genome.fa.s135.2.7.7.80.10.50.1000.65.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  65  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11475491--11475587	3	31.3	3	78	13	81	69	2	3	25	1.14
11475476--11475547	30	2.3	31	92	4	119	70	0	2	26	1.00
11476337--11476419	18	4.7	18	70	18	66	78	0	16	4	0.92
11476337--11476419	5	14.2	6	74	19	54	78	0	16	4	0.92
11479361--11479704	49	6.9	48	74	13	257	33	12	11	42	1.79
11479354--11479716	98	3.6	99	81	7	378	34	12	11	41	1.79
11479524--11479718	103	1.9	104	84	6	261	36	13	10	38	1.79
11488051--11488118	23	2.9	24	80	8	77	29	7	1	61	1.32
11489690--11489770	18	4.6	18	74	10	69	44	12	4	38	1.64
11489722--11489845	54	2.3	54	81	5	153	38	14	13	33	1.86
11489890--11489984	21	4.5	20	71	8	73	42	18	9	29	1.82
11489901--11489994	21	4.3	22	71	8	57	44	17	8	29	1.78
11489958--11490141	45	4.1	44	71	14	110	37	19	11	31	1.87
11491410--11491478	8	8.5	8	79	7	77	14	14	0	71	1.16
11491409--11491473	25	2.6	25	97	0	121	13	15	0	70	1.16
11491411--11491473	17	3.8	16	79	6	63	14	15	0	69	1.18
11496950--11497069	36	3.3	36	84	2	170	44	19	5	31	1.72
11497219--11497254	15	2.5	15	95	4	65	41	25	5	27	1.77
11505857--11505906	26	1.9	26	83	0	64	52	6	2	40	1.38
11506993--11507038	23	2.0	22	83	4	56	69	0	8	21	1.15
11508006--11508036	2	15.5	2	100	0	62	48	0	0	51	1.00
11508271--11508324	24	2.3	22	79	14	63	44	22	5	27	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11521766--11521794	13	2.3	13	94	5	51	48	0	17	34	1.47
11523527--11523653	40	3.2	39	75	10	123	31	2	29	37	1.70
11529059--11529087	13	2.1	14	93	6	51	0	0	13	86	0.58
11529061--11529105	25	1.9	25	86	13	69	4	0	15	80	0.87
11529832--11529889	27	2.1	27	83	0	71	41	12	20	25	1.87
11529855--11529893	9	4.3	9	83	0	51	43	15	17	23	1.87
11529864--11529899	18	2.0	18	88	0	54	41	19	13	25	1.88
11530967--11531009	14	2.9	14	83	13	52	6	20	0	72	1.08
11532863--11532888	11	2.4	11	100	0	52	26	7	0	65	1.20
11534685--11535038	145	2.4	144	83	4	435	42	13	12	31	1.82
11535523--11535565	10	4.8	9	91	5	54	2	0	9	88	0.60
11535722--11535878	74	2.1	74	85	2	217	36	19	16	27	1.93
11535693--11535878	37	5.0	37	79	7	189	35	18	16	29	1.93
11535882--11535918	3	12.3	3	100	0	74	32	0	0	67	0.91
11536083--11536131	22	2.2	23	78	10	57	46	22	6	24	1.74
11536003--11536124	62	2.0	62	83	0	154	45	15	9	29	1.78
11536171--11536294	63	2.0	63	86	10	175	42	16	12	27	1.85
11537568--11537594	13	2.1	13	100	0	54	14	0	0	85	0.61
11543486--11543532	22	2.1	22	88	0	67	19	19	10	51	1.75
11550506--11551045	145	3.7	145	83	3	579	40	11	14	33	1.82
11556810--11556860	12	4.2	12	78	11	50	68	3	1	25	1.17
11559811--11559838	2	14.0	2	100	0	56	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11562659--11562726	18	3.7	19	67	16	54	54	0	0	45	0.99
11562818--11562877	20	2.9	21	79	13	54	48	1	3	46	1.28
11562800--11562864	23	2.8	24	75	15	64	47	0	1	50	1.10
11563295--11563336	8	5.2	8	82	8	50	59	2	0	38	1.10
11566163--11566189	14	1.9	14	100	0	54	44	7	25	22	1.79
11567139--11567165	3	9.0	3	100	0	54	33	0	0	66	0.92
11568853--11568936	18	4.3	18	68	16	60	14	1	22	61	1.39
11568855--11568934	42	1.9	42	84	5	108	13	1	23	61	1.40
11568853--11568936	9	9.7	9	69	10	50	14	1	22	61	1.39
11576230--11576281	22	2.4	22	75	15	54	48	1	1	48	1.24
11576310--11576352	16	2.7	15	79	10	50	27	4	2	65	1.25
11577046--11577102	23	2.3	25	80	17	66	19	3	7	70	1.26
11577838--11578070	125	1.9	126	81	4	292	39	14	12	33	1.84
11578029--11578132	53	2.0	53	86	5	149	29	13	18	38	1.89
11582288--11582630	175	2.0	175	87	2	501	40	12	12	34	1.80
11582463--11583415	240	4.0	238	82	5	1111	42	13	9	34	1.77
