genome.fa.s135.2.7.7.80.10.50.1000.76.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  76  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13295600--13295715	3	37.3	3	71	16	67	70	2	1	25	1.09
13295603--13295711	49	2.3	47	85	7	148	70	2	1	24	1.10
13303035--13303070	2	18.0	2	88	0	54	50	0	0	50	1.00
13304203--13304242	15	2.6	16	84	7	57	55	0	0	45	0.99
13304248--13304296	19	2.6	19	80	0	62	46	8	10	34	1.67
13304302--13304373	30	2.3	29	84	13	83	55	1	0	43	1.08
13304338--13304399	26	2.3	26	76	10	63	58	3	0	38	1.15
13304640--13304698	31	1.9	31	100	0	118	57	8	6	27	1.53
13304787--13304816	3	10.0	3	100	0	60	0	33	0	66	0.92
13308469--13308907	220	2.0	218	95	1	781	33	15	11	39	1.83
13313556--13313639	27	3.4	25	75	12	68	50	1	1	47	1.16
13317623--13317688	6	12.0	6	72	18	63	37	0	0	62	0.96
13317621--13317683	10	7.0	9	76	18	60	38	0	0	61	0.96
13317619--13317688	26	2.6	26	95	4	122	38	0	0	61	0.96
13317621--13317728	26	4.3	24	86	9	94	42	0	0	56	1.05
13317675--13317738	22	2.7	22	88	11	83	46	1	0	51	1.10
13318438--13318474	11	3.5	11	82	10	51	45	0	0	54	1.00
13323413--13323446	12	2.8	12	86	0	50	38	20	11	29	1.88
13328357--13328956	303	2.0	303	95	0	1074	32	12	18	36	1.89
13332297--13332369	33	2.2	33	90	0	110	36	20	15	27	1.92
13332228--13332471	135	1.8	134	85	2	346	39	19	12	29	1.88
13334198--13334235	16	2.4	16	86	8	51	18	5	0	76	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13334958--13334986	1	29.0	1	100	0	58	100	0	0	0	0.00
13337503--13337527	11	2.3	11	100	0	50	92	0	8	0	0.40
13342467--13342552	19	4.4	19	73	16	61	79	1	17	2	0.91
13342638--13342674	19	1.9	19	89	10	58	75	18	5	0	0.99
13342995--13343043	23	2.1	23	85	11	64	75	0	14	10	1.04
13343060--13343103	7	6.1	7	82	12	54	81	0	6	11	0.86
13343067--13343124	23	2.6	21	89	10	89	79	0	12	8	0.94
13343082--13343259	81	2.2	82	92	2	295	66	2	25	5	1.23
13345662--13345754	13	6.8	13	72	13	71	49	33	1	16	1.53
13345644--13345692	21	2.3	23	79	13	59	44	34	0	20	1.52
13345686--13345762	20	3.8	20	72	13	66	49	32	1	16	1.54
13345607--13345741	57	2.3	58	85	7	177	46	32	0	20	1.51
13345607--13345741	29	4.7	29	83	4	148	46	32	0	20	1.51
13345732--13345775	21	2.2	20	95	4	79	54	27	4	13	1.58
13345752--13345785	14	2.4	14	90	0	50	55	26	2	14	1.53
13345766--13345950	29	6.3	29	75	7	151	47	33	1	17	1.55
13345897--13345952	15	3.8	15	72	13	53	46	39	0	14	1.44
13345884--13345931	14	3.4	14	72	16	53	50	37	0	12	1.41
13345867--13346025	74	2.1	75	80	7	173	46	35	0	17	1.53
13345941--13346067	30	4.3	30	73	15	97	48	32	1	18	1.58
13352876--13352917	17	2.5	18	88	11	63	85	4	4	4	0.82
13352876--13352918	16	2.6	17	89	7	63	83	4	6	4	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13354566--13354682	37	3.2	37	78	3	121	19	19	12	47	1.81
13354690--13354806	22	5.3	22	74	5	101	33	19	13	33	1.91
13354753--13355176	132	3.2	130	78	8	403	26	20	15	37	1.92
13355269--13355352	22	3.8	22	78	9	64	28	25	17	28	1.98
13357286--13357734	29	15.3	28	75	10	294	46	32	1	19	1.57
13357371--13357722	119	2.9	118	81	9	412	47	32	1	19	1.57
13359782--13359820	13	3.0	13	88	0	51	25	17	12	43	1.85
13362473--13362498	10	2.6	10	100	0	52	46	0	0	53	1.00
13362478--13362527	18	2.8	17	74	11	55	52	0	2	46	1.12
13365311--13365355	23	1.9	23	90	4	72	40	2	0	57	1.11
13365324--13365351	14	2.0	14	100	0	56	35	0	0	64	0.94
13373655--13373695	2	21.0	2	95	5	75	48	0	0	51	1.00
13374936--13375027	44	2.1	44	97	2	177	41	13	20	25	1.88
13379413--13379460	17	2.6	17	78	12	51	75	0	18	6	1.01
13379801--13379828	11	2.5	11	100	0	56	89	0	10	0	0.49
