genome.fa.s135.2.7.7.80.10.50.1000.56.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  56  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10616559--10616619	16	3.9	15	78	18	54	70	0	8	21	1.13
10616579--10616632	23	2.4	22	76	14	56	70	0	9	20	1.14
10616559--10616646	18	5.2	17	72	20	60	69	0	12	18	1.19
10616855--10616954	51	2.0	51	82	7	123	44	17	14	25	1.85
10617511--10617575	3	23.3	3	73	20	61	67	0	3	29	1.05
10620030--10620121	31	2.9	32	85	3	125	35	11	10	41	1.77
10620195--10620238	13	3.4	13	84	6	54	38	18	2	40	1.63
10620854--10620940	14	6.2	14	70	16	56	48	2	3	45	1.32
10621032--10621113	31	2.6	31	82	0	92	36	7	14	41	1.74
10622480--10622521	21	2.0	21	100	0	84	33	23	0	42	1.55
10627976--10628052	38	2.0	38	97	0	145	25	9	33	31	1.87
10630004--10630086	19	4.6	18	73	20	66	19	2	3	74	1.07
10630005--10630094	25	3.7	24	84	10	94	17	3	4	74	1.12
10630005--10630086	6	13.5	6	72	19	55	18	2	3	75	1.06
10630005--10630068	13	5.3	12	77	19	62	17	1	4	76	1.03
10630993--10631082	10	8.0	11	72	15	62	15	3	5	75	1.12
10630992--10631081	7	12.6	7	76	19	62	14	3	5	76	1.09
10630992--10631082	6	14.0	6	74	21	53	15	3	5	75	1.11
10631198--10631305	36	3.1	34	79	8	105	26	4	13	54	1.59
10640123--10640174	27	2.0	26	84	3	68	19	7	9	63	1.48
10641102--10641138	13	2.6	15	83	12	51	81	0	18	0	0.70
10641106--10641138	15	2.2	16	89	10	52	81	0	18	0	0.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10646982--10647028	17	2.6	18	80	16	53	8	0	44	46	1.33
10647044--10647119	13	5.9	13	69	6	57	14	1	30	53	1.49
10647046--10647144	26	3.9	25	81	13	114	16	1	29	53	1.49
10647192--10647223	14	2.1	16	88	11	50	18	6	25	50	1.70
10650398--10650441	23	1.9	23	85	0	61	29	18	6	45	1.75
10650558--10650625	31	2.2	32	94	5	129	51	2	22	23	1.61
10651043--10651067	11	2.3	11	100	0	50	36	0	0	64	0.94
10651040--10651070	14	2.3	13	94	5	53	35	0	0	64	0.94
10651088--10651148	27	2.5	23	73	19	59	26	4	1	67	1.20
10651094--10651146	27	2.0	27	84	0	70	28	3	1	66	1.20
10651125--10651160	18	2.1	18	89	5	56	19	5	0	75	1.00
10651903--10651951	25	1.9	25	87	4	71	14	4	4	77	1.06
10651929--10652044	17	6.6	17	69	13	60	18	3	3	75	1.09
10651986--10652054	26	2.6	25	70	20	52	14	4	1	79	0.95
10652071--10652411	58	5.9	58	88	4	483	44	7	13	34	1.72
10656332--10656386	21	2.8	19	81	10	65	72	0	20	7	1.07
10657444--10657502	22	2.7	23	84	7	77	38	8	18	33	1.81
10657686--10657768	43	1.9	44	85	9	118	38	10	15	34	1.83
10658035--10658247	41	5.1	41	90	1	309	24	17	22	34	1.96
10658254--10658301	1	48.0	1	82	0	60	91	6	0	2	0.48
10658257--10658301	10	4.7	10	83	10	67	91	6	0	2	0.50
10658254--10658302	18	2.8	18	93	3	82	89	6	0	4	0.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10658602--10658644	14	2.9	14	86	13	52	34	0	2	62	1.08
10658489--10658656	67	2.5	65	75	15	157	27	1	4	66	1.22
10659280--10659322	16	2.6	17	85	10	63	69	0	30	0	0.88
10659613--10659730	18	6.6	18	70	14	66	17	3	4	74	1.12
10659659--10659740	6	13.7	6	72	18	55	14	4	2	78	1.03
10659659--10659740	18	4.6	17	83	6	83	14	4	2	78	1.03
10659667--10659733	11	6.6	10	75	13	57	14	2	2	79	0.98
10659714--10659745	16	2.0	17	88	11	50	18	6	0	75	1.01
10659677--10659740	26	2.3	29	84	7	80	14	4	3	78	1.04
10659761--10660216	58	7.8	56	85	7	554	44	8	13	34	1.73
10659751--10660216	117	4.0	118	87	5	676	44	8	12	33	1.73
10660774--10660857	43	1.9	44	88	7	127	32	15	14	38	1.87
10661168--10661212	19	2.4	19	85	10	58	15	0	6	77	0.96
10662472--10662496	3	8.3	3	100	0	50	32	0	0	68	0.90
10662676--10662707	3	10.7	3	100	0	64	31	0	0	68	0.90