11582497--11583369	480	1.8	481	86	4	1289	42	13	9	34	1.77
11595865--11596035	79	2.1	80	82	5	211	42	25	8	23	1.81
11605548--11605869	134	2.4	134	85	1	412	38	19	13	29	1.89
11605775--11605844	33	2.1	33	89	5	106	34	18	12	34	1.89
11605775--11605861	33	2.6	33	83	1	93	35	20	11	32	1.89
11606442--11606483	14	3.0	14	85	0	57	19	0	16	64	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11609463--11609521	20	2.9	20	73	9	57	32	0	0	67	0.91
11610215--11610263	3	16.3	3	100	0	98	65	0	0	34	0.93
11610851--11610892	20	2.0	20	86	4	57	33	2	28	35	1.70
11611414--11611456	14	2.9	15	80	19	54	20	4	0	74	1.00
11615220--11615332	60	1.9	59	81	5	138	56	11	14	17	1.66
11615619--11615656	20	1.9	20	94	0	67	86	2	7	2	0.74
11615618--11615659	19	2.3	18	81	18	59	88	2	7	2	0.69
11616429--11616948	119	4.4	119	80	4	475	19	21	15	44	1.86
11617575--11617797	3	76.0	3	76	11	169	31	2	5	60	1.33
11617566--11617617	24	2.2	24	85	0	68	26	9	1	61	1.38
11618565--11618619	8	6.8	8	78	13	51	12	1	3	81	0.89
11618725--11618763	16	2.3	16	91	8	60	61	7	0	30	1.24
11618811--11618869	24	2.7	22	80	14	68	62	6	1	28	1.30
11618823--11618869	24	2.0	23	88	8	69	61	8	2	27	1.36
11618810--11618876	22	3.0	21	76	16	64	62	5	1	29	1.28
11621862--11621899	20	1.9	20	84	10	51	18	7	2	71	1.23
11622438--11622528	46	2.0	46	83	12	116	46	13	20	19	1.83
11623585--11624040	117	3.9	117	81	5	341	19	21	14	44	1.85
11623771--11623968	56	3.4	56	71	13	175	20	19	14	44	1.86
11623597--11624146	119	4.6	120	81	6	498	18	21	14	45	1.86
11624760--11624862	3	34.7	3	72	19	56	32	4	5	57	1.44
11625090--11625135	20	2.2	21	80	7	58	43	6	21	28	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11625717--11625757	6	6.8	6	79	20	50	17	0	2	80	0.82
11625707--11625760	19	2.8	20	83	8	76	16	1	3	77	1.00
11625708--11625757	25	2.0	25	88	0	73	16	2	2	80	0.91
11625953--11625996	19	2.2	21	84	8	56	61	11	0	27	1.30
11625951--11625996	18	2.4	19	85	10	58	60	10	0	28	1.30
11626644--11626693	26	1.9	26	83	0	64	24	8	12	56	1.62
11635244--11635294	21	2.4	21	90	0	84	39	27	7	25	1.83
11638038--11638812	186	4.1	185	83	5	941	36	15	10	37	1.82
11638722--11638886	62	2.7	61	85	5	224	33	17	10	37	1.85
11638561--11639067	247	2.0	248	85	1	696	34	16	10	39	1.82
11638810--11639431	186	3.4	184	86	2	861	34	14	10	40	1.81
11638609--11639124	247	2.1	246	83	5	630	34	14	10	39	1.81
11638370--11639253	433	2.0	436	84	2	1157	34	15	10	39	1.81
11639371--11639487	62	1.9	62	87	0	171	37	13	9	39	1.77
11639373--11639501	62	2.1	62	83	0	159	37	14	8	39	1.77
11638985--11639882	434	2.1	432	86	2	1226	35	14	10	39	1.80
11639167--11639696	248	2.1	248	84	2	699	36	15	9	38	1.81
11639418--11640088	186	3.6	185	82	4	735	36	15	9	38	1.80
11638175--11640678	620	4.0	618	83	4	2869	35	14	10	39	1.81
11639403--11640088	372	1.8	372	83	6	897	36	14	10	38	1.81
11639862--11640333	246	1.9	245	85	3	653	35	14	9	40	1.79
11640102--11641235	186	6.1	185	84	4	1316	34	14	11	40	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11640102--11641224	373	3.0	371	85	3	1467	34	13	11	39	1.81
11641783--11641854	12	5.8	12	72	6	63	19	6	30	43	1.77
11641784--11641862	25	3.2	25	83	0	104	18	7	30	43	1.78
11647569--11647606	18	2.1	18	85	9	51	31	18	5	44	1.72
11649604--11649648	4	11.2	4	95	0	81	26	0	22	51	1.49
11649646--11649695	3	16.7	3	100	0	100	34	0	0	66	0.92
11660194--11660236	12	3.4	12	81	12	50	83	4	6	4	0.89
11661446--11661532	35	2.5	35	90	0	129	18	17	11	52	1.73
11661564--11661814	104	2.4	104	80	5	258	19	18	11	50	1.76
11667106--11667173	17	4.2	17	74	11	61	10	10	2	76	1.12

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105