genome.fa.s135.2.7.7.80.10.50.1000.24.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  24  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4850609--4850637	9	3.3	9	95	4	51	68	0	0	31	0.89
4850614--4850751	39	3.5	39	74	10	120	65	5	0	28	1.21
4850782--4850823	20	2.1	20	86	8	59	38	7	0	54	1.28
4850779--4850823	11	4.3	11	76	21	51	37	6	0	55	1.26
4851029--4851070	17	2.5	17	88	7	59	38	2	0	59	1.10
4851194--4851257	10	6.3	10	73	10	58	29	0	4	65	1.13
4851146--4851235	19	4.8	19	76	4	76	37	1	1	60	1.12
4851211--4851235	12	2.1	12	100	0	50	24	0	0	76	0.80
4851194--4851260	31	2.2	31	86	5	91	31	0	4	64	1.14
4851147--4851223	10	8.6	9	71	14	52	40	1	1	57	1.15
4851194--4851256	21	3.2	19	78	12	63	30	0	4	65	1.13
4852730--4852777	16	2.9	17	85	14	57	35	2	8	54	1.42
4852789--4852836	23	2.1	23	84	7	62	43	0	4	52	1.20
4854946--4854983	20	1.9	20	88	0	58	31	21	10	36	1.87
4871865--4871945	15	5.4	15	71	19	62	29	2	0	67	1.03
4871860--4871942	36	2.4	35	77	18	93	30	2	0	67	1.03
4871913--4871963	23	2.2	24	86	10	79	23	5	0	70	1.09
4871935--4871973	16	2.4	16	82	4	51	25	7	0	66	1.18
4872387--4872459	27	2.8	26	78	15	71	15	8	1	75	1.10
4872454--4872644	58	3.3	57	82	10	237	43	6	10	39	1.64
4872455--4872644	59	3.3	59	84	7	246	43	6	10	39	1.64
4872551--4872722	91	1.9	91	96	0	317	43	5	11	38	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4872642--4873071	59	7.4	60	79	9	462	43	6	13	37	1.69
4872493--4872791	150	2.0	146	87	6	433	43	6	12	37	1.69
4872642--4873070	115	3.7	114	86	5	549	43	6	13	37	1.69
4876925--4876983	26	2.2	26	88	8	84	79	0	13	6	0.92
4876930--4876974	12	3.5	13	79	11	56	77	0	15	6	0.96
4878684--4879160	42	11.4	42	86	5	585	23	15	22	38	1.92
4878684--4879115	83	5.2	83	90	3	622	24	15	21	38	1.92
4878657--4879160	124	4.0	124	85	4	597	23	15	22	38	1.92
4879437--4879485	23	2.1	24	84	3	64	24	4	2	69	1.17
4879392--4879533	17	8.9	16	73	11	82	23	4	2	69	1.19
4879449--4879506	27	2.2	26	90	9	91	22	5	0	72	1.04
4879895--4879930	3	12.0	3	88	11	56	33	2	0	63	1.08
4879947--4879999	6	8.5	6	76	15	54	15	5	0	79	0.91
4879942--4880007	27	2.6	25	83	9	87	16	6	0	77	0.96
4880025--4880355	58	5.7	58	81	7	384	45	6	11	36	1.67
4883297--4883353	22	2.6	22	74	0	69	40	10	12	36	1.77
4884095--4884130	2	18.5	2	94	5	65	50	0	0	50	1.00
4884130--4884158	2	14.5	2	100	0	58	51	0	48	0	1.00
4891294--4891337	21	2.2	20	84	12	54	63	2	2	31	1.19
4891722--4891760	15	2.6	15	83	0	51	64	0	2	33	1.08
4891724--4891779	14	4.1	13	79	11	51	62	0	1	35	1.06
4894633--4894686	27	2.0	27	88	0	81	9	24	18	48	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4896859--4896904	18	2.5	20	79	13	62	39	0	2	58	1.10
4896966--4897004	17	2.3	17	90	0	60	28	2	0	69	1.02
4897116--4897171	19	2.8	20	74	17	62	41	7	0	51	1.29
4897373--4897428	19	3.0	20	74	10	64	33	5	0	60	1.19
4898099--4898201	19	5.2	20	71	16	72	58	5	0	34	1.29
4898099--4898307	10	21.7	10	66	14	91	60	5	1	33	1.28
4898149--4898299	29	5.2	29	70	18	91	59	5	1	33	1.30
4898187--4898304	9	12.8	9	70	17	64	62	5	1	30	1.26
4898208--4898277	28	2.6	27	79	6	79	64	2	2	30	1.22
4898140--4898305	19	8.8	18	70	15	95	62	5	1	31	1.26
4898218--4898307	9	9.7	9	74	10	74	66	3	1	28	1.14
4899063--4899087	1	25.0	1	100	0	50	0	0	0	100	0.00
4899418--4899490	20	3.7	20	80	5	76	27	2	5	64	1.29
4899456--4899490	10	3.5	10	88	11	54	28	0	0	71	0.86
4907414--4907457	22	2.0	22	95	0	79	43	13	11	31	1.80
4910900--4910934	18	1.9	18	88	0	52	37	25	14	22	1.92
