genome.fa.s135.2.7.7.80.10.50.1000.104.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  104  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19017173--19017238	34	1.9	35	84	3	89	46	3	4	45	1.38
19018941--19018988	23	2.1	22	85	11	62	56	2	6	35	1.36
19020432--19020482	25	2.0	25	100	0	102	43	3	15	37	1.66
19020669--19020716	11	4.5	11	90	10	73	54	0	0	45	0.99
19022718--19022766	17	2.8	17	84	3	53	46	0	6	46	1.27
19024868--19024894	11	2.5	11	100	0	54	0	14	11	74	1.08
19030152--19030195	2	22.0	2	100	0	88	50	0	50	0	1.00
19038309--19038339	7	4.6	7	96	4	55	0	0	12	87	0.55
19040418--19040459	22	1.9	22	85	9	59	52	0	0	47	1.00
19040411--19040509	17	5.6	17	65	17	51	48	1	0	50	1.07
19042987--19043046	24	2.7	21	85	12	68	46	6	0	46	1.29
19043001--19043046	24	1.9	24	95	0	83	45	4	0	50	1.21
19043009--19043059	24	2.2	23	82	6	59	50	3	0	45	1.20
19055788--19055817	14	2.1	14	93	0	51	30	26	13	30	1.94
19065218--19065272	18	3.3	18	63	31	50	40	12	36	10	1.79
19065210--19065276	31	2.2	31	100	0	134	43	13	34	8	1.75
19069110--19069153	22	2.0	22	95	0	79	27	25	4	43	1.74
19075075--19075113	16	2.4	16	86	0	51	41	25	2	30	1.69
19075083--19075114	16	2.0	16	93	0	55	43	21	0	34	1.53
19086773--19086803	11	2.9	11	95	4	55	29	0	19	51	1.47
19092621--19092662	7	6.0	7	80	8	50	40	0	0	59	0.97
19094746--19094784	2	19.5	2	100	0	78	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19095225--19095263	20	2.0	20	89	0	60	53	5	2	38	1.37
19097003--19097040	20	1.9	20	89	10	60	2	18	13	65	1.37
19098686--19098712	12	2.2	12	100	0	54	33	0	33	33	1.58
19103084--19103118	17	1.9	18	88	11	54	77	2	2	17	1.02
19105141--19105187	21	2.2	21	78	17	53	27	17	10	44	1.81
19107968--19108055	9	9.9	9	77	13	85	79	1	11	7	0.98
19107968--19108071	16	6.0	17	75	12	88	77	0	13	7	1.02
19109319--19109358	21	1.9	21	100	0	80	40	5	20	35	1.74
19109381--19109430	20	2.4	21	86	3	66	40	12	16	32	1.84
19109318--19109527	79	2.7	79	90	1	323	38	11	18	32	1.86
19109318--19109554	79	3.0	78	85	6	307	37	10	18	33	1.86
19109935--19110347	41	10.0	41	80	3	405	23	11	20	44	1.84
19109939--19110347	126	3.3	126	81	3	443	23	11	20	44	1.84
19109935--19110315	84	4.6	83	84	3	408	23	10	19	45	1.82
19111142--19111180	15	2.7	15	84	4	53	87	2	2	7	0.73
19117331--19117359	12	2.3	13	94	5	51	89	3	6	0	0.57
19117394--19117428	18	1.9	18	94	0	61	65	8	0	25	1.21
19118269--19118316	17	2.8	17	79	14	55	77	4	8	10	1.12
19118252--19118319	18	3.8	17	73	17	57	77	2	7	11	1.07
19118585--19118634	26	2.0	25	88	7	75	80	2	12	6	0.98
19118690--19118736	22	2.1	23	84	4	60	65	0	0	34	0.93
19119372--19119415	9	5.3	9	91	8	60	70	0	0	29	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19119372--19119420	14	3.1	16	82	14	57	71	0	0	28	0.86
19119364--19119420	7	7.6	7	84	7	51	71	0	0	28	0.86
19121633--19121734	44	2.3	44	94	0	186	32	16	19	31	1.94
19126908--19126937	2	15.0	2	92	0	51	46	3	0	50	1.18
19128771--19128875	52	2.0	52	90	0	165	45	4	7	41	1.53
19133784--19133811	6	4.7	6	100	0	56	35	50	14	0	1.43
19141502--19141580	24	3.3	24	75	16	83	60	0	2	36	1.10
19141499--19141612	47	2.4	45	81	14	133	60	0	4	35	1.17
19141511--19141575	21	2.8	22	80	15	78	60	0	3	36	1.13
19143960--19144009	20	2.5	20	80	6	57	2	28	0	70	0.99
19144139--19144199	30	2.0	31	90	3	97	50	24	9	14	1.73
19144709--19144904	40	4.9	38	80	7	151	43	18	12	25	1.85
19144820--19145071	41	6.1	41	81	7	260	43	19	10	26	1.84
19144708--19145089	41	9.4	41	78	8	230	45	18	10	25	1.82
19144778--19145089	82	3.8	83	78	6	280	44	18	10	25	1.82
19144795--19145089	123	2.4	122	80	6	317	46	17	9	26	1.79
