genome.fa.s135.2.7.7.80.10.50.1000.80.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  80  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14018144--14018188	22	2.1	21	87	4	63	22	4	6	66	1.33
14020423--14020452	16	1.9	15	93	6	51	50	0	30	20	1.49
14023218--14023248	2	16.0	2	93	6	55	0	0	48	51	1.00
14028536--14028585	23	2.2	23	92	0	82	64	0	2	34	1.05
14028746--14028786	22	1.9	21	90	5	64	58	0	7	34	1.26
14030517--14030982	258	1.8	258	88	1	711	34	22	13	28	1.92
14031860--14031890	16	2.0	15	93	6	53	48	0	32	19	1.49
14039444--14039568	18	6.9	18	73	13	105	27	4	35	32	1.78
14039522--14039562	21	2.0	21	95	0	73	29	2	41	26	1.69
14039913--14039964	27	1.9	27	88	7	79	30	38	5	25	1.79
14043335--14043383	25	1.9	26	87	4	73	42	10	2	44	1.49
14043606--14043643	20	2.0	20	89	5	60	60	5	0	34	1.19
14043842--14043951	50	2.2	50	91	1	177	24	60	2	11	1.44
14049389--14049443	21	2.6	19	81	16	56	45	0	5	49	1.25
14055699--14055850	51	2.8	53	72	16	143	48	2	10	38	1.52
14055676--14055855	55	3.4	55	74	9	174	46	3	9	40	1.55
14059811--14059848	20	1.9	20	84	10	51	71	10	2	15	1.25
14059809--14059853	16	2.7	18	76	10	51	71	8	2	17	1.23
14061023--14061065	21	2.0	21	95	0	77	30	9	27	32	1.88
14064501--14064976	258	1.8	258	87	2	706	34	22	14	28	1.93
14065841--14065871	16	2.0	15	93	6	53	48	0	32	19	1.49
14069149--14069183	17	2.1	17	94	0	61	34	28	17	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14069147--14069307	81	2.0	81	90	0	250	26	33	16	22	1.96
14069288--14069334	23	2.0	23	95	0	85	21	29	21	27	1.98
14069334--14069366	17	1.9	17	93	0	57	39	30	15	15	1.88
14069207--14069415	104	2.0	104	92	0	346	26	33	17	22	1.96
14069311--14069626	81	3.9	81	94	0	533	27	33	17	21	1.95
14069147--14069496	185	1.9	185	92	0	583	27	33	17	22	1.96
14069496--14069530	17	2.1	17	94	0	61	34	28	17	20	1.95
14069577--14069611	17	2.1	17	100	0	70	34	31	17	17	1.93
14069802--14069855	25	2.2	25	96	0	99	38	18	9	33	1.83
14072262--14072292	15	2.1	15	100	0	62	61	6	6	25	1.45
14073361--14073398	12	3.2	12	92	3	60	23	10	15	50	1.75
14073365--14073399	12	2.9	12	95	0	61	25	14	14	45	1.82
14073532--14073565	15	2.3	15	100	0	68	8	0	23	67	1.18
14075303--14075328	2	13.0	2	100	0	52	50	0	0	50	1.00
14076268--14076314	11	4.3	11	88	0	76	44	25	0	29	1.54
14076921--14077148	116	2.0	116	91	0	366	33	22	6	37	1.80
14077310--14077352	22	2.0	22	95	0	77	51	20	0	27	1.48
14077470--14077494	11	2.3	11	100	0	50	16	20	8	56	1.65
14078244--14078286	22	2.0	22	90	0	68	53	11	0	34	1.37
14081559--14081603	8	5.6	8	89	0	72	42	0	0	57	0.98
14081566--14081621	16	3.7	16	81	11	64	46	0	0	53	1.00
14084481--14084540	24	2.5	24	97	0	111	36	16	16	30	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14085014--14085041	12	2.3	12	100	0	56	14	7	0	78	0.95
14085730--14085756	14	1.9	14	100	0	54	0	29	3	66	1.09
14092663--14092752	31	3.0	31	77	7	80	42	5	15	36	1.71
14092763--14092914	51	2.8	53	72	16	143	48	2	10	38	1.52
14092740--14092919	55	3.4	55	74	9	174	46	3	9	40	1.55
14096879--14096916	20	1.9	20	84	10	51	71	10	2	15	1.25
14096877--14096921	16	2.7	18	76	10	51	71	8	2	17	1.23
14098092--14098134	21	2.0	21	90	0	68	30	6	27	34	1.83
14103969--14104008	14	2.9	14	96	0	71	37	22	0	40	1.54
14113807--14113896	31	3.0	31	77	7	80	42	5	15	36	1.71
14113907--14114058	51	2.8	53	72	16	143	48	2	10	38	1.52
14113884--14114063	55	3.4	55	74	9	174	46	3	9	40	1.55
14119222--14119264	21	2.0	21	95	0	77	30	9	27	32	1.88
14122671--14123166	258	1.9	254	87	4	719	34	21	14	29	1.93
14130100--14130143	17	2.8	15	80	12	52	61	11	0	27	1.30