4911109--4911167	25	2.4	25	86	5	77	40	18	27	13	1.88
4911314--4911357	22	2.0	22	95	0	79	43	13	11	31	1.80
4911774--4911833	25	2.5	24	86	7	86	41	15	21	21	1.89
4917699--4917771	34	2.1	34	85	5	94	50	8	5	35	1.55
4917707--4917778	34	2.1	34	87	5	101	44	9	5	40	1.61
4922272--4922296	11	2.3	11	100	0	50	44	8	0	48	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4930140--4930185	3	15.3	3	100	0	92	32	0	0	67	0.91
4936947--4936977	2	15.5	2	93	0	53	48	0	3	48	1.17
4937456--4937501	24	2.0	24	86	4	67	52	6	2	39	1.40
4941263--4941315	24	2.2	24	79	0	61	50	0	9	39	1.35
4941338--4941384	23	2.0	24	88	8	71	51	0	0	48	1.00
4941656--4941707	25	2.0	26	85	10	72	51	1	0	46	1.12
4942597--4942624	2	14.0	2	100	0	56	50	0	0	50	1.00
4943287--4943312	2	13.0	2	100	0	52	50	0	0	50	1.00
4943320--4943344	13	1.9	13	100	0	50	48	0	20	32	1.50
4949524--4949608	30	2.8	30	84	7	102	40	5	1	52	1.33
4949708--4949769	30	2.1	29	82	17	74	51	3	8	37	1.48
4950791--4950836	18	2.5	19	76	16	51	71	2	2	23	1.08
4950843--4950879	13	2.8	13	95	4	65	72	13	0	13	1.11
4950843--4950893	6	7.4	7	85	14	54	74	9	1	13	1.15
4950843--4950901	14	4.3	14	83	10	68	74	8	3	13	1.17
4950798--4950906	6	16.5	6	72	18	51	72	5	3	18	1.19
4950781--4950905	13	9.3	14	70	16	50	72	6	3	17	1.19
4950849--4950887	8	5.4	8	88	11	50	76	10	0	12	1.01
4951948--4952016	33	2.1	33	83	0	84	44	11	13	30	1.78
4951966--4952029	33	1.9	34	87	3	94	43	10	15	29	1.81
4952280--4952410	54	2.4	54	78	6	131	45	16	19	19	1.86
4956334--4956364	15	2.1	15	93	0	53	83	0	9	6	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4959691--4959829	51	2.8	48	82	3	143	41	12	6	39	1.69
4959692--4959838	48	3.0	47	82	5	141	40	13	6	40	1.70
4968972--4969022	4	13.5	4	80	15	56	25	1	0	72	0.95
4968968--4969146	7	25.0	7	68	18	61	34	3	1	61	1.20
4968985--4969146	10	15.8	10	69	15	73	35	3	1	60	1.20
4969024--4969141	24	4.9	25	70	18	79	38	4	1	55	1.29
4969024--4969129	48	2.2	46	83	12	126	38	4	1	54	1.32
4969886--4969929	3	14.7	3	100	0	88	31	0	0	68	0.90
4969975--4970001	5	5.4	5	100	0	54	18	0	0	81	0.69
4970048--4970207	59	2.8	57	85	7	216	43	5	14	36	1.69
4980039--4980063	13	1.9	13	100	0	50	40	4	0	56	1.18
4980351--4980382	12	2.7	12	95	0	55	46	12	0	40	1.42
4980530--4980589	29	2.1	29	93	0	102	38	3	0	58	1.15
4984284--4984330	3	15.7	3	100	0	94	34	0	0	65	0.93
4984875--4984899	2	12.5	2	100	0	50	52	0	0	48	1.00
4988114--4988145	2	16.0	2	100	0	64	0	50	0	50	1.00
4990051--4990168	39	3.0	38	86	4	173	9	32	11	47	1.71
4990392--4990448	30	1.9	30	88	0	87	12	28	22	36	1.90
4995817--4995860	22	2.0	22	95	0	79	31	11	13	43	1.80
4996295--4996336	22	1.9	22	85	9	59	33	7	11	47	1.68
4996920--4996982	25	2.6	24	87	5	74	17	26	19	36	1.94
5000039--5000082	22	2.0	22	91	8	72	36	9	9	45	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5012601--5012667	3	22.3	3	100	0	134	32	0	0	67	0.91
5014727--5014761	18	1.9	18	88	0	52	37	2	2	57	1.29
5022595--5022893	48	6.2	46	75	11	183	55	5	12	26	1.59
5022651--5022890	48	5.0	47	76	11	186	54	5	12	27	1.59
5033043--5033094	12	4.2	12	85	2	59	57	25	1	15	1.48
5033893--5033927	17	2.1	17	89	10	54	31	0	28	40	1.57
5034016--5034095	40	2.0	40	92	0	133	47	18	0	33	1.49
5034518--5034573	27	2.1	27	93	0	94	44	10	3	41	1.56
5035100--5035125	10	2.6	10	100	0	52	30	0	7	61	1.24
5035048--5035159	18	6.2	17	69	13	73	37	3	2	56	1.31

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105