genome.fa.s135.2.7.7.80.10.50.1000.88.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  88  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15456749--15456792	22	2.1	20	87	8	61	18	2	4	75	1.09
15457263--15457318	22	2.6	21	85	5	67	75	7	3	14	1.16
15457263--15457318	21	2.6	22	82	5	69	75	7	3	14	1.16
15457285--15457327	22	2.0	22	90	4	70	76	4	2	16	1.05
15458069--15458113	23	2.0	23	81	0	54	13	0	53	33	1.40
15458187--15458212	10	2.6	10	100	0	52	76	0	0	23	0.78
15458546--15458657	44	2.6	44	78	4	111	41	13	11	33	1.81
15458591--15458689	44	2.3	44	82	5	112	39	15	12	33	1.84
15469772--15469797	11	2.4	11	100	0	52	0	7	7	84	0.77
15471825--15471870	8	5.4	8	85	10	56	8	0	6	84	0.77
15471801--15471869	19	3.6	19	74	18	54	8	1	8	81	0.95
15471802--15471870	27	2.6	26	82	8	77	7	1	8	82	0.90
15472820--15472863	22	2.1	20	87	8	61	18	2	4	75	1.09
15473277--15473316	3	13.3	3	100	0	80	35	0	0	65	0.93
15473382--15473427	22	2.2	20	84	7	56	69	6	4	19	1.28
15489653--15489731	29	2.8	28	80	3	86	55	12	7	24	1.62
15495454--15495580	52	2.4	52	80	2	148	27	22	7	41	1.81
15495613--15495749	51	2.7	51	81	3	132	47	4	16	31	1.66
15500217--15500324	11	9.9	11	76	9	96	47	1	2	48	1.27
15500327--15500363	17	2.2	17	90	0	56	45	2	8	43	1.47
15500237--15500422	21	8.7	21	70	11	76	46	2	4	46	1.36
15500395--15500447	19	2.8	18	80	8	52	47	1	1	49	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15500433--15500482	11	4.7	11	74	18	52	38	6	2	54	1.37
15500411--15500491	31	2.6	31	88	1	110	38	3	3	54	1.36
15500539--15500606	31	2.3	29	76	5	73	45	0	2	51	1.16
15502756--15502823	22	3.2	22	80	14	81	38	0	0	61	0.96
15502809--15502863	23	2.3	25	90	6	87	45	0	0	54	0.99
15502825--15502870	23	2.0	23	91	4	74	47	0	0	52	1.00
15502920--15502966	18	2.7	17	78	12	51	61	2	0	36	1.08
15505446--15505474	2	15.0	2	92	7	51	48	0	0	51	1.00
15508582--15508615	15	2.3	15	89	0	50	26	0	17	55	1.42
15509371--15509420	3	16.7	3	100	0	100	34	0	0	66	0.92
15511423--15511451	11	2.7	11	94	5	51	51	0	0	48	1.00
15512464--15512513	15	3.6	14	81	13	50	66	8	0	26	1.19
15512526--15512597	23	3.0	24	86	9	103	59	8	4	27	1.45
15513490--15513520	15	2.0	16	93	6	55	41	0	0	58	0.98
15513770--15513800	12	2.6	12	94	0	53	70	3	0	25	1.02
15514838--15514982	55	2.6	58	81	12	176	46	6	9	37	1.62
15518789--15518828	12	3.3	12	83	13	55	50	7	0	42	1.30
15522408--15522442	15	2.4	15	90	4	54	25	2	0	71	1.00
15522418--15522465	16	2.9	16	84	3	51	10	6	2	81	0.95
15522854--15522903	22	2.4	21	80	9	57	10	4	10	76	1.15
15522979--15523023	19	2.4	18	82	10	54	26	15	20	37	1.92
15523258--15523286	12	2.3	13	94	5	51	3	27	0	68	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15523270--15523321	25	2.1	24	82	3	59	13	9	1	75	1.14
15541767--15542089	112	2.8	113	78	5	330	25	24	13	36	1.92
15542434--15542471	8	4.9	8	80	6	51	7	2	2	86	0.74
15542434--15542473	15	2.6	15	88	4	53	7	2	2	87	0.71
15542847--15542884	20	1.9	20	88	0	58	10	0	15	73	1.09
15543250--15543290	19	2.2	19	86	8	57	14	4	2	78	1.03
15544368--15544424	29	2.0	29	86	6	80	56	14	1	28	1.48
15545011--15545056	20	2.4	18	83	16	58	71	2	4	21	1.14
15545349--15545427	38	2.1	38	83	4	97	45	1	8	44	1.43
15545923--15545966	18	2.5	17	82	10	52	50	9	2	38	1.47
15546557--15546598	17	2.4	18	84	8	59	42	2	0	54	1.13
15547049--15547078	2	15.5	2	93	6	53	50	0	0	50	1.00
15547596--15547639	13	2.9	16	80	19	58	34	0	0	65	0.93
15549933--15550097	80	2.1	80	97	0	312	28	21	6	43	1.77
15553648--15553692	20	2.2	20	96	0	81	48	0	0	51	1.00
15556649--15556685	2	19.0	2	88	5	58	51	2	0	45	1.15
