genome.fa.s135.2.7.7.80.10.50.1000.90.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  90  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15930898--15930930	8	4.0	8	92	7	57	75	0	0	24	0.80
15930898--15930930	17	2.0	17	94	5	59	75	0	0	24	0.80
15932826--15932853	2	14.0	2	100	0	56	50	0	0	50	1.00
15934590--15934840	126	2.0	125	95	3	452	25	14	17	43	1.87
15948408--15948449	21	2.0	21	81	9	50	61	0	9	28	1.27
15949292--15949345	25	2.2	24	77	9	56	25	0	5	68	1.11
15951838--15951868	2	16.0	2	93	6	55	51	0	0	48	1.00
15952510--15952554	20	2.2	20	80	7	56	51	0	2	46	1.13
15956942--15956975	17	1.9	18	88	5	52	20	2	2	73	1.09
15959511--15959538	2	14.0	2	100	0	56	50	0	0	50	1.00
15961770--15961827	30	1.9	30	82	6	73	55	1	3	39	1.27
15961794--15961837	19	2.3	18	81	11	52	50	0	4	45	1.22
15969117--15969153	18	2.0	19	89	5	58	45	0	18	35	1.50
15979125--15979170	18	2.4	19	78	7	58	60	0	0	39	0.97
15979786--15979982	98	2.0	98	86	3	272	39	4	19	37	1.71
15982411--15982460	18	2.8	18	90	3	75	12	2	16	70	1.26
15982415--15982460	17	2.6	18	89	3	67	13	2	17	67	1.33
15982668--15982818	34	4.5	34	72	7	92	45	9	7	37	1.65
15984571--15984600	14	2.1	15	93	6	53	76	0	16	6	0.99
15984744--15984825	20	4.2	20	66	18	55	15	1	62	20	1.40
15985316--15985364	25	1.9	26	91	4	82	46	2	10	40	1.49
15987814--15988121	156	2.0	154	87	3	449	43	8	8	39	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15989908--15989932	12	2.1	12	100	0	50	24	28	24	24	2.00
15991263--15991288	13	2.0	13	100	0	52	23	15	23	38	1.92
15995222--15995257	13	2.8	13	91	4	56	22	22	22	33	1.97
15996194--15996223	3	10.0	3	92	0	51	63	0	36	0	0.95
15996970--15997008	12	3.5	12	80	20	57	5	33	0	61	1.18
15996959--15997010	21	2.5	21	96	0	95	3	34	0	61	1.14
16012128--16012182	22	2.7	20	76	20	60	5	10	5	78	1.08
16021510--16021560	21	2.4	22	77	9	61	39	3	1	54	1.30
16032969--16033005	18	2.1	18	100	0	74	40	21	0	37	1.54
16038025--16038105	37	2.2	37	82	4	101	35	11	18	34	1.86
16038229--16038300	37	1.9	38	85	2	101	37	5	16	40	1.72
16043684--16043712	14	2.1	14	100	0	58	48	27	10	13	1.75
16043901--16043989	30	3.0	30	72	0	88	40	28	13	17	1.88
16047215--16047252	18	2.1	19	90	5	60	28	7	5	57	1.49
16048642--16048686	9	5.0	9	80	0	54	64	20	2	13	1.38
16053261--16053307	23	2.0	23	95	0	85	34	17	19	29	1.94
16058183--16058258	37	2.1	37	87	5	109	46	6	26	21	1.75
16059857--16059891	2	17.5	2	100	0	70	48	0	0	51	1.00
16059889--16059915	4	6.8	4	100	0	54	25	0	0	74	0.83
16076030--16076454	218	2.0	215	81	6	511	32	9	4	53	1.55
16076545--16076598	20	2.5	22	82	11	67	37	1	0	61	1.07
16076761--16076795	18	2.0	17	88	5	52	40	2	0	57	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16077745--16077789	22	2.1	21	83	4	54	35	6	2	55	1.38
16076521--16078887	924	2.5	925	79	8	2335	31	10	5	52	1.57
16078382--16078469	43	2.1	43	81	10	103	31	4	4	59	1.38
16078696--16079107	217	1.9	219	79	7	460	31	11	6	50	1.63
16081346--16081373	3	9.3	3	100	0	56	67	0	0	32	0.91
16081521--16081700	30	6.1	30	70	10	111	45	29	3	21	1.69
16081571--16081612	15	2.8	15	88	0	66	50	38	0	11	1.40
16081690--16081746	22	2.4	24	82	11	64	52	26	0	21	1.47
16081749--16081778	14	2.1	14	100	0	60	53	33	0	13	1.40
16082913--16082951	17	2.3	18	86	8	55	17	0	7	74	1.05
16087975--16088019	20	2.2	20	84	7	56	24	13	8	53	1.68
16093763--16093943	41	4.4	41	85	2	218	24	11	18	45	1.81
16093923--16093976	26	2.1	26	96	0	99	29	5	18	46	1.72
16093889--16094018	67	1.9	67	82	0	161	30	11	16	42	1.83
16093799--16094097	149	2.0	152	84	2	388	26	11	18	43	1.84
16093845--16094051	108	1.9	108	88	2	308	27	11	18	42	1.84
