genome.fa.s135.2.7.7.80.10.50.1000.58.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  58  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10850932--10851081	80	1.9	80	85	1	192	40	10	16	34	1.81
10850932--10851110	80	2.2	80	78	5	184	39	9	16	34	1.81
10851482--10851735	41	6.2	40	81	5	253	25	12	18	43	1.85
10851503--10851735	123	1.9	122	81	6	283	25	13	18	42	1.87
10851482--10851735	82	3.1	82	79	4	282	25	12	18	43	1.85
10851782--10851852	1	71.0	1	74	0	61	87	7	0	5	0.67
10851789--10851844	8	6.9	8	95	2	76	87	7	0	5	0.67
10851789--10851853	16	4.0	16	90	6	87	86	6	0	7	0.72
10851798--10851853	8	7.0	8	91	6	78	87	3	0	8	0.65
10851781--10851853	24	3.0	24	82	7	78	84	6	0	8	0.76
10853344--10853457	57	2.0	58	87	5	169	57	7	12	22	1.61
10854595--10854638	19	2.2	20	88	4	63	31	2	2	63	1.19
10854707--10854748	7	6.0	7	97	0	75	54	0	0	45	0.99
10854871--10854904	16	2.1	17	94	5	61	35	26	8	29	1.87
10855152--10855188	19	1.9	19	88	0	56	10	8	0	81	0.89
10855617--10855653	16	2.2	17	90	4	58	67	10	0	21	1.21
10858464--10858501	14	2.7	14	84	12	51	81	0	5	13	0.85
10858464--10858501	13	2.7	14	88	8	51	81	0	5	13	0.85
10863700--10863757	28	2.1	28	86	0	80	22	8	6	62	1.48
10863890--10863955	2	33.5	2	79	8	55	40	4	6	48	1.48
10863882--10863932	12	4.2	12	84	0	66	45	7	0	47	1.32
10863890--10863932	14	3.2	14	93	6	72	46	6	0	46	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10866635--10866791	52	3.0	52	88	1	199	24	25	9	40	1.85
10866816--10866847	11	2.9	11	90	0	55	46	28	0	25	1.53
10867084--10867178	25	3.8	25	77	13	88	18	31	10	38	1.85
10867143--10867214	25	2.9	24	72	13	74	20	33	8	37	1.83
10867735--10867891	52	3.0	52	83	1	199	26	26	8	39	1.84
10867916--10867947	11	2.9	11	90	0	55	46	28	0	25	1.53
10868752--10868908	52	3.0	52	82	9	153	26	22	8	41	1.83
10868933--10868964	11	2.9	11	90	0	55	46	28	0	25	1.53
10869201--10869331	25	5.2	25	71	12	99	19	34	8	37	1.82
10869219--10869331	50	2.3	50	84	3	138	20	34	7	37	1.82
10869853--10870008	52	3.0	52	84	0	197	25	23	8	41	1.83
10870290--10870419	25	5.2	24	69	12	75	20	33	7	38	1.81
10870292--10870419	50	2.6	50	82	3	143	20	33	7	39	1.79
10870948--10871093	52	2.8	52	85	4	179	24	22	10	42	1.84
10871118--10871149	11	2.9	11	90	0	55	46	28	0	25	1.53
10873556--10873757	64	3.2	64	70	9	189	35	11	16	36	1.85
10873489--10873757	126	2.1	126	83	5	330	36	12	17	33	1.87
10874133--10874232	35	2.9	34	77	8	103	37	9	17	37	1.81
10874907--10874957	20	2.5	21	81	6	70	60	3	7	27	1.42
10877291--10877372	38	2.2	38	86	2	121	47	23	10	18	1.80
10878480--10878895	186	2.3	176	80	11	493	41	12	12	32	1.82
10878753--10878786	13	2.8	12	86	8	50	44	23	2	29	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10878545--10878924	186	2.0	186	90	2	602	42	13	11	32	1.81
10887435--10887510	29	2.6	29	89	0	107	40	17	15	26	1.89
10887544--10887668	66	1.9	66	81	3	153	34	15	16	33	1.90
10887647--10887765	41	3.0	40	81	2	139	39	11	15	32	1.84
10893203--10893274	30	2.4	29	84	6	90	33	27	9	29	1.89
10894925--10894958	14	2.5	13	90	4	50	88	2	5	2	0.70
10895782--10895846	17	3.3	20	80	15	66	78	3	13	4	1.03
10895800--10895846	19	2.6	17	81	12	58	80	2	14	2	0.89
10895806--10895865	19	3.1	18	83	9	57	78	1	16	3	0.97
10896304--10896351	19	2.5	19	73	13	53	72	12	6	8	1.26
10896358--10896427	24	2.7	26	71	13	63	74	4	18	2	1.11
10897402--10897459	22	2.6	22	75	0	53	31	17	22	29	1.96
10898017--10898181	40	4.0	40	82	10	190	33	18	12	35	1.88
10898140--10898204	26	2.4	27	87	5	87	40	15	10	33	1.82
10898406--10898444	18	2.2	18	90	0	60	28	17	10	43	1.82
10898576--10898611	9	4.0	9	85	0	54	86	0	11	2	0.68
10898996--10899145	69	2.2	70	84	3	196	34	10	16	39	1.82