14130098--14130137	17	2.4	17	86	0	53	67	10	0	22	1.20
14130417--14130627	79	2.7	79	83	6	277	46	5	9	37	1.60
14130577--14130803	59	3.9	58	78	13	232	46	5	9	38	1.60
14130729--14130772	15	2.9	15	76	10	54	54	4	4	36	1.41
14133952--14133981	6	5.0	6	91	0	51	16	20	33	30	1.94
14141074--14141474	85	4.8	84	75	8	296	21	16	14	47	1.82
14141151--14141473	166	1.9	167	80	4	375	21	16	13	47	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14141157--14141409	81	3.1	82	71	10	203	21	16	13	48	1.81
14144132--14144168	15	2.5	15	90	0	56	37	21	27	13	1.91
14145144--14145199	15	3.7	15	78	4	58	46	3	3	46	1.37
14145214--14145280	27	2.7	24	82	13	89	29	0	1	68	0.98
14145224--14145281	26	2.2	26	90	3	89	32	0	1	65	1.03
14145210--14145276	20	3.5	19	74	9	57	29	0	1	68	0.98
14146300--14146363	31	2.1	31	91	2	103	25	20	15	39	1.92
14154556--14154617	30	2.1	29	85	8	81	46	8	0	45	1.32
14155965--14156028	35	1.9	32	81	9	74	54	1	0	43	1.09
14155984--14156027	22	2.1	22	87	8	65	56	2	0	40	1.11
14156920--14156987	27	2.6	26	76	4	75	44	0	1	54	1.09
14157225--14157377	62	2.5	61	78	9	159	37	4	16	41	1.69
14157632--14157673	18	2.2	20	87	8	61	50	2	14	33	1.56
14160465--14160802	163	2.1	164	81	6	384	35	16	13	34	1.88
14170261--14170354	31	3.0	31	84	6	127	42	5	15	36	1.70
14170342--14170521	55	3.4	54	73	12	174	43	3	12	40	1.59
14170636--14170660	4	6.2	4	100	0	50	24	0	24	52	1.48
14177260--14177299	20	2.0	20	85	9	55	60	5	15	20	1.53
14183867--14183905	20	2.0	19	85	5	51	58	0	2	38	1.12
14184368--14184408	5	7.8	5	84	10	55	26	0	0	73	0.84
14185685--14185752	34	2.0	34	94	0	118	7	19	23	50	1.72
14197668--14197698	16	1.9	16	93	0	53	67	19	12	0	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14198565--14198611	20	2.3	21	78	10	53	46	0	0	53	1.00
14198565--14198609	21	2.1	21	84	8	56	46	0	0	53	1.00
14198732--14198772	17	2.5	16	88	7	64	56	0	0	43	0.99
14198718--14198853	28	4.9	28	67	20	88	50	4	0	44	1.27
14207041--14207073	17	2.0	17	88	5	50	45	12	0	42	1.41
14214233--14214291	12	4.7	12	74	12	55	38	8	37	15	1.78
14214265--14214306	15	2.8	15	77	0	57	42	7	38	11	1.69
14215256--14215294	2	19.5	2	89	0	60	46	2	2	48	1.29
14229865--14230052	35	5.4	35	74	6	132	32	21	11	34	1.89
14232234--14232544	165	1.9	165	82	6	398	31	9	19	38	1.85
14247887--14247948	30	2.1	30	82	8	74	27	0	4	67	1.10
14249046--14249078	17	1.9	18	88	11	52	3	3	18	75	1.06
14249074--14249119	21	2.1	22	84	4	58	10	2	10	76	1.12
14249122--14249160	5	7.8	5	88	11	62	79	0	0	20	0.73
14249130--14249159	9	3.2	9	95	4	51	80	0	0	20	0.72
14249122--14249160	14	2.6	15	92	8	62	79	0	0	20	0.73
14249189--14249234	23	2.0	23	86	0	65	26	23	21	28	1.99
14249452--14250162	49	14.8	47	77	9	344	37	19	12	30	1.89
14249465--14250208	48	15.5	49	79	6	706	37	19	12	30	1.88
14249524--14250205	47	14.2	48	79	4	619	38	20	12	29	1.89
14249465--14250205	192	3.9	194	81	6	832	37	19	12	29	1.89
14249513--14250205	288	2.4	285	83	5	849	38	20	12	29	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14251013--14251059	8	6.0	8	85	9	62	12	2	2	82	0.84
14257071--14257101	9	3.4	9	100	0	62	35	9	22	32	1.87
14260887--14260918	15	2.1	15	94	0	55	0	0	21	78	0.76
14262631--14262683	21	2.5	22	81	9	56	69	1	0	28	0.99
14262631--14262683	22	2.5	21	84	3	61	69	1	0	28	0.99
14263667--14263722	28	2.0	28	89	0	85	25	23	25	26	2.00
14263797--14263843	14	3.3	14	80	13	60	6	2	10	80	0.96
14263797--14263843	7	6.6	7	79	13	51	6	2	10	80	0.96
14264667--14264701	6	5.8	6	96	0	61	17	62	17	2	1.44
14278243--14278272	15	2.0	15	93	0	51	16	10	33	40	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105