19145428--19145466	20	2.0	20	84	0	51	33	15	12	38	1.85
19145296--19145496	110	1.8	111	82	5	264	33	19	12	33	1.90
19145516--19145811	46	6.4	46	89	3	407	37	14	10	37	1.80
19145545--19145756	21	9.3	21	72	17	149	37	14	11	37	1.82
19151543--19151596	12	4.3	13	81	11	60	74	5	1	18	1.11
19151543--19151596	25	2.2	25	87	12	76	74	5	1	18	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19155417--19155460	15	2.9	15	75	3	52	63	9	0	27	1.24
19155446--19155500	28	2.0	27	82	3	65	58	3	1	36	1.26
19155508--19155568	27	2.3	26	91	5	95	49	0	1	49	1.10
19156718--19156756	21	1.9	20	84	5	51	53	10	2	33	1.48
19171336--19171369	1	34.0	1	87	0	50	94	2	2	0	0.38
19172910--19172955	23	2.0	23	83	8	58	50	2	2	45	1.26
19172908--19173032	58	2.2	58	86	4	173	52	1	1	44	1.20
19180216--19180252	18	2.1	18	89	0	56	51	0	0	48	1.00
19180372--19180446	29	2.6	29	72	17	68	65	4	0	30	1.11
19180378--19180417	21	1.9	21	84	0	53	65	5	0	30	1.14
19180399--19180453	18	3.1	17	78	5	56	67	1	0	30	1.01
19190165--19190200	3	11.7	3	88	5	54	2	0	27	69	1.02
19195372--19195416	20	2.2	20	100	0	90	15	28	6	48	1.70
19198081--19198161	28	2.9	27	81	3	99	35	19	7	37	1.80
19198081--19198161	27	2.9	28	83	3	110	35	19	7	37	1.80
19208146--19208172	2	13.5	2	100	0	54	48	0	0	51	1.00
19211412--19211454	22	2.0	22	95	0	77	30	0	20	48	1.50
19211482--19211622	51	2.7	50	81	5	158	53	4	12	29	1.59
19212040--19212081	12	3.6	12	78	18	52	33	0	0	66	0.92
19213776--19213810	3	11.7	3	87	0	52	65	0	2	31	1.07
19227599--19227663	16	4.1	16	73	15	62	52	18	23	6	1.67
19232724--19233131	168	2.4	167	80	4	426	36	15	12	35	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19240837--19240985	52	2.9	52	78	15	164	29	18	6	44	1.75
19241009--19241055	11	4.3	11	88	0	58	55	21	0	23	1.44
19241013--19241055	22	2.0	22	95	0	77	53	23	0	23	1.46
19241887--19242042	52	3.0	52	83	3	172	34	19	5	41	1.73
19254882--19254946	25	2.5	26	78	16	73	0	32	1	66	1.01
19258006--19258082	38	2.0	38	97	0	145	62	14	15	7	1.53
19259317--19259355	20	1.9	20	84	5	51	64	10	10	15	1.50
19272186--19272238	15	3.5	15	94	0	88	45	0	5	49	1.26
19272349--19272373	2	12.5	2	100	0	50	48	0	0	52	1.00
19280773--19280835	31	2.0	31	96	0	117	39	22	11	26	1.87
19286671--19286736	12	5.8	12	70	22	52	53	1	1	43	1.19
19288062--19288109	25	1.9	25	87	8	71	29	4	2	64	1.23
19303112--19303142	8	3.9	8	100	0	62	12	12	9	64	1.50
19313208--19313284	35	2.2	36	86	6	113	49	9	23	18	1.75
19313437--19313501	29	2.3	29	97	2	123	32	6	16	44	1.73
19322341--19322373	2	16.5	2	93	0	57	48	0	3	48	1.17
19326623--19326672	18	2.8	18	79	8	57	42	2	0	56	1.11
19326637--19326697	25	2.4	26	84	13	83	40	1	0	57	1.08
19326637--19326700	26	2.5	26	82	12	78	42	1	0	56	1.09
19326686--19326728	12	3.4	12	83	6	50	60	0	2	37	1.10
19326702--19326743	22	2.0	21	86	9	59	59	2	4	33	1.31
19339889--19339941	21	2.6	21	72	21	58	60	0	1	37	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19340111--19340185	35	2.1	36	85	7	100	57	1	6	34	1.33
19340159--19340204	15	2.9	16	81	12	51	80	0	0	19	0.71
19348691--19348717	2	13.5	2	100	0	54	48	0	0	51	1.00
19351664--19351694	2	15.5	2	100	0	62	0	48	0	51	1.00
19353945--19354006	30	2.1	30	96	0	115	20	17	12	48	1.80
19368024--19368071	22	2.2	22	88	0	69	47	6	6	39	1.54
19372143--19372170	2	14.0	2	100	0	56	50	0	0	50	1.00
19374745--19374795	21	2.4	21	100	0	102	21	33	19	25	1.97
19378331--19378562	112	2.1	112	90	0	367	37	21	16	25	1.94
19379478--19379518	19	2.1	20	86	4	57	17	0	60	21	1.35

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105