10899178--10899247	33	2.1	33	89	0	104	32	14	21	31	1.93
10899207--10899494	88	3.3	87	88	1	432	31	15	16	36	1.90
10905859--10905989	51	2.5	53	80	4	160	38	7	15	38	1.76
10906257--10906290	18	1.9	17	88	5	50	32	0	0	67	0.91
10907029--10907159	5	24.6	5	75	20	58	20	3	3	72	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10907039--10907095	14	3.9	15	82	10	57	21	0	3	75	0.95
10907091--10907123	7	4.7	7	100	0	66	27	12	0	60	1.32
10907032--10907146	16	6.7	17	70	18	51	22	4	1	71	1.13
10908101--10908138	15	2.5	15	91	0	67	10	18	2	68	1.30
10910076--10910108	10	3.3	10	100	0	66	90	0	9	0	0.44
10911166--10911478	55	5.7	56	74	12	215	22	20	14	42	1.88
10911211--10911478	110	2.4	110	78	7	253	23	20	13	42	1.87
10911505--10911653	56	2.7	56	84	1	192	19	19	17	43	1.88
10911780--10911813	17	2.0	17	88	0	50	41	23	8	26	1.83
10911740--10911913	69	2.5	69	79	4	172	35	18	15	29	1.92
10912368--10912503	51	2.7	50	81	6	166	38	8	15	36	1.79
10913082--10913186	12	8.7	11	67	26	54	22	1	3	71	1.12
10913081--10913121	19	2.2	18	86	4	55	14	2	4	78	1.03
10913157--10913214	19	3.2	19	80	9	68	32	0	1	65	1.03
10915762--10915838	38	2.0	38	94	0	136	31	32	9	27	1.88
10919423--10919465	20	2.1	20	87	12	61	32	18	0	48	1.48
10923856--10925487	181	9.1	180	79	5	1413	40	7	9	41	1.66
10923875--10926346	542	4.6	541	76	8	2048	40	7	9	41	1.66
10923894--10926346	181	13.7	176	74	8	1401	40	7	9	41	1.66
10926199--10926489	142	2.0	143	82	4	347	39	7	9	43	1.65
10926807--10929248	362	6.8	357	73	10	1030	41	7	9	41	1.66
10926971--10928884	181	10.6	182	73	10	541	41	8	9	41	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10926718--10929359	180	14.7	181	76	6	1981	41	7	9	41	1.66
10926718--10930681	545	7.4	535	75	10	2210	40	7	9	41	1.68
10926988--10929301	181	12.9	175	73	10	414	41	7	9	41	1.66
10929373--10930704	361	3.7	361	76	7	1109	38	8	10	42	1.70
10929375--10930706	181	7.4	178	76	9	1042	37	8	10	42	1.70
10930192--10931705	511	2.9	513	77	9	1144	39	7	10	41	1.69
10930707--10931874	180	6.5	181	79	5	1113	41	8	9	40	1.68
10931742--10932006	144	1.8	145	79	8	306	42	8	7	41	1.63
10932241--10932569	179	1.8	180	82	3	421	41	8	7	41	1.65
10932241--10940856	181	47.8	178	70	11	3015	40	8	9	41	1.67
10932241--10940775	356	23.7	359	70	11	3244	40	8	9	41	1.67
10932241--10940856	717	11.9	714	70	12	2877	40	8	9	41	1.67
10934541--10934801	87	3.0	87	94	1	443	40	6	5	47	1.53
10935228--10935263	16	2.1	17	90	10	56	44	2	11	41	1.54
10936324--10936568	128	1.9	128	85	5	334	45	6	10	37	1.64
10936760--10940856	537	7.6	533	76	8	2694	39	8	10	41	1.68
10936760--10940854	718	5.7	709	76	8	2585	39	7	10	41	1.68
10942044--10942352	167	1.8	168	82	2	397	44	9	5	41	1.60
10942402--10942726	177	1.8	180	82	4	424	42	12	8	37	1.72
10942342--10946771	718	6.2	719	74	11	1805	41	10	7	40	1.67
10940853--10946711	181	33.0	174	71	12	2119	41	10	7	40	1.67
10944101--10944376	141	1.9	143	84	2	369	44	9	6	40	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10943917--10944529	322	1.9	315	80	6	707	43	9	6	40	1.63
10943747--10944743	503	2.0	495	80	5	1096	42	9	7	41	1.64
10944260--10946822	899	2.9	887	76	7	2347	41	10	8	40	1.68
10948597--10952491	181	21.9	180	73	8	2195	40	9	8	41	1.68
10948597--10960199	362	32.4	359	68	13	2541	40	9	8	40	1.69
10948597--10955090	541	12.2	537	71	11	1807	40	9	8	40	1.68
10950360--10950687	183	1.8	181	83	4	435	42	12	6	38	1.67
10951375--10951696	179	1.8	177	80	4	396	43	9	9	37	1.70
10951994--10952494	169	2.9	169	77	7	447	41	7	7	42	1.63
10952365--10952661	146	2.0	147	84	3	393	44	9	6	39	1.63

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105