genome.fa.s135.2.7.7.80.10.50.1000.62.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  62  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11175382--11175432	22	2.3	22	86	3	66	21	21	3	52	1.62
11183166--11357396	35	4957.4	35	68	11	30698	19	15	12	52	1.75
11184922--11184982	18	3.4	18	69	13	54	18	18	9	54	1.70
11185143--11185363	107	2.1	106	81	7	252	23	16	8	51	1.72
11185572--11185641	31	2.2	31	82	10	79	15	14	11	58	1.63
11186119--11186488	172	2.1	174	88	4	559	19	14	12	52	1.74
11186557--11186691	69	1.9	70	84	1	182	17	11	15	55	1.69
11186564--11186708	69	2.1	70	81	3	168	19	11	14	54	1.70
11186841--11186985	34	4.3	31	80	13	103	22	14	9	53	1.70
11187357--11187758	211	1.9	210	82	4	497	20	17	11	50	1.77
11187738--11187871	66	2.1	65	81	5	155	19	11	11	57	1.64
11188465--11188651	36	5.4	35	67	10	96	19	13	10	55	1.67
11189215--11189884	139	4.8	137	74	10	384	20	15	11	52	1.73
11189897--11189985	17	5.0	19	73	15	91	17	14	11	56	1.67
11190468--11190521	18	3.1	18	68	24	51	18	16	14	50	1.79
11190422--11190832	139	2.9	140	77	7	327	19	15	9	54	1.69
11190827--11190876	24	2.1	24	100	0	100	16	12	8	64	1.49
11190791--11190911	59	2.0	60	85	4	165	16	12	11	59	1.61
11190698--11191014	164	1.9	164	82	5	390	19	13	11	55	1.68
11191716--11192110	173	2.3	172	80	6	411	19	16	13	50	1.77
11192637--11193066	176	2.4	175	81	3	477	20	16	11	50	1.76
11195674--11195725	17	2.9	18	69	25	56	19	15	7	57	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11195815--11196265	247	1.8	246	78	4	514	19	15	11	53	1.73
11197301--11197367	29	2.3	29	100	0	134	22	13	5	58	1.57
11197308--11197366	18	3.8	17	68	32	51	23	13	6	55	1.62
11197304--11197398	29	3.1	31	87	4	113	20	13	9	56	1.64
11197884--11197968	36	2.3	35	78	7	89	14	8	14	63	1.51
11200896--11201407	173	2.9	174	80	6	461	19	15	12	52	1.74
11201148--11201337	104	1.8	106	82	4	251	21	15	11	51	1.75
11204366--11204767	178	2.3	179	82	6	489	20	17	11	50	1.76
11204506--11204767	143	1.8	142	79	4	303	19	16	11	52	1.74
11204729--11204820	47	2.0	47	91	0	148	28	14	10	46	1.78
11206179--11206240	29	2.1	29	82	5	72	16	11	16	56	1.67
11206805--11206856	17	3.0	17	75	18	54	23	9	9	57	1.60
11207815--11207911	36	2.7	35	82	1	95	20	16	10	52	1.72
11208086--11208276	104	1.8	104	80	4	233	16	15	14	54	1.72
11209049--11209232	68	2.7	70	75	13	166	22	16	9	51	1.73
11210142--11210212	36	2.0	36	85	0	97	22	16	11	49	1.78
11210425--11210548	63	2.0	63	81	1	149	20	15	16	48	1.81
11210638--11210724	36	2.4	36	81	14	117	16	10	16	57	1.65
11210884--11211159	103	2.6	104	78	10	258	21	17	10	50	1.76
11211011--11211293	139	2.0	138	79	6	304	20	14	12	51	1.75
11211575--11211800	102	2.2	103	81	4	251	20	15	9	53	1.70
11211549--11213498	106	18.5	105	70	10	304	20	15	12	51	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11212964--11213053	47	1.9	47	93	0	153	26	13	14	45	1.82
11214170--11214401	106	2.2	105	80	6	247	19	17	12	50	1.77
11214341--11214530	99	1.9	99	80	2	220	17	15	15	51	1.76
11216480--11216741	106	2.5	106	79	8	266	20	16	9	53	1.70
11216653--11216848	104	1.9	105	80	3	234	21	16	11	50	1.77
11217281--11217452	68	2.5	68	78	12	172	21	13	10	54	1.69
11217147--11217539	208	1.9	208	80	6	465	19	15	11	52	1.73
11218739--11218839	31	3.1	31	76	9	103	18	15	11	53	1.72
11220076--11220384	107	2.9	107	75	3	275	19	13	11	54	1.70
11220536--11220720	98	1.9	98	82	8	234	22	17	11	48	1.79
11220662--11220946	104	2.7	104	74	7	254	18	14	14	51	1.76
11221000--11221217	106	2.1	106	79	4	226	20	15	12	51	1.75
11221033--11221359	176	1.9	176	80	7	387	20	14	12	52	1.74
11222915--11223149	106	2.2	105	82	7	271	20	14	14	51	1.75
11223398--11223594	104	1.9	104	81	4	236	18	13	15	52	1.75
11225577--11225766	106	1.8	105	81	1	236	23	18	9	48	1.77