15562108--15562132	6	4.2	6	100	0	50	32	0	32	36	1.58
15563783--15563807	2	12.5	2	100	0	50	52	0	0	48	1.00
15567920--15567980	23	2.7	23	78	0	68	62	0	0	37	0.96
15568933--15568981	23	2.1	23	81	7	55	57	2	4	36	1.30
15569179--15569238	25	2.6	23	80	19	63	61	0	0	38	0.96
15582078--15582103	3	8.7	3	100	0	52	69	0	0	30	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15583763--15583818	24	2.4	24	82	8	62	30	0	10	58	1.32
15597670--15597708	16	2.4	16	83	8	53	56	0	0	43	0.99
15597748--15597795	19	2.6	19	77	6	55	47	0	0	52	1.00
15598838--15598889	26	2.0	26	82	10	63	51	0	9	38	1.35
15600829--15600869	21	2.0	21	90	0	64	19	17	19	43	1.88
15601119--15601153	18	1.9	18	94	0	61	57	0	0	42	0.99
15601720--15601758	18	2.2	18	86	9	53	51	0	0	48	1.00
15603904--15603960	21	2.7	21	78	13	64	78	15	1	3	0.96
15605063--15605151	15	5.9	14	74	17	63	55	26	0	17	1.43
15607213--15607250	13	2.9	13	84	7	51	65	0	5	28	1.14
15612051--15612171	63	1.9	63	81	3	145	43	6	9	40	1.62
15614759--15614788	14	2.1	14	100	0	60	36	0	0	63	0.95
15618937--15619006	34	2.1	34	88	0	104	44	1	11	42	1.49
15620081--15620129	23	2.1	23	88	7	73	51	10	4	34	1.55
15621652--15621690	20	2.0	19	85	5	51	41	0	7	51	1.31
15621921--15622071	59	2.6	59	82	2	196	21	2	19	56	1.54
15622019--15622095	33	2.2	33	82	11	84	24	1	14	59	1.42
15627051--15627088	11	3.5	11	89	7	51	5	10	0	84	0.77
15627051--15627088	10	3.6	10	92	7	58	5	10	0	84	0.77
15630906--15630977	3	24.0	3	82	0	90	33	2	30	33	1.72
15633684--15633721	19	2.0	20	89	5	60	42	2	5	50	1.39
15633729--15633767	20	1.9	19	85	10	51	30	5	10	53	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15633880--15633916	20	1.9	19	89	10	58	40	5	5	48	1.49
15633880--15633939	21	2.9	21	85	9	70	36	5	8	50	1.55
15635669--15635710	22	1.9	22	85	0	57	26	11	23	38	1.90
15638292--15638347	28	2.0	27	83	10	69	58	1	1	37	1.19
15638344--15638374	15	2.1	15	93	0	53	41	0	6	51	1.27
15639311--15639363	24	2.2	24	86	6	72	9	1	54	33	1.43
15639367--15639440	36	2.1	36	94	0	130	17	12	45	24	1.82
15645858--15645916	25	2.3	26	88	5	84	72	0	1	25	0.93
15645858--15645896	11	3.3	11	80	19	51	74	0	2	23	0.94
15645888--15645947	5	12.2	5	79	10	61	75	1	0	23	0.90
15646420--15646459	16	2.6	15	85	14	55	55	2	5	37	1.35
15647728--15647753	3	8.7	3	100	0	52	0	0	30	69	0.89
15650445--15650484	21	1.9	21	85	10	55	40	12	7	40	1.71
15662069--15662118	25	2.0	26	81	14	61	44	4	12	40	1.60
15663362--15663411	22	2.2	21	83	13	64	68	10	4	18	1.34
15663392--15663453	29	2.1	29	82	5	72	69	6	4	19	1.29
15663680--15663710	14	2.2	14	94	0	53	48	6	9	35	1.62
15665975--15666041	29	2.3	30	85	10	86	46	5	13	34	1.68
15669327--15669405	34	2.3	34	82	4	97	44	8	13	32	1.75
15671035--15671083	18	2.7	18	90	0	71	30	8	30	30	1.86
15671035--15671102	33	2.0	35	83	13	88	29	8	29	32	1.87
15674548--15674606	27	2.2	28	84	9	86	55	6	0	37	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15674691--15674722	16	2.0	16	93	0	55	65	0	0	34	0.93
15677201--15677242	21	2.0	21	85	0	57	54	7	11	26	1.62
15683029--15683079	22	2.3	22	96	0	93	23	27	3	45	1.70
15685567--15685619	20	2.7	18	75	18	52	71	0	13	15	1.14
15689171--15689206	2	18.0	2	100	0	72	0	50	0	50	1.00
15689559--15689584	2	13.0	2	100	0	52	50	0	0	50	1.00
15689883--15689917	2	18.0	2	94	5	63	51	0	0	48	1.00
15692722--15692790	33	2.1	33	91	0	111	33	17	18	30	1.94
15693266--15695161	894	2.1	889	80	4	2044	38	7	18	35	1.79
15698825--15698883	7	8.1	7	75	14	57	40	0	5	54	1.23

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105