genome.fa.s135.2.7.7.80.10.50.1000.92.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  92  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16255991--16256101	28	3.8	29	80	5	118	22	0	27	49	1.50
16255991--16256093	14	7.1	14	70	9	64	21	0	28	50	1.49
16256053--16256189	15	8.9	15	68	20	70	21	2	32	44	1.64
16256137--16256244	16	6.8	16	72	12	55	25	2	25	46	1.66
16256132--16256244	47	2.4	48	79	10	124	23	2	26	46	1.65
16256113--16256192	31	2.5	30	80	13	90	20	3	32	43	1.69
16256176--16256245	31	2.2	32	89	5	106	25	2	22	48	1.64
16257741--16257771	3	10.3	3	100	0	62	35	0	0	64	0.94
16257716--16257745	16	1.9	16	93	6	53	36	0	0	63	0.95
16258011--16258048	18	2.1	18	100	0	76	36	26	15	21	1.93
16261537--16261567	1	31.0	1	100	0	62	0	0	100	0	0.00
16262713--16262777	16	4.0	16	86	8	78	35	0	0	64	0.94
16262768--16262811	21	2.2	20	88	8	63	45	2	0	52	1.13
16262774--16262820	21	2.2	22	88	3	69	46	4	0	48	1.21
16263809--16263850	2	21.0	2	95	0	75	47	0	0	52	1.00
16271598--16271633	2	18.0	2	100	0	72	50	0	0	50	1.00
16274213--16274257	21	2.1	21	87	0	63	46	20	6	26	1.75
16278357--16278382	2	13.0	2	100	0	52	50	0	0	50	1.00
16284105--16284158	27	2.0	27	82	7	65	35	1	3	59	1.26
16285309--16285367	2	29.5	2	100	0	118	49	0	0	50	1.00
16288227--16288257	16	1.9	16	100	0	62	35	6	0	58	1.24
16288650--16288686	2	18.5	2	100	0	74	0	48	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16294018--16294073	24	2.3	24	90	0	85	41	3	0	55	1.17
16294192--16294244	24	2.2	24	89	0	79	41	3	0	54	1.18
16296025--16296222	98	2.0	98	91	0	315	23	21	27	27	1.99
16300014--16300278	133	2.0	133	93	0	449	24	14	19	41	1.89
16306302--16306341	21	1.9	21	90	10	64	42	12	0	45	1.42
16306324--16306368	22	2.1	21	83	4	54	48	11	0	40	1.39
16308241--16308280	3	13.3	3	94	0	71	35	30	0	35	1.58
16309191--16309240	25	2.0	25	100	0	100	40	12	12	36	1.79
16310637--16310840	72	2.8	72	92	0	336	28	23	16	31	1.96
16311817--16311854	11	3.6	11	82	10	53	23	0	0	76	0.79
16311815--16311861	20	2.3	20	75	7	51	19	4	0	76	0.95
16314349--16314448	52	1.9	51	81	2	119	30	16	6	48	1.70
16316300--16316346	11	4.2	11	82	15	60	65	0	2	31	1.04
16321872--16321924	11	4.8	11	80	0	61	28	0	18	52	1.46
16321994--16322104	51	2.1	53	81	3	127	50	6	13	29	1.66
16322217--16322260	21	2.1	21	95	0	79	18	0	29	52	1.46
16322289--16322352	33	1.9	33	93	0	110	32	3	25	39	1.71
16323606--16323646	2	20.5	2	100	0	82	51	0	0	48	1.00
16325796--16325866	29	2.4	30	80	2	81	45	1	14	39	1.53
16328436--16328540	30	3.5	31	75	12	94	46	0	10	42	1.38
16329244--16329283	3	13.3	3	100	0	80	65	0	0	35	0.93
16329282--16329322	3	13.7	3	100	0	82	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16334993--16335051	27	2.3	27	82	5	77	28	0	20	50	1.48
16336424--16336475	25	2.0	26	88	3	79	32	13	21	32	1.92
16339092--16339268	90	2.0	90	94	0	309	32	20	12	33	1.91
16340237--16340262	2	13.0	2	100	0	52	50	0	0	50	1.00
16342040--16342069	10	3.1	10	95	4	53	36	0	0	63	0.95
16342042--16342071	9	3.2	9	95	4	51	36	0	0	63	0.95
16344733--16344844	40	2.7	40	79	16	106	41	0	0	57	1.11
16344751--16344816	25	2.6	26	85	9	91	45	0	0	54	0.99
16346322--16346364	19	2.2	19	83	8	50	41	0	2	55	1.12
16353560--16353589	6	5.0	6	91	0	51	16	20	33	30	1.94
16354009--16354074	27	2.4	28	76	14	75	54	0	0	45	0.99
16353996--16354075	18	4.6	18	75	9	69	55	0	0	45	0.99
16353996--16354080	27	3.3	26	73	16	70	55	0	0	44	0.99
16354689--16354885	107	1.9	106	87	3	290	48	8	10	32	1.68
16355020--16355048	13	2.1	14	93	6	51	51	0	13	34	1.42
16355239--16355273	13	2.7	13	90	0	52	40	0	2	57	1.14
