genome.fa.s135.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  7  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1044321--1044362	15	2.9	15	96	3	77	52	0	47	0	1.00
1044635--1044711	38	2.0	38	84	0	100	36	5	6	51	1.50
1052166--1052306	60	2.3	62	80	4	162	43	11	14	30	1.80
1053267--1053297	14	2.3	14	94	5	55	51	0	0	48	1.00
1053337--1053421	34	2.5	34	84	3	100	30	10	12	45	1.76
1053849--1053919	23	3.0	24	76	19	94	33	2	16	46	1.62
1059977--1060568	217	2.7	219	84	4	755	31	15	21	30	1.95
1060939--1061012	27	2.9	27	69	19	68	52	1	0	45	1.09
1062744--1062768	1	25.0	1	100	0	50	100	0	0	0	0.00
1062918--1062990	9	7.7	10	73	21	59	57	0	0	42	0.98
1067800--1067840	20	2.0	21	85	4	57	39	0	12	48	1.41
1077581--1077633	26	2.0	26	88	0	79	41	9	32	16	1.81
1078891--1078936	21	2.5	18	83	16	51	58	2	6	32	1.36
1079037--1079118	21	3.9	21	79	4	76	53	4	6	35	1.47
1079090--1079188	33	3.0	33	78	15	98	53	2	3	41	1.28
1079313--1079362	22	2.3	22	86	6	66	34	6	10	50	1.60
1079654--1079837	101	1.8	101	86	2	271	26	14	17	41	1.88
1081139--1081186	21	2.3	21	100	0	96	39	6	8	45	1.59
1087781--1090123	703	3.4	694	83	6	2785	34	14	11	39	1.83
1090997--1091236	80	3.0	80	87	3	306	24	8	23	43	1.82
1094488--1094556	35	2.0	35	85	0	93	37	23	11	27	1.89
1096102--1096165	22	3.0	20	76	15	56	37	12	7	42	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1096161--1096209	21	2.3	21	85	0	71	34	4	12	48	1.59
1096231--1096303	22	3.3	21	79	7	83	36	10	2	49	1.53
1096338--1096414	11	7.0	11	70	5	66	41	3	2	51	1.34
1096338--1096448	22	5.0	21	80	6	105	36	5	4	54	1.44
1096555--1096602	11	4.4	11	78	0	51	35	4	4	56	1.38
1096523--1096617	22	4.3	22	72	9	70	37	7	6	48	1.57
1098849--1098891	16	2.5	17	85	7	52	46	2	0	51	1.13
1098857--1098891	16	2.3	16	90	9	56	45	0	0	54	0.99
1110991--1111015	12	2.1	12	100	0	50	44	24	0	32	1.54
1115342--1115415	32	2.4	31	83	2	85	41	1	2	54	1.23
1115454--1115511	24	2.4	26	83	13	79	41	0	0	58	0.98
1115573--1115619	2	23.5	2	100	0	94	51	0	48	0	1.00
1120794--1120843	23	2.2	23	100	0	100	18	20	4	58	1.55
1122345--1122423	31	2.5	32	80	11	83	48	2	0	49	1.14
1132239--1132266	5	5.6	5	100	0	56	17	0	0	82	0.68
1133892--1133922	11	2.8	11	100	0	62	19	16	19	45	1.86
1135124--1135161	15	2.7	14	84	11	51	50	2	0	47	1.15
1140968--1141000	2	16.5	2	100	0	66	51	0	0	48	1.00
1145958--1145995	19	2.0	20	85	10	53	60	0	0	39	0.97
1145978--1146044	31	2.1	31	83	5	80	46	2	2	47	1.33
1146079--1146113	7	5.3	7	86	13	56	68	0	0	31	0.90
1146074--1146111	6	6.2	6	82	17	51	68	0	0	31	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1146075--1146113	13	3.1	13	96	3	71	69	0	0	30	0.89
1146342--1146373	2	16.0	2	100	0	64	50	0	0	50	1.00
1155195--1155221	2	13.5	2	100	0	54	48	0	0	51	1.00
1155298--1155323	4	6.5	4	100	0	52	26	23	0	50	1.50
1163124--1163151	4	7.0	4	100	0	56	50	25	0	25	1.50
1167271--1167330	28	2.1	29	90	6	95	53	10	20	16	1.71
1169720--1169758	21	1.9	20	84	5	51	56	0	0	43	0.99
1170757--1171258	254	2.0	252	95	0	905	31	14	23	31	1.94
1172642--1172676	18	1.9	18	88	11	54	34	0	0	65	0.93
1176723--1177003	87	3.2	87	95	0	499	33	23	6	37	1.79
1177521--1177838	160	2.0	161	86	1	451	26	17	22	33	1.96
1178701--1178754	19	2.9	18	76	13	56	12	3	11	72	1.25
1183936--1183968	16	2.1	16	100	0	66	45	0	18	36	1.49
1185642--1185695	28	2.0	27	88	3	81	35	3	14	46	1.63
1191580--1191625	23	2.0	24	86	4	67	50	0	0	50	1.00
1191613--1191685	9	8.4	9	74	19	75	53	0	0	46	1.00
