genome.fa.s135.2.7.7.80.10.50.1000.25.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  25  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5035178--5035234	18	3.2	17	80	9	60	36	8	1	52	1.43
5035194--5035222	9	3.2	9	100	0	58	44	10	0	44	1.38
5035312--5035415	27	3.9	27	74	14	90	36	2	1	58	1.24
5035409--5035456	21	2.3	20	76	13	53	39	0	10	50	1.37
5035485--5035527	9	4.6	9	77	11	50	37	0	4	58	1.19
5035482--5035527	18	2.4	18	89	7	65	36	0	6	56	1.25
5036143--5036184	22	1.9	22	95	0	75	52	19	2	26	1.58
5036308--5036335	2	14.0	2	100	0	56	50	0	0	50	1.00
5036879--5036933	16	3.8	15	73	22	55	78	12	0	9	0.97
5047686--5047736	19	2.6	19	87	6	66	56	1	1	39	1.22
5056556--5056591	15	2.3	16	90	4	56	47	11	11	30	1.74
5057078--5057107	5	6.0	5	100	0	60	80	0	0	20	0.72
5063431--5063463	2	16.5	2	100	0	66	0	48	0	51	1.00
5063529--5063661	66	2.0	66	98	0	257	33	9	22	34	1.87
5065329--5065353	2	12.5	2	100	0	50	52	0	0	48	1.00
5065809--5065850	22	1.9	22	85	0	57	47	11	2	38	1.53
5065788--5065856	29	2.4	29	81	9	79	52	13	2	31	1.55
5065822--5065938	61	1.9	61	84	8	159	51	11	5	32	1.59
5069099--5069138	17	2.4	17	86	0	62	22	5	0	72	1.04
5069453--5069514	3	20.7	3	100	0	124	33	0	0	66	0.92
5069675--5069730	10	5.8	9	76	19	51	73	5	1	19	1.12
5069700--5069749	19	2.8	19	88	8	70	76	6	4	14	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5070796--5070826	14	2.2	14	94	0	53	0	16	12	70	1.16
5078769--5078802	17	1.9	17	88	5	50	67	2	5	23	1.26
5079521--5081298	704	2.5	704	77	8	1543	51	6	10	32	1.61
5079640--5081412	936	1.9	937	79	7	1990	51	5	10	32	1.60
5079321--5081408	233	8.9	232	75	10	1293	51	6	10	31	1.61
5081687--5082486	234	3.4	230	77	8	670	51	6	10	31	1.61
5083441--5083482	18	2.3	18	83	0	57	28	0	0	71	0.86
5086930--5086962	12	2.6	13	90	4	50	54	6	3	36	1.41
5087371--5087395	11	2.3	11	100	0	50	32	0	0	68	0.90
5087768--5087810	5	8.6	5	100	0	86	0	58	0	41	0.98
5095677--5095719	13	3.2	13	81	12	50	37	0	2	60	1.10
5096115--5096233	62	1.9	61	84	5	159	42	11	8	37	1.72
5096657--5096890	62	3.8	61	78	6	206	45	10	6	38	1.64
5096657--5096890	123	1.9	124	81	6	287	45	10	6	38	1.64
5096982--5097049	33	2.1	33	86	5	93	44	13	8	33	1.74
5097689--5097741	22	2.4	22	93	6	90	49	0	0	50	1.00
5098573--5098939	183	2.0	182	90	2	585	37	9	11	42	1.73
5102288--5102421	71	1.9	71	83	4	173	23	14	17	44	1.85
5103136--5103262	44	2.9	45	80	8	136	40	14	7	38	1.73
5103232--5103304	22	3.4	21	75	9	67	32	6	6	53	1.54
5103353--5103417	33	2.0	33	84	6	87	32	16	7	43	1.77
5103608--5103708	49	2.1	49	81	3	116	35	16	9	37	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5105298--5105335	17	2.2	17	95	0	67	28	5	2	63	1.30
5105761--5105800	20	2.0	19	85	9	53	27	2	5	65	1.27
5106516--5106570	5	10.8	5	75	14	51	36	0	3	60	1.15
5106536--5106584	19	2.7	18	84	6	62	36	0	0	63	0.95
5106923--5106958	15	2.5	14	86	8	54	52	0	0	47	1.00
5109241--5109306	31	2.0	34	82	14	84	30	6	4	59	1.42
5109241--5109305	32	2.0	34	82	11	82	30	6	4	58	1.43
5110328--5110364	17	2.2	18	85	9	51	45	10	10	32	1.74
5110711--5110754	17	2.6	17	78	10	54	52	0	2	45	1.13
5115392--5115416	11	2.3	11	100	0	50	36	8	8	48	1.62
5130413--5130451	21	1.9	21	89	5	62	35	0	2	61	1.10
5131498--5131538	10	4.3	9	82	11	55	53	2	0	43	1.13
5131505--5131549	20	2.2	20	84	7	56	48	6	0	44	1.29
5131688--5131716	11	2.5	12	88	11	51	31	0	0	68	0.89
5132045--5132092	19	2.5	19	81	18	64	41	0	2	56	1.11
