genome.fa.s135.2.7.7.80.10.50.1000.38.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  38  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7212379--7212841	36	12.8	35	68	9	162	16	15	16	51	1.77
7212342--7212622	144	2.0	144	78	5	300	14	16	18	50	1.78
7212652--7212731	37	2.2	37	78	10	87	17	22	16	43	1.87
7212563--7212803	74	3.3	72	74	5	227	17	16	15	50	1.78
7212769--7212872	37	2.8	37	79	5	104	21	15	13	50	1.78
7212969--7213161	73	2.6	71	76	7	190	12	13	18	54	1.70
7213207--7213238	10	3.1	11	86	13	50	84	15	0	0	0.63
7213208--7213238	16	1.9	16	100	0	62	87	12	0	0	0.55
7216503--7216545	21	2.0	21	100	0	86	18	25	9	46	1.79
7220232--7220876	356	1.8	356	84	2	891	36	12	14	37	1.84
7231464--7231844	178	2.1	181	87	2	554	34	16	10	38	1.84
7236708--7236947	122	2.0	122	85	3	331	42	10	13	33	1.77
7248187--7248235	20	2.3	23	82	10	59	24	2	6	67	1.24
7248325--7248357	16	2.1	16	100	0	66	60	0	0	39	0.97
7252204--7252527	161	2.0	161	95	0	576	31	13	16	37	1.88
7254840--7254869	15	2.0	15	93	0	51	23	0	6	70	1.11
7258384--7258454	22	3.2	22	80	4	63	46	4	8	40	1.54
7258663--7258985	22	14.8	22	68	11	99	47	5	10	36	1.61
7258662--7258810	65	2.3	66	77	1	156	51	4	8	36	1.53
7259099--7259205	43	2.5	44	81	1	126	44	11	9	34	1.72
7259099--7259224	22	5.8	22	76	1	101	42	11	10	35	1.74
7261198--7261253	19	2.8	20	81	7	71	5	12	3	78	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7261306--7261347	11	3.7	11	79	17	50	0	23	0	76	0.79
7261383--7261443	23	2.7	22	83	14	72	3	22	0	73	0.97
7261384--7261423	13	3.0	13	88	3	53	2	25	0	72	0.97
7262650--7262704	18	2.9	19	71	10	51	12	3	7	76	1.12
7262658--7262703	19	2.4	19	83	16	60	10	4	6	78	1.08
7262695--7262730	13	2.6	14	91	8	65	11	5	5	77	1.10
7262964--7263109	45	3.3	43	78	11	134	43	15	9	31	1.79
7262805--7263110	47	6.7	44	71	10	161	41	16	7	34	1.77
7267598--7267667	16	4.2	17	76	12	56	51	7	12	28	1.66
7269375--7269399	12	2.1	12	100	0	50	68	8	16	8	1.38
7269904--7269929	12	2.2	12	100	0	52	7	46	23	23	1.78
7281642--7281692	25	2.0	26	92	3	86	45	23	3	27	1.70
7282581--7282627	16	2.8	17	87	3	60	63	10	10	14	1.51
7283706--7283749	3	14.7	3	100	0	88	65	0	0	34	0.93
7284613--7284654	19	2.2	19	83	8	50	47	0	0	52	1.00
7284627--7284668	21	2.0	21	81	9	50	42	7	0	50	1.30
7285002--7285044	23	1.9	23	90	4	70	9	16	0	74	1.06
7286356--7286415	22	2.7	22	84	0	75	48	10	8	33	1.67
7286441--7286587	41	3.5	41	77	10	120	47	6	8	36	1.61
7286479--7286562	41	2.0	41	88	4	125	47	4	8	39	1.55
7286600--7286682	22	3.8	22	76	9	71	43	6	13	37	1.68
7286612--7286671	21	2.8	22	78	12	70	41	5	13	40	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7286739--7286793	22	2.5	21	88	11	83	49	0	5	45	1.25
7286756--7286837	22	3.7	22	80	6	60	42	7	9	40	1.66
7289640--7289695	21	2.7	21	88	2	78	42	12	8	35	1.74
7295761--7296067	151	2.0	153	86	3	424	39	17	10	32	1.84
7301166--7301332	82	2.0	82	95	0	298	35	10	13	41	1.78
7302857--7302897	3	14.0	3	94	5	75	31	0	0	68	0.90
7302979--7303135	76	2.1	76	98	0	305	29	3	25	41	1.73
7308514--7308569	26	2.1	27	81	15	73	21	17	7	53	1.67
7308520--7308569	26	2.0	25	88	7	75	20	16	8	56	1.65
7312304--7312356	24	2.2	24	96	0	97	39	11	22	26	1.88
7312437--7312479	22	2.0	22	90	0	68	32	9	11	46	1.72
