genome.fa.s135.2.7.7.80.10.50.1000.81.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  81  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14281328--14281681	175	2.0	176	96	0	656	42	10	9	37	1.72
14287615--14287796	72	2.5	71	80	2	213	39	17	16	26	1.91
14293782--14293967	72	2.6	72	87	1	284	36	19	19	25	1.95
14298107--14298142	17	2.1	17	90	10	56	77	0	0	22	0.76
14298107--14298203	8	11.2	8	71	15	52	75	2	3	19	1.04
14298121--14298200	28	2.9	26	75	14	72	73	2	3	20	1.10
14298580--14298627	20	2.4	20	79	10	53	52	18	4	25	1.63
14298625--14298707	21	4.0	21	85	3	96	50	27	2	19	1.60
14299037--14299078	15	2.8	15	85	0	57	59	7	7	26	1.50
14299079--14299103	12	2.1	12	100	0	50	76	8	0	16	1.02
14302591--14302831	14	16.4	14	63	13	58	21	1	26	49	1.57
14302694--14302727	16	2.2	16	89	5	52	26	0	29	44	1.55
14302755--14302834	41	1.9	42	87	2	117	25	1	25	48	1.58
14303181--14303225	22	2.0	22	87	8	65	26	4	0	68	1.08
14303186--14303226	10	4.2	10	84	6	57	26	2	0	70	0.99
14304527--14304569	17	2.4	18	88	11	63	6	6	9	76	1.15
14304562--14304602	14	2.8	15	85	3	57	0	9	7	82	0.83
14306284--14306353	3	23.3	3	91	0	113	37	0	28	34	1.58
14306284--14306400	6	19.5	6	96	0	99	48	0	17	33	1.48
14306340--14306398	3	19.7	3	92	0	100	62	0	3	33	1.12
14306286--14306400	9	12.8	9	93	0	77	49	0	17	33	1.47
14306400--14306427	13	2.2	13	100	0	56	50	21	7	21	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14309278--14309457	48	3.8	48	73	14	151	31	7	16	43	1.76
14309329--14309466	43	3.1	44	75	15	122	29	7	16	46	1.74
14309255--14309599	91	3.7	91	76	8	309	29	8	16	44	1.78
14309404--14309625	97	2.3	97	83	5	270	29	8	15	46	1.75
14311021--14311082	22	2.7	24	73	19	60	19	9	1	69	1.25
14311068--14311104	19	1.9	19	100	0	74	24	0	0	75	0.80
14311072--14311105	17	2.1	16	88	5	50	23	0	0	76	0.79
14311313--14311362	25	2.0	25	88	7	75	72	4	8	16	1.24
14311799--14311843	16	2.8	17	83	16	60	75	2	0	22	0.91
14313097--14313141	3	15.0	3	100	0	90	33	0	0	66	0.92
14315471--14315537	24	2.8	22	76	13	62	71	2	7	17	1.22
14315483--14315537	23	2.3	23	76	11	58	70	3	7	18	1.25
14316815--14317017	65	3.2	63	75	4	196	47	11	18	22	1.80
14316814--14317018	63	3.2	64	75	7	172	47	11	18	22	1.80
14318967--14319187	110	2.0	110	100	0	442	35	17	20	26	1.95
14328380--14328418	18	2.2	18	95	0	69	28	7	25	38	1.83
14329132--14329184	22	2.4	21	84	6	70	75	1	9	13	1.12
14331072--14331149	19	3.9	19	68	12	57	47	0	0	52	1.00
14331072--14331136	14	4.4	14	71	13	51	44	0	0	55	0.99
14331086--14331163	21	3.8	20	75	9	68	46	0	0	53	1.00
14331110--14331221	38	3.0	37	70	19	90	48	2	1	47	1.26
14333618--14333778	63	2.6	61	73	12	146	33	18	11	36	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14338255--14338389	62	2.2	63	82	6	159	38	15	14	31	1.88
14338422--14338545	55	2.3	55	94	0	221	37	17	13	31	1.89
14338590--14338710	64	1.9	64	86	6	174	42	10	6	39	1.66
14338590--14338736	64	2.3	64	80	6	156	42	10	7	40	1.67
14338477--14339189	372	1.9	369	87	2	1052	39	15	11	34	1.82
14339143--14339337	93	2.1	94	83	3	250	33	19	10	36	1.86
14344046--14344091	22	2.0	24	83	8	60	34	6	4	54	1.46
14346122--14346248	68	1.9	68	91	3	211	37	7	14	40	1.74
14346935--14346981	24	2.0	24	83	8	60	55	0	2	42	1.12
14350578--14350632	23	2.4	23	78	6	58	60	1	3	34	1.25
14367758--14367790	16	2.1	16	94	0	57	45	6	9	39	1.61
14370993--14371040	24	2.0	24	100	0	96	37	8	20	33	1.83
14373633--14373810	27	6.6	27	80	3	153	15	35	20	28	1.93
14373592--14373789	54	3.7	54	79	0	162	18	33	19	28	1.95
14373633--14373810	81	2.2	80	80	4	187	15	35	20	28	1.93
14373769--14373828	27	2.2	27	84	0	75	16	38	16	28	1.91
