genome.fa.s135.2.7.7.80.10.50.1000.84.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  84  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14729570--14729599	2	15.0	2	92	0	51	53	0	0	46	1.00
14733330--14733370	21	2.0	21	90	0	64	26	2	19	51	1.59
14733448--14733502	15	3.7	15	85	4	67	29	3	21	45	1.69
14733449--14733527	29	2.7	29	78	2	86	31	3	18	45	1.68
14733648--14733707	3	20.3	3	96	3	113	31	0	0	68	0.90
14734527--14734561	18	1.9	18	94	0	61	62	2	2	31	1.24
14734667--14734827	76	2.0	80	92	5	276	55	1	3	39	1.23
14734914--14734966	14	3.7	14	80	5	52	50	22	1	24	1.59
14734918--14734984	29	2.4	28	77	5	80	44	25	1	28	1.63
14735032--14735094	22	2.9	22	72	15	67	49	33	1	15	1.55
14735102--14735132	16	2.0	16	93	6	55	51	12	0	35	1.40
14736854--14736894	19	2.2	19	95	0	73	85	7	7	0	0.75
14741652--14741678	7	3.9	7	100	0	54	88	0	0	11	0.50
14743779--14744027	133	1.9	133	80	3	295	27	16	14	40	1.88
14744204--14744468	131	2.0	132	81	6	306	23	18	17	40	1.92
14744125--14744597	241	2.0	243	82	2	594	23	16	17	42	1.89
14744331--14744591	110	2.4	110	83	3	330	24	16	18	40	1.90
14744122--14744649	241	2.2	241	81	3	587	23	16	17	42	1.88
14744625--14744968	37	9.4	36	71	9	194	17	18	15	47	1.83
14744732--14744952	110	2.0	111	84	6	288	18	16	14	50	1.79
14744636--14744943	147	2.1	147	84	3	388	17	18	15	48	1.81
14746389--14746427	15	2.8	14	85	11	53	17	0	2	79	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14746524--14746571	20	2.6	18	86	6	60	66	6	2	25	1.26
14746524--14746577	18	2.8	20	86	5	67	64	5	3	25	1.32
14746668--14746703	12	3.0	12	87	0	54	77	0	0	22	0.76
14746687--14746731	24	2.0	23	86	8	65	60	2	2	35	1.22
14746793--14746841	19	2.6	19	87	3	73	28	0	22	48	1.50
14746937--14747027	43	2.1	43	84	8	114	48	35	1	15	1.52
14746952--14747040	22	4.1	21	76	12	83	51	32	1	14	1.50
14747015--14747047	14	2.3	15	89	5	50	57	30	0	12	1.35
14747005--14747056	22	2.4	22	83	6	61	53	28	0	17	1.44
14749444--14749512	32	2.3	31	85	7	88	52	4	0	43	1.21
14750395--14750455	31	2.0	31	90	3	97	47	13	8	31	1.71
14750395--14750452	15	3.8	15	81	4	71	46	13	8	31	1.74
14750550--14750585	15	2.4	15	90	0	54	33	19	13	33	1.91
14751695--14751770	34	2.2	34	85	0	98	39	13	13	34	1.83
14751809--14751841	16	2.0	17	88	5	50	33	6	3	57	1.38
14753736--14753764	14	2.1	14	93	6	51	62	20	3	13	1.46
14758478--14758522	2	22.5	2	86	0	63	48	4	0	46	1.22
14766252--14766288	3	12.3	3	100	0	74	64	0	0	35	0.94
14767814--14767864	18	3.2	17	81	15	56	64	1	1	31	1.15
14769299--14769426	64	2.0	64	98	0	247	38	4	17	39	1.71
14769715--14769750	17	2.1	19	85	15	51	25	5	5	63	1.38
14777258--14777297	21	1.9	21	84	0	53	55	10	15	20	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14779876--14779913	17	2.2	18	85	4	51	73	0	21	5	1.02
14787638--14787703	30	2.2	30	86	0	96	48	0	10	40	1.38
14791215--14791250	17	2.0	19	89	10	58	44	16	5	33	1.71
14794367--14794411	16	2.9	15	83	9	56	84	6	6	2	0.85
14800715--14800764	22	2.3	22	92	0	82	36	22	14	28	1.92
14801102--14801170	5	14.8	5	80	8	51	82	10	4	2	0.91
14801090--14801170	23	3.6	22	83	9	101	82	9	3	3	0.91
14801563--14801608	22	2.0	23	87	4	67	63	0	8	28	1.24
14803315--14803345	2	15.5	2	100	0	62	48	0	0	51	1.00
14807622--14807664	19	2.1	21	84	16	56	34	2	4	58	1.32
14808413--14808440	2	14.0	2	100	0	56	0	50	0	50	1.00
14808538--14808577	19	2.1	19	85	0	53	40	0	0	60	0.97
14808606--14808635	12	2.4	12	94	5	51	46	0	3	50	1.18
14808607--14808669	14	4.6	14	76	7	60	46	0	3	50	1.17
14808737--14808798	29	2.1	29	87	0	88	40	3	3	53	1.33
