genome.fa.s135.2.7.7.80.10.50.1000.27.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  27  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5444939--5445063	59	2.2	57	85	9	166	36	7	4	51	1.51
5444754--5445017	92	2.9	90	84	5	325	35	6	7	50	1.57
5448968--5449025	26	2.2	26	84	6	73	27	3	8	60	1.42
5449102--5449161	10	6.3	9	77	9	57	55	0	3	41	1.16
5449104--5449161	19	3.0	20	80	5	66	53	0	3	43	1.17
5449103--5449158	29	1.9	29	82	7	69	53	0	3	42	1.18
5449186--5449227	18	2.3	18	80	12	50	38	0	7	54	1.28
5460829--5460981	78	2.0	78	88	2	227	49	6	3	39	1.47
5465826--5465881	29	1.9	29	85	7	78	50	3	5	41	1.43
5470032--5470111	32	2.5	32	83	2	108	42	13	15	28	1.85
5471193--5471254	21	3.0	21	69	9	63	33	4	4	56	1.42
5471689--5471748	21	3.0	20	71	9	50	36	3	5	55	1.38
5471862--5471927	20	3.5	17	78	19	53	28	4	0	66	1.11
5471882--5471940	16	3.1	19	77	20	61	32	1	1	64	1.13
5471867--5471940	37	2.0	39	84	12	102	31	4	1	63	1.21
5471150--5473349	925	2.4	920	80	5	2302	31	9	6	53	1.58
5472570--5473230	210	3.1	217	78	11	557	29	9	6	53	1.59
5472841--5472874	16	2.1	17	88	5	52	29	11	5	52	1.61
5471628--5473781	925	2.3	937	79	6	2274	31	9	6	53	1.58
5473259--5473297	16	2.4	16	82	0	51	33	5	5	56	1.43
5472896--5473354	220	2.1	221	79	7	479	30	10	5	53	1.58
5473509--5473557	17	2.9	16	84	9	62	22	4	6	67	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5474926--5474974	21	2.3	21	92	0	80	59	0	0	40	0.98
5475055--5475109	21	2.6	22	83	11	71	43	0	0	56	0.99
5475138--5475181	21	2.1	21	91	0	70	40	2	2	54	1.25
5475137--5475218	25	3.3	25	81	10	105	40	1	2	56	1.20
5475192--5475224	16	2.0	17	88	5	50	45	0	3	51	1.16
5475249--5475286	7	5.3	7	82	17	51	84	0	2	13	0.73
5476501--5476540	20	2.1	19	85	4	53	17	5	2	75	1.10
5479143--5479185	21	2.0	21	86	9	59	48	6	2	41	1.43
5479695--5479728	16	2.0	18	88	11	54	44	5	0	50	1.26
5480911--5480962	21	2.5	21	90	0	86	44	3	17	34	1.67
5481078--5481123	18	2.5	19	85	3	58	10	0	45	43	1.39
5481094--5481138	19	2.4	19	85	7	56	8	4	46	40	1.55
5481176--5481237	18	3.5	17	78	6	61	14	0	37	48	1.44
5481279--5481403	19	6.6	19	75	10	121	16	4	36	43	1.67
5481262--5481403	57	2.5	57	77	11	148	18	3	34	43	1.67
5481295--5481422	38	3.4	38	82	5	143	16	2	39	42	1.61
5482326--5482371	11	4.3	11	78	13	51	58	4	13	23	1.52
5482333--5482380	22	2.3	22	85	7	64	56	6	16	20	1.62
5483726--5483827	52	2.0	51	84	1	132	44	11	13	30	1.80
5483724--5483876	51	3.0	52	79	6	145	43	12	15	29	1.83
5486923--5487077	41	3.8	41	80	0	121	41	11	18	29	1.85
5486971--5487276	42	7.4	42	74	11	182	39	13	16	30	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5486962--5487199	41	5.8	40	74	11	126	40	12	16	30	1.85
5487353--5487424	18	4.1	18	82	3	76	47	6	12	33	1.68
5487396--5487432	18	2.1	17	95	5	65	48	10	16	24	1.77
5487465--5487526	17	3.6	17	73	4	63	48	19	9	22	1.78
5487579--5487692	37	3.2	37	71	12	110	42	7	18	31	1.79
5487506--5487705	108	1.9	108	80	4	242	42	8	18	31	1.80
5489861--5489919	28	2.1	28	84	6	75	6	11	1	79	0.99
5490105--5490340	112	2.1	112	97	0	445	25	6	21	45	1.76
5492116--5492143	3	9.3	3	100	0	56	67	0	0	32	0.91
5492908--5492953	10	4.4	10	89	10	74	86	0	13	0	0.56
5492911--5492966	24	2.3	24	90	6	87	82	0	17	0	0.68
5492908--5492966	23	2.7	23	89	10	88	83	0	16	0	0.66
5492915--5492966	12	4.6	11	79	9	52	82	0	17	0	0.66
5496038--5496370	48	6.8	48	78	6	278	25	13	13	46	1.80
5496038--5496370	96	3.4	95	80	7	330	25	13	13	46	1.80
5498820--5498862	14	2.9	15	86	6	61	48	27	6	16	1.71
