genome.fa.s135.2.7.7.80.10.50.1000.21.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  21  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4396051--4396084	17	2.0	17	94	0	59	8	0	14	76	1.01
4396845--4396916	20	3.7	20	83	7	103	40	4	8	47	1.53
4403457--4403505	27	1.9	25	88	12	73	18	4	8	69	1.30
4403674--4403724	20	2.5	21	84	6	61	25	5	15	52	1.65
4403733--4403768	16	2.2	16	90	0	54	38	8	2	50	1.47
4404478--4404513	12	3.0	12	87	0	54	61	8	11	19	1.54
4405493--4405547	25	2.2	25	90	0	83	49	5	12	32	1.64
4407862--4407913	6	8.7	6	75	8	52	1	19	0	78	0.84
4407871--4407913	19	2.4	17	85	11	59	2	18	0	79	0.85
4407867--4407914	18	2.5	19	86	6	71	2	18	0	79	0.84
4407963--4408026	19	3.4	18	77	12	58	7	14	1	76	1.07
4408001--4408025	10	2.5	10	100	0	50	0	8	0	92	0.40
4408087--4408130	24	1.9	22	90	9	70	6	18	0	75	1.02
4409185--4409235	26	1.9	27	92	4	86	21	0	3	74	0.98
4409259--4409289	14	2.2	14	94	0	53	9	0	6	83	0.79
4409250--4409275	10	2.6	10	100	0	52	15	0	7	76	0.99
4409319--4409515	46	4.5	45	77	12	187	46	12	8	32	1.70
4409359--4409431	37	2.0	37	94	0	128	41	15	6	36	1.73
4409322--4409477	83	1.9	83	86	0	222	44	12	8	34	1.73
4409397--4409555	46	3.5	46	79	6	153	45	15	7	31	1.73
4409635--4409702	31	2.2	32	86	2	93	32	17	16	33	1.92
4410046--4410108	28	2.3	27	81	5	72	19	23	1	55	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4412072--4412105	10	3.4	10	88	11	52	2	14	0	82	0.79
4412102--4412137	17	2.1	17	90	10	56	8	19	0	72	1.10
4412112--4412149	17	2.2	17	86	9	51	5	26	0	68	1.11
4413260--4413317	28	2.1	27	93	3	98	3	17	0	79	0.87
4414490--4414530	17	2.4	17	87	0	55	73	9	0	17	1.09
4421778--4422023	61	3.8	68	77	13	220	51	4	6	37	1.48
4421844--4422023	61	3.0	60	83	4	236	51	3	6	37	1.47
4433507--4433872	44	8.4	43	83	6	382	24	12	18	44	1.84
4435081--4435214	61	2.2	62	90	2	218	47	5	9	38	1.59
4435100--4435270	60	2.8	60	81	7	177	48	4	11	35	1.60
4443265--4443299	15	2.2	16	90	5	54	68	0	5	25	1.11
4443419--4443495	32	2.4	33	78	12	88	45	3	0	50	1.20
4446565--4446831	26	10.0	26	68	17	120	58	0	2	38	1.16
4446565--4446849	18	16.6	18	67	19	130	58	0	2	38	1.15
4446590--4446836	46	5.3	48	71	20	159	57	0	2	39	1.18
4446577--4446850	49	5.8	47	74	14	201	58	0	2	39	1.16
4446617--4446848	22	10.4	22	65	22	60	58	0	2	38	1.13
4446565--4446846	141	2.1	134	83	9	347	58	0	2	38	1.15
4446809--4446845	19	1.9	19	88	0	56	59	0	2	37	1.12
4446918--4446968	23	2.2	23	82	10	59	45	1	0	52	1.12
4447093--4447128	14	2.6	14	95	0	63	38	2	0	58	1.13
4447827--4447871	9	4.9	9	81	5	54	71	6	0	22	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4458279--4458330	21	2.5	21	90	6	79	50	0	0	50	1.00
4458279--4458330	22	2.5	22	93	6	90	50	0	0	50	1.00
4465763--4465796	16	2.1	16	94	0	59	11	8	44	35	1.72
4465912--4465977	34	1.9	34	96	0	123	28	9	21	40	1.83
4466859--4466897	21	1.9	21	89	5	62	33	12	10	43	1.77
4469462--4469509	16	2.9	16	81	15	53	66	0	0	33	0.92
4469460--4469519	27	2.2	28	87	3	86	70	0	0	30	0.88
4469454--4469513	12	4.7	12	74	13	57	68	0	0	31	0.90
4469945--4470027	34	2.4	35	75	15	93	44	0	2	53	1.13
4472828--4472863	2	18.5	2	94	5	65	0	50	0	50	1.00
4472828--4472860	17	1.9	17	100	0	66	0	51	0	48	1.00
4486259--4486309	3	17.0	3	100	0	102	66	0	0	33	0.92
4488409--4488441	17	2.0	17	94	5	59	36	6	0	57	1.23
4489812--4489845	9	3.6	9	85	14	50	64	0	0	35	0.94
4489815--4489870	24	2.5	23	83	11	64	60	1	3	33	1.24
4490006--4490039	9	3.6	9	85	14	50	35	0	0	64	0.94