13379966--13380009	17	2.6	17	85	3	54	56	2	0	40	1.11
13381037--13381076	17	2.4	17	91	8	64	70	0	0	30	0.88
13384710--13384782	21	3.5	20	71	15	58	39	19	8	32	1.81
13384898--13384996	38	2.6	37	79	4	101	41	11	15	32	1.82
13384905--13384989	19	4.6	18	79	4	89	40	11	17	30	1.86
13385170--13385231	18	3.5	18	70	10	56	37	9	14	38	1.79
13385224--13385295	15	4.6	16	67	16	51	40	11	5	43	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13385221--13385301	16	5.1	16	69	8	58	43	9	6	40	1.63
13385221--13385302	31	2.6	32	75	5	87	43	9	6	40	1.62
13385575--13385803	109	2.1	107	84	3	298	37	14	9	38	1.79
13385791--13385897	24	4.3	24	78	9	117	41	15	2	40	1.62
13387022--13387131	9	13.1	9	85	12	130	11	10	0	76	1.07
13387025--13387129	8	12.8	8	86	9	115	11	9	0	78	1.02
13387022--13387131	16	6.6	17	87	8	147	11	10	0	76	1.07
13392496--13392566	30	2.4	28	77	15	70	45	0	9	45	1.37
13392772--13392817	21	2.3	19	81	7	56	36	0	2	60	1.09
13393329--13393357	13	2.1	14	93	6	51	58	0	0	41	0.98
13403076--13403128	24	2.2	25	80	16	67	56	7	1	33	1.38
13403027--13403128	6	17.0	6	74	4	53	58	7	0	32	1.33
13408302--13408350	2	24.5	2	80	0	53	38	0	6	55	1.25
13408302--13408350	16	3.1	16	87	0	80	38	0	6	55	1.25
13410739--13410763	11	2.3	11	100	0	50	44	0	0	56	0.99
13416326--13416373	4	11.8	4	86	4	60	16	0	6	77	0.97
13416911--13416941	14	2.3	14	94	5	55	74	0	0	25	0.82
13417196--13417269	32	2.3	33	97	2	141	48	9	10	31	1.70
13422517--13422594	39	1.9	42	87	7	117	33	0	6	60	1.22
13424500--13424536	18	2.1	18	100	0	74	29	0	5	64	1.15
13430379--13430416	16	2.3	16	90	4	58	84	5	5	5	0.88
13433265--13433379	45	2.5	45	78	12	126	33	8	21	36	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13435415--13435481	20	3.3	21	77	8	59	25	19	28	26	1.99
13435502--13435544	19	2.3	19	87	0	59	18	2	6	72	1.19
13438586--13438625	21	1.9	21	85	10	55	47	2	35	15	1.58
13447836--13447940	33	3.2	32	77	8	95	35	23	9	31	1.87
13448032--13448252	34	6.5	34	77	5	196	27	9	21	40	1.85
13448032--13448252	68	3.2	68	77	6	223	27	9	21	40	1.85
13448075--13448264	102	1.8	104	83	6	253	27	8	22	41	1.83
13448399--13448506	36	3.0	36	79	11	114	24	9	23	43	1.82
13449265--13449297	14	2.4	14	90	5	50	27	9	0	63	1.24
13449300--13449331	3	10.7	3	100	0	64	31	0	0	68	0.90
13450232--13450281	3	17.3	3	75	8	50	26	2	6	66	1.26
13450232--13450281	22	2.2	24	92	7	86	26	2	6	66	1.26
13450786--13450948	54	2.9	55	76	12	161	39	8	12	39	1.74
13451231--13452064	448	1.9	446	92	1	1420	35	17	12	35	1.87
13452285--13452333	20	2.5	20	93	3	82	77	18	4	0	0.92
13454511--13454535	2	12.5	2	100	0	50	48	0	0	52	1.00
13454805--13454842	18	2.1	19	85	5	51	36	0	0	63	0.95
13455259--13455297	11	3.5	11	96	0	69	35	0	0	64	0.94
13457387--13457432	21	2.1	21	84	11	58	58	0	0	41	0.98
13458106--13458151	17	2.7	17	86	0	65	41	21	4	32	1.73
13464410--13464463	25	2.2	25	77	6	58	61	14	0	24	1.34
13464533--13464593	23	2.7	24	75	10	65	59	22	0	18	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13464434--13464598	59	2.8	59	81	4	172	60	18	1	20	1.44
13465936--13465965	2	15.0	2	92	0	51	46	0	3	50	1.18
13466731--13466769	10	3.7	10	80	12	51	56	0	2	41	1.13
13467132--13467188	29	1.9	30	82	10	73	50	8	0	40	1.33
13468479--13468514	2	18.5	2	88	5	56	47	2	0	50	1.15
13468603--13468660	28	2.1	28	100	0	116	39	6	6	46	1.57
13468762--13468811	21	2.5	20	78	12	57	34	4	4	58	1.36
13470458--13470515	30	2.0	29	86	3	80	50	1	12	36	1.50
13477494--13477533	20	2.0	20	85	9	55	37	2	7	52	1.43
13477657--13477695	20	2.0	20	85	10	53	53	0	5	41	1.23

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105