genome.fa.s135.2.7.7.80.10.50.1000.95.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  95  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16866438--16866515	40	2.0	40	94	0	138	34	3	20	41	1.71
16866500--16866533	2	17.0	2	93	0	59	52	0	0	47	1.00
16867219--16867247	15	1.9	15	100	0	58	51	0	0	48	1.00
16867411--16867442	15	2.1	15	94	0	55	46	15	6	31	1.71
16868821--16868865	23	2.0	23	86	0	63	42	8	13	35	1.75
16868964--16869085	52	2.3	53	82	1	147	36	13	15	34	1.86
16869061--16869109	16	2.9	16	78	6	53	36	14	14	34	1.86
16869293--16869359	35	1.9	35	81	6	82	40	8	14	35	1.78
16884847--16884876	12	2.5	12	94	0	51	26	10	33	30	1.89
16887757--16888052	116	2.5	116	82	3	308	16	22	17	44	1.87
16888366--16888421	26	2.2	26	86	0	76	19	30	19	30	1.97
16889044--16889077	17	2.0	17	100	0	68	0	0	17	82	0.67
16889587--16889616	8	3.8	8	95	0	51	90	6	3	0	0.56
16890525--16890565	12	3.3	13	80	10	50	63	2	0	34	1.08
16890516--16890570	11	4.7	12	76	8	51	60	5	0	34	1.20
16890502--16890570	23	3.0	24	81	10	81	59	4	1	34	1.26
16890504--16890573	24	3.0	24	78	15	76	57	4	1	37	1.27
16897296--16897365	34	2.1	34	97	0	131	40	18	10	31	1.84
16906418--16906472	15	3.7	15	92	2	94	49	0	0	50	1.00
16906418--16906478	29	2.1	29	84	6	79	52	0	0	47	1.00
16906545--16906585	19	2.3	17	87	8	55	46	14	0	39	1.45
16906655--16906685	15	2.1	15	93	0	53	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16912266--16912310	20	2.2	20	84	8	54	57	2	0	40	1.11
16912263--16912312	21	2.3	22	80	10	59	58	2	0	40	1.10
16914224--16914249	5	5.2	5	100	0	52	80	0	0	19	0.71
16918932--16918987	12	4.6	12	77	4	67	48	0	0	51	1.00
16918932--16918984	25	2.2	25	89	3	81	47	0	0	52	1.00
16927778--16927843	33	2.0	33	93	0	114	19	34	12	33	1.89
16930072--16930105	2	17.5	2	93	6	61	50	0	0	50	1.00
16933950--16933974	2	12.5	2	100	0	50	48	0	0	52	1.00
16935038--16935076	11	3.4	11	80	13	51	28	0	0	71	0.86
16944914--16944968	20	2.8	20	73	13	60	47	0	0	52	1.00
16944911--16944981	18	3.7	18	74	10	61	49	0	0	50	1.00
16944906--16944973	20	3.4	20	68	13	59	44	0	0	55	0.99
16945026--16945066	20	2.0	20	85	4	55	39	0	0	60	0.96
16945245--16945282	19	2.0	19	94	0	67	28	21	28	21	1.98
16945413--16945488	29	2.5	31	81	14	88	52	2	1	43	1.23
16945440--16945487	15	3.0	16	79	14	55	52	2	0	45	1.12
16948041--16948119	39	2.0	39	100	0	158	37	7	12	41	1.72
16953950--16953979	14	2.1	14	93	0	51	80	3	3	13	0.97
16954391--16954433	19	2.3	19	91	0	68	44	0	0	55	0.99
16955917--16955958	9	4.1	10	80	17	50	28	0	0	71	0.86
16955915--16955996	12	7.3	12	72	12	52	32	0	0	67	0.91
16962589--16962635	13	3.6	13	77	8	51	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16962896--16962930	2	17.5	2	100	0	70	48	0	0	51	1.00
16964803--16964837	16	2.2	16	95	5	63	42	5	25	25	1.77
16976640--16976668	11	2.7	11	94	5	51	55	0	0	44	0.99
16982667--16982723	21	2.6	21	73	13	53	47	0	0	52	1.00
16983238--16983288	18	2.8	19	80	16	63	47	0	0	52	1.00
16990186--16990224	3	13.0	3	86	0	51	38	2	58	0	1.12
17001200--17001227	14	2.0	14	100	0	56	14	21	21	42	1.88
17002945--17002988	11	3.8	11	82	11	52	56	0	0	43	0.99
17002938--17002985	24	2.0	24	87	0	69	56	0	0	43	0.99
17005254--17005283	13	2.3	13	94	0	51	33	0	0	66	0.92
17005438--17005507	6	11.2	6	71	19	54	35	0	0	64	0.94
17005441--17005501	18	3.3	18	77	18	63	34	0	0	65	0.93
17008799--17008856	9	6.3	9	76	9	55	17	1	3	77	0.99
17015559--17015601	19	2.3	19	88	8	61	76	0	16	6	0.99
17017377--17017687	123	2.5	122	82	7	333	25	14	16	43	1.85
17017391--17017713	41	7.9	41	81	5	271	24	14	17	43	1.86