16355311--16355356	10	4.7	10	81	5	58	65	0	0	34	0.93
16355313--16355356	20	2.2	20	96	4	81	68	0	0	31	0.90
16370945--16371011	33	2.0	33	88	0	98	13	17	37	31	1.89
16377165--16377200	2	18.0	2	100	0	72	50	0	0	50	1.00
16377240--16377286	2	23.5	2	100	0	94	48	0	0	51	1.00
16383159--16383203	9	5.0	9	91	0	72	33	4	11	51	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16383159--16383203	18	2.5	18	96	0	81	33	4	11	51	1.58
16387067--16387104	20	1.9	19	85	15	51	60	5	2	31	1.33
16387725--16387848	29	4.3	29	66	16	69	24	1	27	46	1.62
16387737--16387790	22	2.5	22	82	11	58	24	1	20	53	1.55
16387792--16387840	14	3.4	14	78	15	55	20	2	30	46	1.62
16387801--16387832	15	2.1	15	94	0	55	18	3	28	50	1.62
16387859--16387921	16	3.8	16	87	6	90	17	0	31	50	1.46
16387859--16387940	16	5.1	16	80	7	85	21	0	30	47	1.51
16391138--16391292	29	5.3	29	70	13	86	23	0	27	48	1.56
16391156--16391226	22	3.3	21	75	14	65	22	0	30	46	1.52
16391142--16391356	86	2.5	87	84	3	256	20	1	31	46	1.60
16391202--16391473	29	9.4	29	76	5	219	18	1	31	48	1.56
16391142--16391392	86	2.9	85	81	7	238	20	1	32	46	1.58
16391620--16391690	22	3.1	22	77	16	74	32	5	1	60	1.29
16393142--16393184	17	2.5	17	88	7	61	4	2	13	79	1.00
16395093--16395134	2	21.0	2	100	0	84	50	0	0	50	1.00
16396753--16396803	25	2.0	26	85	11	70	50	0	1	47	1.12
16397001--16397041	3	13.7	3	100	0	82	65	0	0	34	0.93
16398100--16398157	3	19.3	3	77	7	55	63	1	5	29	1.25
16398351--16398403	3	17.7	3	100	0	106	66	0	0	33	0.92
16398587--16398626	21	1.9	21	89	0	62	52	15	0	32	1.43
16398625--16398726	16	6.7	16	76	17	94	45	34	0	19	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16398611--16398725	30	3.8	30	82	11	137	46	33	0	20	1.57
16407701--16407725	2	12.5	2	100	0	50	48	0	0	52	1.00
16413287--16413329	21	2.0	21	95	0	77	37	37	6	18	1.78
16424202--16424253	17	3.1	16	81	8	68	48	0	0	51	1.00
16424246--16424312	29	2.4	28	87	5	91	67	2	1	28	1.14
16424246--16424313	28	2.4	29	79	13	79	67	2	1	27	1.13
16424265--16424319	27	2.0	29	85	7	78	69	0	1	29	0.99
16425114--16425158	3	15.0	3	100	0	90	66	0	0	33	0.92
16427247--16427278	17	1.9	17	93	6	57	0	18	0	81	0.70
16430157--16430204	23	2.1	22	84	3	60	72	2	2	22	1.05
16430929--16430966	17	2.3	16	86	13	51	78	5	5	10	1.06
16435496--16435527	14	2.3	14	100	0	64	25	9	31	34	1.87
16442443--16442476	15	2.2	16	89	5	52	11	2	14	70	1.27
16442477--16442522	9	4.8	9	87	12	65	65	0	0	34	0.93
16442964--16442999	17	2.1	17	100	0	72	83	0	8	8	0.82
16445295--16445319	2	12.5	2	100	0	50	48	0	0	52	1.00
16449182--16449222	22	1.9	21	85	14	57	53	2	12	31	1.51
16450075--16450109	14	2.6	14	90	4	54	45	0	0	54	0.99
16453959--16453986	1	28.0	1	100	0	56	0	0	0	100	0.00
16454936--16454965	14	2.1	15	93	6	53	60	0	0	40	0.97
16459363--16459407	23	2.0	24	86	8	67	51	0	6	42	1.28
16461165--16461194	15	2.0	15	93	0	51	16	13	26	43	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16461434--16461466	2	16.5	2	93	0	57	48	0	0	51	1.00
16468665--16468788	62	2.0	62	85	0	167	45	8	6	38	1.61
16473333--16473447	51	2.3	51	87	0	158	17	21	20	40	1.92
16479467--16479496	15	2.1	14	93	6	51	0	10	0	90	0.47
16480288--16480344	29	2.0	29	100	0	114	45	17	7	29	1.75
16484394--16484441	16	3.1	16	72	27	50	39	0	0	60	0.97
16484333--16484451	31	4.1	30	80	11	140	41	3	0	54	1.23
16484336--16484451	60	2.0	58	83	10	146	41	3	0	54	1.23
16489420--16489460	3	13.7	3	100	0	82	34	0	0	65	0.93
16493788--16493956	83	2.0	83	95	0	302	36	9	19	34	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105