5132586--5132617	17	1.9	17	93	6	57	59	0	3	37	1.13
5143294--5143344	18	2.8	18	80	8	59	64	3	1	29	1.22
5146771--5146844	38	2.0	37	86	2	103	24	5	17	52	1.65
5147576--5147737	81	2.0	81	98	0	315	29	10	12	47	1.74
5154355--5154512	79	2.0	79	100	0	316	30	13	18	36	1.90
5156165--5156203	8	5.1	8	87	12	64	66	0	0	33	0.92
5156165--5156203	14	2.6	16	92	8	64	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5156165--5156211	16	3.1	15	84	12	60	68	0	0	31	0.90
5156170--5156211	22	1.9	22	85	9	59	69	0	0	30	0.89
5156165--5156220	14	3.9	15	84	13	57	66	0	0	33	0.92
5159038--5159077	14	2.7	15	84	3	55	10	22	0	67	1.20
5160295--5160481	66	2.8	66	81	10	231	19	15	14	50	1.78
5164965--5165020	24	2.3	24	84	6	69	60	1	0	37	1.07
5164983--5165013	16	1.9	16	93	0	53	64	0	0	35	0.94
5164981--5165020	12	3.3	12	85	0	53	60	0	0	40	0.97
5167908--5167961	14	3.6	16	80	14	62	53	0	0	46	1.00
5167925--5167961	8	4.6	8	86	0	56	56	0	0	43	0.99
5167927--5167999	12	5.8	12	76	12	67	63	0	0	36	0.95
5167952--5168011	23	2.7	22	75	15	61	63	0	0	36	0.95
5168520--5168560	18	2.3	18	91	0	64	65	0	2	31	1.05
5170140--5170175	19	1.9	19	94	5	65	2	16	13	66	1.36
5175819--5175873	24	2.4	23	82	8	67	41	10	9	38	1.72
5182158--5182214	3	19.7	3	92	7	100	64	0	0	35	0.93
5182160--5182214	20	2.8	20	100	0	110	65	0	0	34	0.93
5183696--5183756	32	1.9	32	83	3	79	54	4	3	37	1.39
5185316--5185366	26	2.0	24	81	7	57	37	5	5	50	1.51
5185356--5185417	22	2.7	23	80	7	63	45	3	6	45	1.45
5186869--5186910	22	1.9	22	85	0	57	26	19	23	30	1.98
5189580--5189616	12	3.3	12	82	17	53	62	5	0	32	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5191926--5192014	44	2.0	44	93	0	151	38	17	13	30	1.89
5194843--5194895	23	2.5	22	85	14	76	50	0	0	49	1.00
5198321--5198360	15	2.7	15	96	0	71	30	10	7	52	1.62
5198322--5198364	8	5.6	8	78	10	54	25	9	9	55	1.61
5199676--5199725	22	2.3	22	92	0	82	32	6	16	46	1.71
5201766--5201814	9	5.4	9	80	0	62	75	2	2	20	1.00
5201769--5201830	31	2.0	31	84	6	81	74	1	3	20	1.05
5202083--5202139	30	1.9	30	88	0	87	0	40	0	59	0.97
5202272--5202317	22	2.0	23	83	4	58	60	15	4	19	1.51
5202597--5202692	20	4.7	21	73	15	60	65	2	7	25	1.29
5202597--5202653	21	2.7	23	81	13	59	64	1	8	24	1.31
5202632--5202684	26	2.0	26	82	7	63	67	1	9	20	1.28
5202962--5203048	44	2.0	43	84	2	111	42	22	13	20	1.88
5202966--5203354	41	9.4	41	76	5	286	38	19	16	25	1.92
5203204--5203305	42	2.5	40	82	7	125	40	20	14	24	1.90
5204990--5205022	13	2.4	14	90	10	59	6	15	0	78	0.93
5204997--5205052	19	3.1	19	80	14	73	3	12	0	83	0.76
5205050--5205084	7	5.0	7	100	0	70	14	42	0	42	1.45
5205046--5205095	21	2.4	20	70	9	55	12	32	0	56	1.36
5212967--5213003	12	3.3	12	82	17	53	62	5	0	32	1.18
5215319--5215407	44	2.0	44	93	0	151	38	17	13	30	1.89
5221688--5221727	15	2.7	15	92	0	62	32	10	7	50	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5223051--5223100	22	2.3	22	92	0	82	32	6	16	46	1.71
5225912--5226037	21	5.8	21	71	22	75	65	0	6	26	1.21
5225947--5225999	26	2.0	26	82	7	63	67	0	9	22	1.19
5225955--5226034	23	3.6	22	77	11	74	66	0	6	27	1.16
5226339--5226665	82	4.0	82	77	4	329	38	20	16	24	1.92
5226367--5226661	163	1.8	163	84	2	405	40	19	15	24	1.90
5226339--5226665	41	8.0	41	76	5	288	38	20	16	24	1.92
5227125--5227165	22	1.9	21	95	5	73	34	19	9	36	1.85
5235240--5235264	11	2.3	11	100	0	50	60	0	0	40	0.97
5235384--5235431	24	2.0	25	91	4	80	29	0	10	60	1.30

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105