14809360--14809393	15	2.2	16	89	5	52	61	0	0	38	0.96
14810356--14810407	24	2.2	23	82	3	59	30	7	1	59	1.36
14811705--14811734	15	2.0	15	93	0	51	50	33	16	0	1.46
14812850--14812876	3	9.0	3	100	0	54	0	33	0	66	0.92
14817501--14817531	9	3.6	9	91	8	55	19	0	0	80	0.71
14817502--14817531	8	3.6	8	91	8	51	20	0	0	80	0.72
14817671--14817738	17	3.8	17	77	14	66	75	1	2	20	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14817662--14817746	20	4.0	20	75	14	62	74	1	3	21	1.04
14819139--14819173	10	3.5	10	88	0	52	57	0	0	42	0.99
14819116--14819171	20	2.5	22	83	11	62	46	0	1	51	1.11
14820320--14820351	2	16.0	2	93	0	55	46	0	3	50	1.17
14828987--14829099	45	2.4	46	79	8	113	31	12	7	48	1.68
14829034--14829136	49	2.2	45	84	6	125	24	12	8	54	1.66
14831452--14831876	223	1.9	223	79	9	474	38	8	6	46	1.60
14831868--14831905	12	3.2	12	81	7	51	21	0	2	76	0.91
14832628--14832652	7	3.6	7	100	0	50	12	0	0	88	0.53
14833088--14833137	26	1.9	26	84	8	66	36	0	0	64	0.94
14835653--14835681	6	4.8	6	100	0	58	65	0	0	34	0.93
14838890--14838948	27	2.2	27	78	6	66	81	8	5	5	0.98
14838998--14839029	10	3.3	10	95	4	57	6	46	9	37	1.61
14840036--14840065	11	2.7	11	94	0	51	26	3	16	53	1.59
14840487--14840533	17	2.8	17	78	9	53	63	4	0	31	1.13
14840765--14840798	15	2.3	15	90	5	52	58	0	5	35	1.22
14845052--14845108	19	3.0	19	80	14	64	78	1	17	1	0.91
14846717--14847029	99	3.2	98	77	4	303	25	16	17	39	1.91
14847049--14847194	42	3.5	41	76	14	156	25	15	19	40	1.90
14847064--14847183	39	2.9	42	77	10	131	25	15	19	39	1.91
14847167--14847493	99	3.3	99	81	2	361	24	11	20	43	1.85
14847168--14847461	100	2.9	99	83	2	295	25	12	20	42	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14847454--14847545	42	2.2	43	84	5	125	23	8	26	41	1.83
14848172--14848210	17	2.3	17	82	8	53	76	7	2	12	1.09
14848553--14848593	14	2.9	14	85	3	55	73	4	12	9	1.24
14849135--14849188	21	2.7	20	83	8	65	24	0	1	74	0.92
14849149--14849202	21	2.6	21	81	0	63	27	0	1	70	0.98
14849728--14849773	17	2.8	17	77	9	51	65	4	0	30	1.12
14853812--14853861	3	16.7	3	100	0	100	32	0	0	68	0.90
14867448--14867472	13	1.9	13	100	0	50	48	12	16	24	1.79
14867601--14867640	3	13.0	3	89	5	62	30	0	2	67	1.04
14870412--14870460	24	2.1	22	85	7	62	67	0	24	8	1.18
14883068--14883099	2	16.0	2	93	0	55	53	0	0	46	1.00
14904455--14904493	16	2.3	17	86	8	53	48	2	10	38	1.51
14906641--14906681	19	2.2	19	86	4	57	12	0	9	78	0.98
14907173--14907239	27	2.5	27	88	9	93	20	2	25	50	1.62
14907252--14907293	19	2.2	20	86	4	59	14	4	19	61	1.49
14907915--14907984	20	3.4	20	78	18	65	22	5	5	65	1.36
14907912--14907983	22	3.4	22	76	16	64	22	5	6	65	1.38
14908024--14908075	24	2.1	24	86	10	70	28	3	13	53	1.57
14908088--14908151	13	4.8	13	75	9	58	29	1	7	60	1.34
14909931--14909960	12	2.5	12	94	0	51	23	23	6	46	1.75
14913175--14913217	21	2.1	20	86	4	59	51	34	0	13	1.42
14913178--14913226	21	2.3	20	80	10	53	51	32	0	16	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14913223--14913294	30	2.4	29	83	4	81	43	23	6	26	1.79
14913632--14913670	3	13.0	3	88	0	60	30	2	33	33	1.72
14914709--14914733	3	8.3	3	100	0	50	68	0	0	32	0.90
14914969--14915032	22	2.9	22	88	0	92	54	23	1	20	1.53
14915044--14915094	18	2.7	19	78	6	59	47	33	0	19	1.50
14915498--14915531	17	2.0	17	88	0	50	32	5	8	52	1.56
14916082--14916118	3	12.3	3	100	0	74	32	0	0	67	0.91
14918041--14918072	17	1.9	17	93	6	57	18	0	0	81	0.70
14918099--14918124	12	2.2	12	100	0	52	30	0	7	61	1.24
14918471--14918515	20	2.2	20	88	7	65	11	6	4	77	1.09

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105