genome.fa.s135.2.7.7.80.10.50.1000.39.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  39  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7421012--7421100	43	2.1	42	81	10	101	37	12	6	43	1.69
7421012--7421100	44	2.1	42	83	8	108	37	12	6	43	1.69
7421119--7421353	60	3.9	58	77	13	208	37	13	5	43	1.67
7421366--7421400	17	2.1	17	89	10	54	82	0	0	17	0.66
7423938--7423969	16	2.0	16	93	0	55	43	21	0	34	1.53
7425638--7425701	3	21.0	3	80	15	69	28	1	1	68	1.07
7425770--7426071	57	5.4	56	79	10	289	45	6	11	36	1.66
7431698--7431928	121	1.9	121	84	1	311	43	10	12	33	1.77
7437093--7437145	20	2.6	20	81	3	61	43	1	3	50	1.30
7438931--7438962	2	16.0	2	100	0	64	50	0	0	50	1.00
7442224--7442255	16	2.0	16	93	0	55	43	21	0	34	1.53
7442926--7443253	183	1.8	180	85	2	467	36	15	9	37	1.81
7460225--7460445	122	1.8	122	90	2	354	41	9	13	35	1.77
7464739--7464772	2	17.0	2	93	0	59	47	0	2	50	1.16
7467050--7467087	16	2.3	16	86	13	51	42	0	5	52	1.24
7471019--7471050	16	2.0	16	93	0	55	43	21	0	34	1.53
7471764--7472112	176	2.0	176	84	2	459	34	15	9	39	1.81
7473068--7473156	30	3.0	30	94	0	151	25	29	5	39	1.79
7478104--7478218	38	3.0	38	94	2	196	29	7	29	33	1.86
7484543--7484783	122	2.0	122	91	1	394	41	8	15	34	1.78
7489312--7489366	19	2.8	20	77	5	58	76	9	1	12	1.10
7489771--7489821	13	4.4	11	79	18	50	76	0	17	5	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7490236--7490710	89	5.3	89	76	2	380	44	15	21	17	1.86
7501736--7501765	15	1.9	16	93	6	53	0	13	0	86	0.57
7502149--7502190	19	2.2	19	86	0	57	33	21	19	26	1.97
7502762--7502810	5	9.6	5	82	8	55	59	0	4	36	1.17
7502814--7502838	13	1.9	13	100	0	50	80	4	8	8	1.03
7508032--7508438	206	2.0	206	98	0	778	33	8	9	48	1.66
7510337--7510774	49	9.6	43	79	9	254	40	20	12	26	1.88
7510337--7510581	44	5.6	44	79	4	255	40	18	13	26	1.88
7510373--7510627	87	2.9	86	84	5	323	41	20	11	26	1.86
7510547--7510888	49	7.0	49	87	2	474	39	21	11	27	1.87
7510547--7510887	99	3.5	96	87	3	475	39	21	11	27	1.87
7511177--7511514	99	3.4	99	82	2	365	39	20	15	24	1.91
7511450--7511558	42	2.6	42	82	2	121	43	18	12	25	1.86
7512260--7512346	35	2.6	34	83	7	106	40	12	11	35	1.79
7518509--7518549	14	2.9	14	81	0	55	31	2	0	65	1.05
7521300--7521700	180	2.2	180	86	1	534	35	14	10	38	1.82
7526571--7526810	122	2.0	122	87	1	347	42	7	12	36	1.73
7528671--7528703	16	2.1	15	94	5	57	0	21	0	78	0.75
7531274--7531413	21	6.6	21	73	11	115	35	6	10	47	1.64
7531373--7531436	32	2.0	33	90	3	103	32	4	10	51	1.58
7531785--7531820	16	2.2	17	90	5	56	30	0	8	61	1.26
7531747--7531847	47	2.1	48	81	5	116	35	1	9	52	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7531773--7531828	11	5.9	10	71	25	50	35	0	8	55	1.31
7531776--7531828	27	2.0	26	85	10	72	33	0	9	56	1.32
7531822--7531921	21	4.8	21	78	12	98	35	10	10	45	1.71
7531821--7531918	42	2.3	42	82	0	115	36	10	10	42	1.73
7531906--7531947	22	1.9	22	95	0	75	28	7	11	52	1.64
7531221--7533620	534	4.5	533	86	3	3140	35	8	9	46	1.66
7532334--7532471	21	6.6	21	76	9	104	35	7	10	46	1.67
7532334--7532466	62	2.1	64	81	5	155	34	7	10	47	1.66
7532335--7532450	41	2.8	42	77	9	112	36	7	11	44	1.69
7532426--7532493	33	2.1	33	86	5	93	38	5	7	48	1.55
7532440--7532513	32	2.3	33	83	4	89	33	6	10	48	1.64
7532870--7532959	21	4.3	21	80	9	80	32	8	14	44	1.76
7533408--7533516	21	5.1	21	70	12	71	33	9	8	48	1.65
7533407--7533516	42	2.6	41	80	8	123	34	9	8	48	1.65
7534412--7534515	21	5.0	21	75	10	79	34	7	11	46	1.69