4489860--4490616	257	3.0	253	85	7	927	34	7	5	51	1.54
4490469--4490760	138	2.1	141	88	7	434	35	5	7	51	1.53
4490607--4490905	165	1.8	164	89	2	456	36	6	5	51	1.50
4491192--4491220	2	15.0	2	92	7	51	51	0	0	48	1.00
4494614--4494658	23	2.0	23	82	8	56	57	22	0	20	1.40
4496186--4496243	30	1.9	30	89	0	89	24	15	10	50	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4497217--4497241	13	1.9	13	100	0	50	80	20	0	0	0.72
4498417--4498459	16	2.6	16	74	3	50	16	2	11	69	1.28
4498821--4498916	41	2.3	40	77	5	111	41	2	1	55	1.18
4499125--4499181	30	1.9	30	85	0	78	29	0	7	63	1.21
4499709--4499748	20	2.0	20	85	9	55	57	0	2	40	1.12
4500012--4500046	17	2.1	17	88	0	52	60	0	5	34	1.21
4501666--4501702	16	2.2	17	90	4	58	32	0	0	67	0.91
4501722--4501777	22	2.6	22	74	2	60	50	0	0	50	1.00
4501973--4502018	23	2.0	23	86	0	65	26	2	0	71	0.97
4502039--4502100	7	8.7	7	72	10	54	77	1	4	16	1.02
4502045--4502085	15	2.7	16	85	7	50	75	2	2	19	1.03
4502038--4502085	22	2.3	19	80	16	51	75	2	2	20	1.02
4504571--4504610	18	2.2	18	95	0	71	32	17	12	37	1.87
4504597--4504674	39	2.0	39	97	0	147	30	16	17	34	1.93
4508848--4508879	13	2.4	14	90	10	50	25	0	0	75	0.81
4509059--4509093	18	1.9	18	88	0	52	28	2	5	62	1.32
4509694--4509734	21	2.0	21	90	9	66	46	0	2	51	1.14
4509696--4509740	21	2.2	21	84	11	58	46	0	2	51	1.13
4509765--4509790	3	8.7	3	100	0	52	65	0	0	34	0.93
4510691--4510741	23	2.2	24	82	3	59	62	1	0	35	1.06
4511155--4511193	16	2.3	18	86	8	55	66	0	0	33	0.92
4511226--4511387	85	1.9	84	81	10	197	52	6	12	27	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4513725--4513773	20	2.3	22	82	10	57	79	0	16	4	0.88
4513772--4513832	28	2.1	29	82	8	72	63	1	1	32	1.13
4515944--4516007	21	3.0	22	75	13	78	43	12	9	34	1.75
4516028--4516097	22	3.2	22	81	0	86	31	4	24	40	1.74
4515987--4516102	44	2.6	44	84	0	133	33	8	18	39	1.81
4516086--4516141	22	2.5	22	79	0	67	32	25	19	23	1.98
4516144--4516199	22	2.6	21	72	16	51	28	14	26	30	1.95
4516536--4516587	26	2.0	27	85	11	72	42	9	19	28	1.82
4517680--4517713	13	2.6	13	90	9	52	0	14	0	85	0.60
4517749--4517806	29	2.0	29	83	12	75	13	24	13	48	1.79
4521142--4521188	22	2.1	22	84	7	60	61	6	6	25	1.44
4523615--4523663	7	6.6	7	77	13	53	77	0	4	18	0.92
4523714--4523770	18	3.2	17	76	16	53	75	3	3	17	1.09
4523887--4523929	19	2.3	19	84	8	52	67	0	0	32	0.91
4523924--4523966	18	2.4	19	88	7	63	81	2	4	11	0.93
4523925--4523965	19	2.2	18	86	4	55	85	2	4	7	0.81
4524158--4524231	29	2.6	28	77	10	80	63	0	0	36	0.95
4524521--4524658	72	1.9	72	96	0	258	43	7	7	40	1.63
4524950--4524996	13	3.5	13	77	11	58	68	0	2	29	1.02
4524957--4525013	17	3.8	15	77	13	64	68	0	1	29	1.00
4524950--4524996	7	6.9	7	76	13	53	68	0	2	29	1.02
4525816--4525859	14	3.1	14	81	15	54	59	0	0	40	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4525834--4525866	14	2.4	14	95	5	59	63	0	0	36	0.95
4526035--4526068	3	11.3	3	100	0	68	32	0	0	67	0.91
4526057--4526262	102	2.0	102	96	0	376	36	10	17	34	1.84
4529663--4529728	19	3.4	19	80	12	55	21	1	36	40	1.62
4529788--4530007	27	8.2	26	74	9	142	15	4	36	43	1.67
4529788--4530108	80	3.9	80	74	9	231	15	4	35	43	1.68
4529824--4530109	27	10.5	26	72	11	173	15	4	36	43	1.67
4529950--4530116	87	1.9	87	87	2	246	15	4	35	44	1.68
4532245--4532307	11	5.2	11	78	16	54	19	3	1	76	1.01
4532245--4532312	18	3.7	18	77	9	66	20	2	1	75	1.02

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105