16093949--16094143	41	4.7	42	81	5	207	26	11	18	42	1.85
16093956--16094143	42	4.5	42	81	7	186	26	12	18	43	1.85
16093949--16094143	85	2.3	83	84	2	221	26	11	18	42	1.85
16093988--16094186	85	2.3	84	78	5	193	28	12	17	41	1.86
16102151--16102574	214	2.0	215	92	0	706	29	15	17	37	1.91
16106421--16106482	20	3.2	20	79	2	72	40	0	0	59	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16106440--16106502	12	5.3	12	75	17	53	34	0	0	65	0.93
16106434--16106505	20	3.8	20	75	17	73	34	0	0	65	0.93
16106489--16106532	23	1.9	23	81	9	54	45	0	0	54	0.99
16109722--16109748	2	13.5	2	100	0	54	48	0	51	0	1.00
16109906--16109942	8	4.6	8	96	0	65	37	13	35	13	1.84
16125074--16125199	36	3.6	34	84	6	114	26	4	30	37	1.77
16125100--16125206	18	5.9	18	76	0	106	27	5	31	35	1.80
16125098--16125201	36	2.9	36	91	0	172	26	5	30	36	1.80
16125550--16125647	6	16.3	6	95	0	178	33	47	0	18	1.49
16131530--16131574	20	2.2	20	84	0	54	40	4	6	48	1.49
16136144--16136174	16	1.9	16	93	0	53	35	0	3	61	1.12
16136170--16136216	22	2.2	21	92	7	78	48	0	0	51	1.00
16137332--16137409	40	2.0	40	86	0	111	30	19	8	41	1.82
16137355--16137434	36	2.1	39	84	9	103	33	16	6	43	1.73
16137741--16137829	24	3.4	27	69	16	71	47	0	2	50	1.13
16139420--16139510	34	2.7	34	84	0	110	39	17	9	32	1.83
16146419--16146443	13	1.9	13	100	0	50	56	0	8	36	1.29
16147432--16148910	187	8.0	187	81	6	1533	35	13	11	39	1.82
16147429--16148890	555	2.6	553	83	5	1703	35	13	11	39	1.82
16147417--16148853	742	1.9	738	83	3	1852	34	13	12	39	1.82
16147596--16149123	742	2.1	732	78	8	1545	35	13	11	39	1.81
16149524--16149574	28	2.0	24	85	14	66	21	5	31	41	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16152709--16152776	35	1.9	35	90	0	109	36	17	11	33	1.86
16154743--16154767	11	2.3	11	100	0	50	24	8	32	36	1.84
16155000--16155199	78	2.6	78	83	7	239	52	4	6	37	1.46
16156469--16156510	11	3.8	11	87	0	66	19	0	30	50	1.48
16156468--16156510	22	2.0	22	95	0	77	20	0	30	48	1.50
16156535--16156691	52	3.0	53	84	3	203	42	7	23	26	1.81
16157517--16157558	11	3.8	11	87	0	66	19	0	30	50	1.48
16157516--16157558	22	2.0	22	95	0	77	20	0	30	48	1.50
16157584--16157714	52	2.5	53	87	2	194	48	8	18	25	1.76
16157584--16157738	52	3.0	52	83	1	186	44	7	20	27	1.79
16159914--16159969	27	2.1	27	100	0	112	23	10	25	41	1.86
16160190--16160238	18	2.7	18	84	9	64	51	2	2	44	1.24
16161762--16161849	28	2.7	33	73	20	78	56	5	6	30	1.49
16164778--16164905	6	21.7	6	72	21	85	15	3	0	80	0.88
16164778--16164900	35	3.5	33	76	18	117	15	3	0	80	0.89
16164782--16164903	44	2.8	44	82	5	140	16	3	0	79	0.91
16164779--16164905	49	2.6	50	79	10	136	15	3	0	80	0.89
16164782--16164887	41	2.5	41	83	9	115	16	2	0	79	0.91
16164994--16165038	20	2.2	21	88	4	65	20	4	4	71	1.21
16165027--16165069	13	3.5	13	81	9	54	18	0	2	79	0.85
16165473--16165520	11	4.4	11	86	0	60	27	29	20	22	1.99
16165880--16165928	24	2.0	23	81	14	55	24	0	4	71	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16165940--16166003	22	2.9	22	72	25	62	10	6	0	82	0.82
16165941--16166007	12	5.8	12	77	15	63	11	5	0	82	0.84
16165948--16166016	28	2.5	28	85	4	86	13	5	1	79	0.97
16165942--16166007	6	10.5	6	73	15	53	12	6	0	81	0.85
16165988--16166031	23	2.0	22	86	4	61	20	6	2	70	1.21
16166019--16166333	58	5.4	56	83	8	278	45	6	9	37	1.64
16166315--16166351	17	2.2	17	100	0	74	48	5	0	45	1.25
16166062--16166345	58	4.8	58	86	8	357	45	7	9	37	1.65
16166322--16166359	17	2.3	17	86	4	51	65	5	0	28	1.14
16166332--16166578	61	4.1	60	87	7	322	44	5	12	37	1.65

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105