7534877--7534915	20	2.0	20	89	0	60	43	10	7	38	1.67
7535275--7535389	44	2.6	44	77	0	113	40	8	5	45	1.57
7535275--7535371	22	4.4	22	77	10	72	42	9	4	44	1.55
7535321--7535450	22	5.9	22	75	7	102	40	7	7	43	1.62
7535321--7535482	22	7.4	22	73	6	69	39	6	8	46	1.58
7535734--7535767	16	2.2	15	89	5	50	38	5	2	52	1.41
7535812--7535896	22	3.8	22	74	13	66	37	10	5	45	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7535907--7535953	21	2.2	22	88	3	69	34	8	6	51	1.58
7536290--7536319	14	2.1	14	93	0	51	40	13	0	46	1.43
7536349--7536392	22	2.0	21	87	12	63	40	4	9	45	1.56
7536403--7536454	27	1.9	27	84	0	68	38	7	3	50	1.50
7536474--7536530	22	2.5	22	74	2	60	43	14	1	40	1.55
7536656--7536868	22	9.7	22	68	14	102	36	10	3	49	1.55
7536829--7536868	21	1.9	20	89	5	53	37	7	2	52	1.43
7536923--7536989	22	3.0	22	82	0	89	38	5	5	49	1.52
7537105--7537155	21	2.4	21	78	15	52	37	11	1	49	1.51
7537117--7537164	22	2.2	21	81	3	60	33	10	4	52	1.55
7537821--7538089	142	1.9	143	80	7	314	34	13	9	43	1.75
7539548--7539618	34	2.3	30	79	15	81	46	2	0	50	1.16
7539933--7539959	14	1.9	14	100	0	54	44	7	7	40	1.60
7543436--7543479	16	2.8	16	86	3	54	27	2	2	68	1.14
7543448--7543479	16	2.0	16	93	0	55	28	0	0	71	0.86
7548726--7548767	12	3.4	13	80	9	52	42	0	0	57	0.99
7548726--7548785	23	2.5	24	84	12	72	41	3	1	53	1.27
7549628--7549679	24	2.1	26	82	7	63	34	3	5	55	1.42
7551622--7551651	2	15.5	2	93	6	53	50	0	0	50	1.00
7552353--7552392	21	1.9	21	85	10	55	55	2	0	42	1.13
7552811--7552850	1	40.0	1	100	0	80	100	0	0	0	0.00
7556965--7557000	11	3.2	11	88	7	54	41	16	11	30	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7557115--7557185	20	3.7	19	75	19	67	50	11	4	33	1.57
7557285--7557340	24	2.3	25	90	6	89	50	8	3	37	1.51
7557380--7557443	28	2.2	31	83	8	80	56	12	1	29	1.46
7557473--7557514	21	2.0	22	95	4	77	61	9	0	28	1.27
7557547--7557611	21	3.0	22	80	11	64	56	12	1	29	1.45
7557567--7557860	20	14.8	20	69	19	145	52	10	5	30	1.60
7557559--7557611	21	2.6	20	87	3	70	56	9	1	32	1.42
7557621--7557897	91	3.0	90	72	16	287	53	10	6	30	1.60
7557565--7557897	185	1.8	185	96	0	623	52	10	6	30	1.59
7557799--7557830	16	2.0	16	93	0	55	59	6	6	28	1.46
7557617--7557900	94	3.1	94	69	15	291	53	9	6	30	1.59
7558412--7558453	22	1.9	22	85	0	57	11	14	0	73	1.09
7561888--7561928	21	1.9	22	85	5	57	46	9	2	41	1.50
7564299--7564345	19	2.5	19	75	6	51	65	6	0	27	1.16
7567342--7567739	59	6.7	59	81	9	445	35	12	6	45	1.66
7567345--7567739	119	3.3	117	82	7	487	35	12	5	46	1.65
7567344--7567730	177	2.2	178	88	5	577	36	12	6	45	1.67
7567750--7567806	17	3.3	17	78	9	53	78	1	5	14	0.99
7567750--7567817	6	13.0	5	73	17	50	77	1	5	14	1.02
7567754--7567817	11	5.9	11	76	10	53	78	1	6	14	1.02
7568742--7568918	44	4.0	45	76	14	127	65	1	5	27	1.23
7568724--7568918	22	8.4	24	70	18	87	66	1	5	26	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7568790--7568918	4	32.8	4	73	14	56	67	0	4	27	1.15
7568840--7568875	17	2.2	17	90	5	56	77	0	5	16	0.94
7568910--7568966	25	2.3	25	81	6	71	68	3	5	22	1.25
7568947--7568994	7	7.3	6	80	15	51	79	0	2	18	0.84
7569142--7569167	11	2.4	11	100	0	52	0	0	7	92	0.39
7569182--7569328	45	3.4	42	82	7	179	39	23	15	21	1.92
7569182--7569349	41	4.0	41	82	7	165	39	22	16	22	1.91
7569318--7569377	28	2.1	28	93	0	102	41	18	21	18	1.90
7569277--7569418	69	2.1	69	93	2	241	39	21	18	20	1.93
7569346--7569473	46	3.0	42	85	9	186	38	22	16	22	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105