1191616--1191685	25	2.8	26	91	4	108	52	0	0	47	1.00
1191614--1191685	26	2.8	25	87	8	110	52	0	0	47	1.00
1191685--1191748	19	3.5	19	81	8	62	54	0	1	43	1.09
1191622--1191772	16	9.4	16	65	26	61	52	1	0	45	1.14
1191650--1191770	36	3.6	35	75	14	87	52	1	0	45	1.16
1191800--1191880	31	2.5	33	88	5	114	40	1	2	55	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1191994--1192041	22	2.2	22	85	3	62	33	2	4	60	1.27
1192058--1192085	14	2.0	14	100	0	56	42	7	0	50	1.30
1192375--1192448	32	2.4	31	80	8	87	47	0	0	52	1.00
1204134--1204159	6	4.3	6	100	0	52	65	0	0	34	0.93
1204556--1204590	8	4.1	8	92	7	52	68	2	0	28	1.04
1205056--1205142	43	2.0	43	97	0	165	33	6	21	37	1.80
1208842--1208870	2	14.5	2	100	0	58	51	0	0	48	1.00
1209874--1209913	18	2.2	18	86	0	53	30	30	35	5	1.79
1212265--1212332	32	2.2	32	94	2	120	23	17	5	52	1.66
1218328--1218431	19	5.8	17	67	16	59	64	0	1	32	1.11
1218380--1218425	10	4.7	10	78	10	51	63	2	0	34	1.07
1218323--1218430	18	6.1	17	70	12	67	62	0	1	35	1.13
1218380--1218431	19	2.7	18	82	11	68	67	1	0	30	1.02
1218347--1218449	26	3.7	30	76	14	82	63	0	3	32	1.19
1218500--1218596	37	2.6	37	79	8	90	54	4	5	36	1.42
1218584--1218716	56	2.3	57	77	14	132	67	5	0	26	1.16
1218622--1218690	24	3.0	24	74	17	74	69	4	0	26	1.07
1218860--1218931	37	1.9	37	83	5	92	23	1	8	66	1.27
1218988--1219061	30	2.5	30	78	12	89	37	4	2	55	1.33
1224238--1224279	19	2.1	21	91	8	70	50	0	0	50	1.00
1224270--1224303	17	2.0	17	88	11	52	67	0	0	32	0.91
1224772--1224839	11	5.6	11	74	19	55	27	1	0	70	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1224782--1224837	21	2.7	20	78	10	60	25	1	0	73	0.93
1224773--1224838	13	5.1	13	81	7	71	25	1	0	72	0.93
1224773--1224837	26	2.5	26	87	0	85	26	1	0	72	0.94
1229288--1229367	37	2.2	35	82	6	97	55	1	2	41	1.21
1230873--1230912	18	2.2	18	86	0	53	30	30	35	5	1.79
1232282--1232310	5	5.8	5	100	0	58	17	0	0	82	0.66
1233491--1233531	21	2.0	21	100	0	82	75	0	0	24	0.80
1233494--1233532	7	5.6	7	82	11	53	74	0	0	25	0.82
1245164--1245424	130	2.0	130	97	0	495	27	14	13	43	1.83
1245892--1246382	51	9.6	50	73	13	327	30	11	17	40	1.86
1246029--1246395	100	3.6	101	82	4	423	29	11	17	41	1.85
1246376--1246415	20	2.0	20	100	0	80	25	15	25	35	1.94
1246278--1246512	117	2.0	119	83	6	298	29	11	20	37	1.88
1246396--1246612	48	4.4	50	85	4	280	30	11	19	38	1.87
1246254--1246562	167	1.8	168	86	7	457	29	11	20	38	1.88
1246147--1246643	268	1.8	275	83	5	661	30	11	18	39	1.86
1248144--1248178	14	2.6	14	86	4	54	74	0	2	22	0.95
1248383--1248418	18	2.0	18	94	0	63	69	2	0	27	1.02
1249998--1250037	16	2.6	15	84	7	53	12	7	40	40	1.71
1256920--1256985	18	3.7	18	80	10	73	62	0	3	34	1.11
1256911--1256993	35	2.4	35	77	4	87	59	0	3	37	1.15
1257081--1257126	16	2.7	17	78	18	51	69	13	0	17	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1257113--1257193	37	2.2	38	86	4	112	48	3	4	43	1.42
1257189--1257252	30	2.1	30	86	11	87	65	7	0	26	1.19
1257182--1257252	10	7.2	10	76	7	65	63	7	0	29	1.21
1257551--1257618	21	3.2	20	68	13	55	38	1	0	60	1.06
1262678--1262744	18	3.9	16	77	14	62	49	1	2	46	1.26
1262961--1263021	20	2.9	20	82	7	59	50	0	3	45	1.17
1262976--1263024	19	2.6	18	87	12	71	53	0	0	46	1.00
1262977--1263021	20	2.2	21	92	7	76	53	0	0	46	1.00
1272563--1272593	2	15.5	2	100	0	62	0	51	0	48	1.00
1274175--1274216	22	1.9	22	85	0	57	50	2	2	45	1.27

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105