11225876--11226115	106	2.3	107	81	6	274	19	13	14	52	1.74
11225562--11226328	141	5.5	141	76	6	513	20	15	12	51	1.75
11226689--11226755	31	2.3	29	78	12	82	17	17	10	53	1.71
11228022--11228523	106	4.8	104	75	10	278	18	15	13	52	1.74
11227881--11228550	71	9.6	68	70	11	231	19	15	13	52	1.74
11228234--11228560	104	3.1	104	78	9	290	19	14	12	52	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11229478--11229688	107	2.0	107	90	1	334	19	16	7	56	1.64
11230388--11230557	72	2.4	72	76	7	170	17	12	12	57	1.66
11231157--11231348	106	1.8	105	80	3	233	21	19	9	48	1.77
11231320--11231986	71	9.4	70	70	11	189	18	15	13	52	1.74
11231372--11231637	141	1.8	141	81	9	322	18	14	15	51	1.76
11231529--11231611	41	2.0	41	85	0	112	18	18	9	54	1.70
11231373--11231685	147	2.2	147	77	12	310	18	14	14	52	1.74
11233897--11234089	97	2.0	98	80	5	221	18	15	15	51	1.77
11234965--11235156	104	1.8	104	83	4	253	18	14	15	52	1.75
11235603--11235728	67	1.9	67	81	0	153	23	15	11	50	1.76
11235966--11236296	176	1.9	176	79	5	382	19	14	11	53	1.72
11235931--11236450	211	2.5	209	78	5	503	20	14	12	52	1.73
11235903--11236474	246	2.3	246	77	5	532	20	15	12	52	1.74
11238692--11238762	32	2.2	32	82	9	83	19	16	9	53	1.71
11239668--11239826	72	2.2	70	83	7	196	16	10	15	57	1.65
11239563--11239960	104	3.8	102	71	13	265	19	14	12	53	1.73
11239972--11240158	99	1.9	99	80	2	223	18	17	13	50	1.78
11240404--11240621	106	2.1	106	79	4	226	20	15	11	51	1.75
11240727--11240822	47	2.0	47	89	0	147	26	10	13	50	1.74
11240834--11241178	107	3.3	103	83	7	367	18	15	10	55	1.67
11241805--11241835	15	2.1	15	93	0	53	16	3	6	74	1.16
11242085--11242442	106	3.4	106	76	8	302	20	16	12	50	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11242621--11242826	102	2.0	101	80	0	232	19	12	15	52	1.73
11243085--11243275	104	1.8	104	83	8	255	21	15	12	49	1.78
11243416--11244061	211	3.1	211	76	9	503	20	15	10	53	1.71
11244120--11244419	165	1.8	166	81	7	378	20	16	13	50	1.78
11244500--11244562	30	2.1	30	85	5	83	12	15	17	53	1.72
11245696--11246343	281	2.3	281	80	4	666	21	17	9	51	1.73
11245753--11246362	246	2.5	244	77	7	574	21	16	9	52	1.71
11246666--11247110	172	2.6	173	80	6	472	20	17	9	52	1.72
11247198--11247259	31	2.0	31	93	0	106	19	12	12	54	1.70
11247023--11247423	207	1.9	205	79	6	445	18	16	12	51	1.75
11247299--11247642	104	3.3	104	75	6	275	19	15	12	52	1.75
11247706--11247973	103	2.6	104	78	8	260	19	15	13	51	1.75
11247859--11248026	69	2.4	70	80	4	196	20	16	11	51	1.75
11248273--11248785	176	2.9	174	78	8	542	20	15	10	52	1.72
11253840--11253907	30	2.3	29	77	5	73	20	16	8	54	1.68
11253787--11254061	98	2.8	98	76	5	234	20	15	13	50	1.77
11253787--11254177	100	3.9	98	72	9	265	20	15	12	51	1.75
11253936--11254186	68	3.7	68	74	9	203	20	15	11	52	1.73
11253950--11254212	138	1.9	133	81	8	307	21	15	11	51	1.75
11254351--11254666	173	1.8	174	80	6	390	19	16	12	51	1.75
11254893--11254954	29	2.2	29	79	2	72	16	11	14	58	1.64
11254786--11255060	133	2.1	134	80	4	324	20	14	13	52	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11254977--11255300	160	2.0	160	96	0	603	20	12	13	53	1.71
11255685--11255873	104	1.8	103	89	3	299	16	15	12	55	1.70
11256019--11256355	176	1.9	175	80	1	397	21	16	10	51	1.75
11256323--11256531	68	3.0	67	77	8	197	22	15	8	53	1.69
11256197--11256603	138	2.9	138	80	5	376	22	14	9	52	1.71
11256283--11256797	138	3.7	135	78	10	398	20	15	10	53	1.71
11257235--11358419	176	578.2	175	69	13	4012	19	15	12	52	1.75
11258162--11258353	68	2.9	67	81	6	217	22	11	10	54	1.68
11258791--11259033	69	3.5	70	75	9	196	17	14	15	52	1.75
11259350--11259707	141	2.5	138	76	8	319	21	17	11	50	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105