10664915--10664947	16	2.1	16	94	0	57	39	3	18	39	1.66
10669565--10669601	16	2.3	16	95	0	65	37	2	18	40	1.65
10671369--10671475	7	15.4	7	73	18	66	31	3	0	64	1.11
10671397--10671471	3	24.7	3	76	15	66	32	4	0	64	1.12
10671398--10671471	23	3.2	22	76	17	69	32	4	0	63	1.13
10671801--10671872	5	14.8	5	84	9	51	0	2	16	80	0.83
10671801--10671875	14	5.5	14	76	6	82	0	2	16	81	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10671839--10671880	21	2.0	21	90	0	66	0	7	7	85	0.73
10672105--10672439	34	10.1	34	72	13	177	31	14	17	37	1.90
10672119--10672406	33	8.8	32	70	15	135	30	13	18	36	1.90
10673486--10673562	9	8.9	8	72	19	57	5	18	0	76	0.96
10673499--10673545	19	2.6	18	83	12	60	6	19	0	74	1.03
10673518--10673563	11	4.4	11	78	10	51	4	19	0	76	0.96
10674074--10674108	14	2.4	14	90	9	52	0	11	0	88	0.51
10674074--10674106	12	2.6	13	90	4	50	0	12	0	87	0.53
10679895--10679984	6	13.4	7	79	13	68	34	2	1	62	1.15
10679948--10679986	3	13.0	3	100	0	78	33	0	0	66	0.92
10680870--10680912	18	2.4	18	81	11	54	4	25	0	69	1.07
10681630--10681685	7	7.9	7	76	11	51	19	1	1	76	0.96
10681703--10681767	23	3.0	22	79	18	73	26	1	1	70	1.04
10681710--10681765	18	3.1	18	82	10	69	26	1	1	69	1.08
10681706--10681767	22	2.8	24	80	11	78	25	1	1	70	1.05
10681734--10681791	23	2.5	23	81	13	66	32	1	0	65	1.03
10684324--10684348	1	25.0	1	100	0	50	0	100	0	0	0.00
10685511--10685547	16	2.3	16	95	0	65	37	2	18	40	1.65
10687380--10687417	19	2.0	20	85	15	53	31	2	0	65	1.06
10687401--10687474	3	24.7	3	76	17	66	32	4	0	63	1.13
10687402--10687474	23	3.2	22	76	19	69	32	4	0	63	1.14
10687802--10687874	5	14.8	5	84	8	51	0	2	16	80	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10687803--10687877	14	5.5	14	76	6	82	0	2	16	81	0.80
10687841--10687882	21	2.0	21	90	0	66	0	7	7	85	0.73
10687802--10687877	19	4.2	18	70	12	66	0	2	15	81	0.80
10688123--10688580	67	6.9	67	70	12	232	31	14	17	36	1.91
10688138--10688623	34	14.7	33	68	12	153	30	14	18	36	1.91
10688315--10688448	68	2.0	67	86	4	189	30	14	17	38	1.89
10688327--10688477	68	2.2	67	82	1	176	32	14	15	37	1.88
10689520--10689596	9	8.9	8	72	19	57	5	18	0	76	0.96
10689533--10689579	19	2.6	18	83	12	60	6	19	0	74	1.03
10689552--10689597	11	4.4	11	78	10	51	4	19	0	76	0.96
10695941--10696023	6	12.3	7	79	13	61	33	2	1	62	1.16
10695994--10696023	3	10.0	3	100	0	60	33	0	0	66	0.92
10696865--10696899	10	3.4	10	84	7	52	0	17	2	80	0.84
10696909--10696948	18	2.3	18	86	4	55	2	22	0	75	0.93
10697674--10697730	7	7.9	7	80	7	60	19	1	1	77	0.95
10697748--10697812	23	3.0	22	79	18	73	26	1	1	70	1.04
10697755--10697810	18	3.1	18	82	10	69	26	1	1	69	1.08
10697751--10697812	22	2.8	24	80	11	78	25	1	1	70	1.05
10697779--10697836	23	2.5	23	81	13	66	32	1	0	65	1.03
10699075--10699167	33	2.8	34	72	21	88	30	5	13	50	1.64
10699136--10699193	29	2.0	29	83	6	73	22	8	15	53	1.69
10706337--10706392	29	1.9	29	88	0	85	39	10	0	50	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10706654--10706705	19	2.8	19	85	2	79	46	0	3	50	1.20
10707774--10707824	19	2.6	19	87	3	75	41	45	7	5	1.57
10707827--10707912	6	13.7	6	75	7	55	43	38	1	17	1.57
10707823--10708171	7	53.1	7	73	13	190	42	35	2	20	1.64
10707823--10708172	19	18.5	19	71	14	183	42	35	2	20	1.64
10707882--10708040	68	2.4	68	82	7	202	42	32	3	22	1.69
10707894--10708172	26	10.6	27	76	9	125	41	34	2	21	1.65
10707892--10708037	75	2.0	73	85	5	195	41	32	3	23	1.71
10707820--10708172	13	26.4	14	68	18	91	42	35	1	20	1.63
10707909--10708089	68	2.7	66	80	7	184	43	31	3	22	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105