14373713--14373828	54	2.2	53	81	7	135	13	39	18	27	1.89
14375885--14375922	12	3.2	12	100	0	76	36	0	0	63	0.95
14375869--14375925	12	4.1	14	80	15	57	38	0	0	61	0.96
14375947--14375995	21	2.5	20	78	18	57	51	0	0	48	1.00
14376419--14376468	16	2.9	18	76	11	59	66	2	0	32	1.03
14377788--14377857	36	2.0	35	82	2	86	40	0	4	55	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14378732--14378756	12	2.1	12	100	0	50	24	8	0	68	1.16
14379445--14379492	16	2.9	16	81	9	60	52	0	0	47	1.00
14380208--14380258	24	2.1	24	85	0	66	50	11	9	27	1.70
14386131--14386171	20	2.0	20	90	0	64	58	0	2	39	1.11
14387326--14387379	28	2.0	27	82	13	67	35	0	0	64	0.94
14387953--14388046	19	5.1	19	69	19	56	50	0	1	48	1.07
14391759--14391828	34	2.1	34	94	0	122	44	12	12	30	1.80
14394746--14394808	27	2.4	26	86	2	81	52	0	9	38	1.34
14396627--14396720	14	6.8	13	67	14	55	75	2	3	19	1.04
14396628--14396756	6	21.5	6	68	24	60	75	2	3	19	1.05
14396671--14396753	19	4.3	19	73	13	71	73	3	2	20	1.10
14396629--14396738	37	2.9	37	80	12	127	74	2	2	20	1.06
14396628--14396746	12	9.8	12	73	25	67	73	2	2	21	1.06
14396998--14397036	19	2.1	19	85	0	51	46	25	5	23	1.73
14397589--14397732	3	53.3	3	66	22	79	57	5	0	36	1.27
14397589--14397732	16	8.8	17	76	18	110	57	5	0	36	1.27
14397597--14397761	5	31.6	5	75	14	113	56	8	0	35	1.30
14398084--14398296	55	3.9	55	79	6	184	40	15	21	22	1.90
14398083--14398345	110	2.4	111	79	6	284	40	16	20	22	1.91
14397988--14398296	165	1.9	166	81	5	383	41	15	20	22	1.90
14398118--14398348	55	4.2	55	81	3	214	39	17	21	21	1.92
14397988--14398317	166	2.0	166	79	4	362	41	16	20	21	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14399098--14399136	13	2.9	14	80	7	53	12	2	2	82	0.89
14400109--14400154	24	1.9	24	86	0	65	23	15	21	39	1.92
14402757--14402811	25	2.3	25	81	6	69	52	20	7	20	1.69
14403351--14403382	16	2.0	16	93	0	55	40	12	15	31	1.85
14410931--14410962	16	1.9	17	93	6	57	87	0	3	9	0.64
14410867--14410963	27	3.5	27	78	8	95	75	8	2	14	1.12
14411845--14411884	17	2.4	17	82	0	53	30	30	22	17	1.97
14411972--14412015	19	2.3	19	81	18	56	25	0	2	72	0.96
14412412--14412478	16	4.2	16	75	7	73	49	31	1	17	1.56
14412413--14412480	32	2.2	31	83	2	82	47	33	1	17	1.57
14414547--14414614	25	2.7	25	77	11	68	73	2	5	17	1.16
14414579--14414671	19	4.8	18	73	13	71	72	2	4	21	1.13
14415530--14415656	5	24.6	5	71	12	69	54	10	0	34	1.40
14415527--14415651	23	5.7	23	71	20	83	55	9	0	34	1.38
14415512--14415651	13	10.2	13	72	16	72	54	10	1	34	1.43
14418558--14418621	24	2.7	23	75	13	76	51	7	4	35	1.52
14419151--14419197	2	23.5	2	95	0	85	48	2	0	48	1.13
14420945--14421026	42	1.9	42	82	9	103	41	10	12	35	1.78
14420961--14421040	21	3.8	21	72	20	76	43	7	11	37	1.69
14421030--14421098	18	3.7	18	71	7	66	44	8	11	34	1.72
14421067--14421135	18	3.8	19	72	14	65	47	5	14	31	1.68
14421169--14421214	18	2.5	19	78	7	58	52	4	8	34	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14421317--14421350	18	1.9	18	88	5	52	47	14	5	32	1.69
14421432--14421487	17	3.3	17	80	7	69	32	12	14	41	1.83
14421440--14421538	32	3.1	33	74	12	98	33	13	15	38	1.86
14421440--14421501	17	3.7	17	78	4	63	35	11	14	38	1.82
14421505--14421567	17	3.8	17	69	12	51	28	12	17	41	1.86
14421494--14421566	32	2.3	32	85	4	94	32	13	16	36	1.88
14421592--14421621	13	2.3	13	94	0	51	40	23	3	33	1.71
14421682--14421785	37	2.8	38	89	2	158	43	14	6	35	1.72
14421756--14421807	22	2.3	23	80	6	61	46	11	1	40	1.51
14421964--14422001	20	2.1	18	85	14	51	39	10	0	50	1.37

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105