2	93	6	55	48	0	0	51	1.00
4720399--4720465	33	2.0	33	91	0	107	46	8	10	34	1.70
4722208--4722272	24	2.7	24	90	0	94	30	16	15	36	1.90
4723217--4723242	5	5.2	5	100	0	52	80	0	0	19	0.71
4724244--4724273	10	3.1	10	95	4	53	36	0	0	63	0.95
4730090--4730116	4	6.8	4	100	0	54	48	0	0	51	1.00
4731375--4731415	21	2.0	21	85	9	57	43	4	0	51	1.23
4731491--4731529	21	1.9	21	89	5	62	28	0	5	66	1.12
4731879--4731904	5	5.2	5	100	0	52	19	0	0	80	0.71
4732815--4732865	23	2.2	23	82	0	57	29	3	0	66	1.09
4734194--4734528	58	5.8	57	91	6	534	34	12	8	43	1.74
4734194--4734523	114	2.9	114	92	5	551	34	13	8	44	1.74
4734183--4734534	172	2.0	173	92	4	586	32	12	9	45	1.73
4734600--4734646	24	2.0	24	86	0	67	82	6	0	10	0.82
4734968--4735005	20	1.9	20	94	0	67	23	18	26	31	1.97
4734969--4735013	20	2.3	20	88	3	65	26	22	24	26	2.00
4735066--4735136	31	2.3	31	90	0	106	25	25	23	25	2.00
4735910--4735999	1	90.0	1	82	0	90	2	0	8	88	0.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4735910--4735999	19	4.9	18	85	8	119	2	0	8	88	0.58
4735910--4735999	39	2.4	39	88	5	132	2	0	8	88	0.58
4736006--4736410	41	9.8	42	92	2	648	36	23	17	22	1.94
4736006--4736394	83	4.7	83	95	1	678	36	23	17	22	1.95
4736006--4736396	124	3.2	123	94	2	678	36	23	17	22	1.95
4737439--4737506	8	8.8	8	91	8	106	10	13	0	76	1.02
4737439--4737506	15	4.4	16	89	10	106	10	13	0	76	1.02
4737449--4737505	7	7.7	7	90	7	78	10	12	0	77	1.00
4744727--4744773	15	3.1	15	90	3	76	48	4	25	21	1.68
4747937--4748387	57	7.6	57	84	9	584	33	15	8	42	1.77
4747937--4748385	117	3.8	119	91	5	673	33	15	8	42	1.77
4748867--4748905	20	2.0	20	94	0	69	23	17	25	33	1.96
4748868--4748912	20	2.3	20	88	3	65	26	20	24	28	1.99
4749044--4749097	25	2.2	24	83	6	63	40	18	5	35	1.74
4751812--4751852	21	2.0	21	85	9	57	70	0	0	29	0.87
4755966--4756004	20	2.0	20	94	0	69	33	10	12	43	1.77
4761238--4761358	63	1.9	63	91	0	197	44	9	12	33	1.74
4771851--4771902	25	2.0	27	88	7	81	30	1	1	65	1.14
4777528--4777566	16	2.4	16	95	4	69	30	15	5	48	1.66
4779062--4779269	112	1.9	109	81	9	235	37	8	8	46	1.64
4781276--4781362	22	4.0	22	78	14	90	41	13	8	36	1.74
4781305--4781387	22	3.8	21	76	12	78	39	14	8	37	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4781409--4781446	18	2.1	19	90	5	60	44	13	10	31	1.77
4781609--4781654	19	2.5	19	85	3	58	45	13	15	26	1.82
4781877--4781965	42	2.1	43	85	6	119	43	15	10	30	1.80
4781861--4781957	21	4.4	22	74	7	72	42	12	11	34	1.78
4781876--4781968	44	2.2	43	82	9	118	44	15	9	31	1.78
4781911--4782161	46	5.5	46	78	6	235	41	16	7	34	1.77
4782035--4782145	24	4.8	24	65	17	56	42	16	6	35	1.73
4782135--4782174	21	1.9	21	89	0	62	50	17	0	32	1.47
4784106--4784134	13	2.2	13	100	0	58	31	0	13	55	1.39
4784641--4784693	26	2.1	25	82	3	61	47	0	5	47	1.26
4788267--4788326	28	2.1	30	81	9	72	5	18	1	75	1.07
4789666--4789706	17	2.5	17	80	11	50	29	19	0	51	1.47
4791516--4791550	2	17.5	2	93	0	61	45	0	2	51	1.16
4791674--4791740	32	2.0	34	82	11	84	46	0	0	53	1.00
4802828--4802877	3	16.7	3	84	15	68	30	2	0	68	1.01
4802833--4802893	12	5.0	12	86	7	63	31	4	0	63	1.15
4802844--4802893	25	2.0	25	85	11	68	32	6	0	62	1.20
4803833--4803865	16	2.1	16	100	0	66	27	24	12	36	1.91
4813142--4813198	15	3.6	15	81	11	69	12	17	0	70	1.17