5498820--5498868	14	3.4	14	80	5	53	48	24	6	20	1.72
5498874--5498956	14	6.1	14	74	24	70	44	31	1	22	1.61
5498874--5498982	34	3.3	33	80	8	114	44	31	1	22	1.64
5498874--5498931	7	8.4	7	78	17	59	46	31	0	22	1.52
5499449--5499492	20	2.3	20	88	7	65	50	0	6	43	1.29
5503663--5503831	37	4.6	36	77	6	151	37	10	15	36	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5505886--5505927	19	2.2	19	91	0	66	9	2	42	45	1.49
5505871--5505965	49	1.9	49	85	8	131	14	3	41	41	1.62
5505969--5506047	7	11.7	7	78	8	74	20	0	36	43	1.52
5505968--5506025	20	2.9	20	72	7	55	17	0	36	46	1.48
5505970--5506024	13	4.2	13	74	4	56	18	0	38	43	1.50
5505971--5506045	27	2.7	27	83	2	87	20	0	37	42	1.52
5505974--5506057	20	4.2	20	79	10	84	20	0	35	44	1.52
5506081--5506145	19	3.5	18	74	14	69	12	6	43	38	1.67
5506105--5506170	19	3.5	19	71	8	53	15	4	40	39	1.67
5506084--5506192	38	2.9	37	83	6	121	16	4	40	38	1.69
5506283--5506345	29	2.2	29	97	2	119	58	9	9	22	1.58
5506205--5506324	61	2.0	62	90	5	190	53	6	15	25	1.65
5509347--5509377	3	10.3	3	92	0	53	32	3	0	64	1.09
5510198--5510277	9	8.6	9	75	17	65	18	3	2	75	1.07
5510177--5510215	21	1.9	20	85	15	53	17	5	0	76	0.96
5510227--5510288	18	3.2	19	81	11	63	17	4	3	74	1.13
5517686--5517728	21	2.0	21	100	0	86	37	0	16	46	1.47
5520920--5522768	696	2.7	693	89	3	2732	38	8	9	43	1.67
5525801--5525836	18	1.9	19	88	5	56	52	0	2	44	1.15
5526309--5526352	22	2.0	22	100	0	88	36	0	18	45	1.49
5532412--5532450	19	2.0	21	90	10	64	76	2	10	10	1.10
5536578--5537037	153	3.0	153	94	0	785	44	9	17	28	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5536815--5536884	31	2.3	31	87	0	95	34	14	18	32	1.91
5536957--5537199	31	7.8	31	77	2	202	37	14	16	31	1.90
5536989--5537199	62	3.4	62	82	1	244	36	15	17	30	1.90
5536989--5537252	93	2.8	94	78	4	212	35	14	17	32	1.90
5537202--5537268	33	2.0	34	88	2	100	31	11	20	35	1.89
5537761--5537808	22	2.2	22	82	10	55	29	8	20	41	1.81
5539190--5539688	248	2.0	248	98	0	971	30	7	34	26	1.85
5541049--5541085	19	1.9	19	89	10	58	59	0	0	40	0.97
5542432--5542475	18	2.8	15	78	21	54	43	4	2	50	1.35
5548257--5548297	19	2.1	20	90	4	66	39	21	4	34	1.75
5551728--5551752	12	2.1	12	100	0	50	36	40	8	16	1.77
5552910--5553014	51	2.1	51	82	10	126	36	16	14	33	1.89
5561999--5562058	29	2.1	29	80	0	66	43	3	10	43	1.54
5563350--5563395	22	2.0	22	83	4	56	47	2	15	34	1.57
5567657--5567702	24	2.0	23	86	4	65	10	4	6	78	1.08
5568437--5568486	26	1.9	26	84	8	66	12	10	2	76	1.11
5568437--5568506	26	2.6	25	78	13	61	11	10	2	75	1.14
5568919--5568959	12	3.4	12	82	0	55	0	14	0	85	0.60
5577559--5577678	64	1.9	64	96	0	222	32	21	5	40	1.75
5582250--5582296	22	2.1	21	85	14	60	40	0	2	57	1.11
5583306--5583340	18	1.9	18	88	11	54	71	14	11	2	1.25
5590804--5590828	1	25.0	1	100	0	50	0	100	0	0	0.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5597680--5597729	19	2.6	19	74	0	55	44	0	0	56	0.99
5597333--5597705	202	1.8	203	80	5	443	35	10	7	46	1.68
5597908--5597936	12	2.4	12	100	0	58	37	17	13	31	1.89
5598105--5598174	26	2.7	26	90	0	113	35	18	7	38	1.78
5598689--5598733	23	2.0	23	95	0	81	24	17	15	42	1.88
5598872--5598926	27	2.0	27	82	6	67	80	0	5	14	0.89
5598887--5598932	15	3.1	15	84	12	60	78	2	0	19	0.86
5599228--5599517	48	6.1	47	79	8	286	38	23	11	26	1.89
5599238--5599506	97	2.8	96	83	6	316	40	23	10	26	1.86
5599235--5599507	145	1.9	141	86	5	388	39	23	10	26	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105