17018363--17018399	19	1.9	19	88	0	56	24	8	16	51	1.71
17018484--17018517	17	2.0	17	88	0	50	64	0	35	0	0.94
17018775--17018838	9	7.2	9	75	10	60	18	3	3	75	1.08
17024270--17024306	16	2.3	16	90	0	56	32	0	8	59	1.27
17025101--17025131	14	2.1	15	94	5	55	48	0	0	51	1.00
17025624--17025649	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17025820--17025850	2	15.5	2	93	0	53	48	0	3	48	1.17
17028361--17028402	22	1.9	22	100	0	84	38	11	9	40	1.75
17034625--17034660	2	18.5	2	94	5	65	52	0	0	47	1.00
17034625--17034658	17	2.0	17	100	0	68	52	0	0	47	1.00
17034625--17034661	19	1.9	19	100	0	74	54	0	0	45	1.00
17038728--17038799	36	2.0	36	97	0	135	25	20	19	34	1.96
17041840--17041866	2	13.5	2	100	0	54	51	0	0	48	1.00
17042125--17042186	24	2.5	24	74	12	63	29	1	22	46	1.61
17048260--17049045	434	1.8	437	78	5	908	36	9	6	46	1.64
17053110--17053256	30	4.9	30	86	3	197	29	29	11	29	1.92
17064598--17064639	22	1.9	22	100	0	84	42	4	16	35	1.69
17066881--17066907	3	9.0	3	100	0	54	33	0	0	66	0.92
17068750--17068802	24	2.2	25	83	10	65	50	1	3	43	1.30
17068752--17068844	39	2.3	40	78	8	102	48	1	2	48	1.20
17069178--17069222	24	1.9	23	86	13	65	60	2	0	37	1.09
17071785--17071823	12	3.3	12	86	13	55	17	0	7	74	1.05
17072022--17072057	15	2.3	15	90	4	54	86	0	2	11	0.68
17072242--17072363	55	2.2	54	89	5	190	59	7	10	22	1.56
17076263--17076312	24	2.2	22	82	7	55	80	0	12	8	0.92
17076276--17076319	19	2.3	19	84	0	61	84	0	6	9	0.79
17077015--17077044	9	3.3	9	100	0	60	66	0	13	20	1.24
17077352--17077623	21	11.8	24	68	19	145	37	9	14	38	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17077352--17077623	46	5.9	47	80	5	288	37	9	14	38	1.79
17077355--17077623	92	2.9	92	83	1	333	38	9	14	37	1.78
17077354--17077622	138	1.9	138	82	4	328	37	9	14	38	1.78
17077709--17077747	20	2.0	20	84	0	51	35	15	20	28	1.93
17077730--17077812	43	2.0	43	85	7	116	37	12	16	33	1.86
17078159--17078616	83	5.6	83	75	10	329	25	12	14	48	1.78
17078159--17078605	41	10.9	41	77	7	300	25	12	13	48	1.78
17078465--17078605	43	3.3	42	80	8	144	23	13	15	47	1.81
17079727--17079800	26	2.9	25	80	7	78	41	0	9	48	1.35
17079877--17079905	8	3.6	8	100	0	58	89	0	0	10	0.48
17080093--17080285	49	3.8	48	69	16	122	50	7	12	30	1.67
17080817--17080845	13	2.1	14	93	6	51	41	0	0	58	0.98
17081805--17081856	27	1.9	27	92	0	86	44	0	0	55	0.99
17085379--17085431	23	2.3	23	93	0	88	39	1	1	56	1.21
17088713--17088752	18	2.2	18	86	8	55	30	20	7	42	1.79
17093656--17093693	18	2.1	18	85	9	51	55	2	10	31	1.48
17094203--17094232	12	2.6	12	94	5	53	50	0	0	50	1.00
17095993--17096026	11	3.1	11	91	0	50	47	2	0	50	1.16
17096062--17096102	19	2.2	19	86	4	57	34	4	0	60	1.18
17096178--17096256	5	15.2	5	70	12	52	53	2	1	43	1.22
17096178--17096256	11	7.6	10	71	12	52	53	2	1	43	1.22
17096201--17096259	22	2.7	22	82	10	75	49	1	1	47	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17096726--17096780	30	1.9	30	85	7	78	45	0	0	54	0.99
17105476--17105534	19	3.1	21	75	18	58	40	0	1	57	1.09
17106507--17106545	3	13.3	3	94	5	71	66	0	0	33	0.92
17110776--17110833	23	2.6	21	73	13	53	67	15	1	15	1.32
17110956--17111218	130	2.0	130	96	0	481	44	14	9	31	1.76
17113052--17113089	12	3.2	12	88	7	51	21	50	2	26	1.62
17113903--17113944	4	11.0	4	80	19	54	47	0	0	52	1.00
17113903--17113945	12	3.8	11	85	14	61	46	0	0	53	1.00
17114237--17114278	21	2.0	20	86	13	59	35	2	9	52	1.47
17114779--17114845	21	3.4	21	86	8	79	47	0	14	37	1.45

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105