4813142--4813198	16	3.6	16	81	9	71	12	17	0	70	1.17
4813820--4813844	11	2.3	11	100	0	50	84	0	16	0	0.63
4814574--4814614	17	2.4	17	87	0	55	53	2	0	43	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4814708--4814749	21	2.0	22	85	4	59	54	11	2	30	1.49
4814746--4814790	21	2.0	23	87	12	67	57	4	2	35	1.31
4814835--4814911	40	1.9	40	84	10	104	46	6	0	46	1.28
4814837--4814931	40	2.4	39	80	8	93	50	7	0	42	1.30
4814972--4815064	33	2.8	33	78	3	107	50	5	0	44	1.25
4815037--4815091	18	3.0	19	76	7	60	54	5	0	40	1.23
4815098--4815176	20	4.2	19	81	10	92	55	6	0	37	1.25
4815098--4815176	38	2.1	37	85	2	104	55	6	0	37	1.25
4815126--4815186	19	3.2	19	81	6	61	62	6	0	31	1.21
4815107--4815186	38	2.1	38	83	4	99	58	5	0	36	1.20
4815390--4815430	17	2.4	17	83	0	55	53	2	2	41	1.27
4815503--4815549	20	2.3	21	85	3	60	65	8	2	23	1.31
4815830--4815901	9	7.7	9	85	10	74	27	1	2	68	1.12
4815815--4815901	10	9.1	9	82	10	68	26	1	8	64	1.28
4816206--4816270	32	2.0	32	96	0	121	23	20	4	52	1.65
4816695--4816746	7	6.9	7	75	16	50	11	19	0	69	1.18
4816701--4816748	24	2.0	24	88	8	71	14	18	0	66	1.25
4816695--4816746	15	3.4	14	73	17	50	11	19	0	69	1.18
4818023--4818067	23	2.0	23	81	0	54	44	0	4	51	1.21
4822821--4823294	138	3.4	137	82	5	508	26	9	12	50	1.71
4824891--4824921	16	1.9	16	93	0	53	80	0	19	0	0.71
4826571--4826672	6	16.3	6	71	25	70	74	0	2	21	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4826590--4826680	5	18.0	5	72	20	57	76	1	1	20	0.91
4826596--4826671	13	5.8	12	82	14	80	76	1	0	22	0.86
4827232--4827256	12	2.1	12	100	0	50	44	24	8	24	1.80
4827367--4827436	22	3.2	22	79	0	86	35	14	12	37	1.84
4827493--4827580	22	4.0	22	78	7	90	32	14	15	36	1.89
4827498--4827580	44	1.9	43	90	2	130	33	15	15	34	1.90
4827510--4827603	43	2.2	44	80	5	102	34	20	12	32	1.90
4827612--4827658	22	2.1	22	88	0	67	34	23	10	31	1.89
4827665--4827724	21	2.8	22	79	5	68	38	18	13	30	1.89
4828506--4828543	20	1.9	20	84	10	51	50	18	2	28	1.61
4828497--4828544	21	2.3	21	78	7	53	56	14	4	25	1.56
4828815--4828866	22	2.3	23	78	15	56	23	1	1	73	1.04
4829321--4829353	15	2.2	16	89	10	52	72	15	6	6	1.24
4831611--4831650	16	2.4	16	87	8	53	65	0	0	35	0.93
4831618--4831653	16	2.3	15	95	4	63	63	0	0	36	0.94
4831567--4831746	87	2.1	86	79	12	190	59	3	4	32	1.35
4831703--4831773	27	2.6	27	81	0	79	60	2	2	33	1.26
4831942--4832011	23	2.8	23	73	22	61	50	2	1	45	1.25
4832875--4832964	47	2.0	45	88	4	135	48	2	0	48	1.13
4832807--4832989	15	11.3	15	64	19	57	48	2	1	47	1.23
4832850--4832989	47	2.9	45	75	8	127	51	2	0	45	1.21
4833216--4833268	25	2.1	25	82	6	63	50	3	7	37	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4833334--4833371	19	2.1	18	85	14	51	50	2	0	47	1.15
4834744--4834778	17	2.1	17	100	0	70	51	0	0	48	1.00
4834747--4834790	17	2.5	17	85	7	52	59	0	2	38	1.10
4836051--4836115	26	2.5	26	92	5	105	33	6	15	44	1.71
4838474--4838547	36	2.1	36	97	0	139	20	16	21	41	1.90
4840954--4841013	6	10.0	6	88	0	57	45	33	20	1	1.61
4840957--4840988	3	10.7	3	93	0	55	37	34	28	0	1.57
4840957--4841009	9	6.2	9	80	12	58	43	33	20	1	1.63
4844600--4844637	3	12.7	3	94	0	67	34	63	0	2	1.09
4849815--4849848	14	2.5	13	85	4	50	88	2	8	0	0.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105