7315520--7315557	20	1.9	20	94	0	67	50	0	5	44	1.24
7318470--7318551	38	2.2	37	78	10	87	40	2	1	56	1.20
7318482--7318572	45	2.0	45	81	8	105	42	1	1	54	1.14
7318540--7318590	26	2.0	25	85	7	68	60	1	0	37	1.08
7321043--7321076	17	1.9	17	88	5	50	50	2	8	38	1.49
7323229--7323258	9	3.2	9	95	4	51	46	0	0	53	1.00
7324190--7324312	61	2.0	62	90	1	194	32	4	14	48	1.63
7326010--7326058	25	2.0	25	84	7	66	42	8	2	46	1.45
7326494--7326553	31	1.9	31	83	6	77	61	6	5	26	1.42
7326618--7326656	17	2.2	19	86	9	55	46	5	12	35	1.65
7327248--7327289	8	5.2	8	80	8	50	40	0	0	59	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7327276--7327324	19	2.5	20	84	15	68	44	0	0	55	0.99
7327274--7327323	21	2.4	21	90	9	77	46	0	0	54	1.00
7328154--7328452	58	5.1	59	79	6	290	37	11	6	44	1.66
7328198--7328452	117	2.2	116	85	6	343	38	9	6	45	1.64
7328450--7328558	4	26.8	4	79	12	66	69	2	0	26	1.08
7328449--7328487	5	8.4	5	94	5	57	79	0	0	20	0.73
7328449--7328559	22	5.2	22	66	17	65	70	2	0	26	1.07
7328444--7328559	8	13.0	9	70	17	73	69	2	1	25	1.10
7330896--7330930	18	1.9	18	88	0	52	22	14	25	37	1.92
7344593--7344631	19	2.1	19	95	0	69	41	10	7	41	1.68
7345607--7345639	8	4.1	8	100	0	66	27	36	0	36	1.57
7347780--7347823	20	2.2	20	100	0	88	29	20	20	29	1.98
7352142--7352166	1	25.0	1	100	0	50	100	0	0	0	0.00
7354056--7354097	22	1.9	22	90	0	66	33	11	9	45	1.73
7354310--7354369	25	2.5	23	89	5	84	13	30	18	38	1.89
7358553--7358889	59	5.7	59	87	5	418	36	13	7	42	1.73
7358553--7358872	117	2.7	119	87	5	445	37	14	7	40	1.74
7358900--7358931	14	2.3	14	94	0	55	78	0	3	18	0.89
7359073--7359101	13	2.2	13	100	0	58	20	24	41	13	1.89
7359836--7359936	42	2.5	42	82	10	120	64	1	4	28	1.25
7359907--7360010	27	3.8	29	81	8	85	62	0	7	29	1.23
7359916--7360068	7	21.9	7	70	20	58	67	1	5	24	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7359977--7360022	15	3.2	15	80	17	53	67	0	6	26	1.15
7360009--7360089	5	16.6	5	78	17	66	77	3	1	17	0.97
7360009--7360094	35	2.5	32	81	12	91	76	4	1	17	1.01
7369779--7369868	45	2.0	45	85	8	121	31	15	8	44	1.77
7369889--7370120	115	2.0	112	82	4	277	37	10	6	45	1.65
7369823--7370119	57	5.2	57	80	5	298	36	12	7	44	1.70
7370950--7371031	35	2.4	33	84	11	103	67	1	2	29	1.11
7371012--7371042	11	2.8	11	95	0	53	80	0	0	19	0.71
7371995--7372027	16	2.1	16	88	5	50	39	0	18	42	1.50
7377103--7377131	10	2.7	11	94	5	51	65	0	3	31	1.09
7377116--7377159	22	2.0	21	86	4	61	47	2	2	47	1.27
7377626--7377664	17	2.3	17	86	8	53	43	0	5	51	1.24
7377780--7377824	19	2.4	18	76	20	56	28	0	8	62	1.25
7391435--7391523	44	2.0	43	91	2	142	33	12	5	48	1.64
7391478--7391775	57	5.2	56	80	5	314	36	9	6	46	1.63
7391478--7391752	113	2.4	113	82	4	347	36	10	6	46	1.64
7391688--7391720	16	2.0	17	88	5	50	45	0	3	51	1.16
7391779--7391826	18	2.8	18	81	12	57	72	2	6	18	1.15
7391852--7391933	3	27.7	3	86	7	114	67	2	1	29	1.11
7392658--7392742	34	2.5	34	85	9	104	68	2	3	25	1.18
7392698--7392749	16	3.5	14	79	20	61	73	0	0	26	0.84
7392866--7392905	21	1.9	21	85	10	55	47	0	5	47	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7393687--7393718	16	2.0	16	93	0	55	34	0	21	43	1.53
7399323--7399365	19	2.4	17	80	7	50	41	0	4	53	1.21
7402688--7402776	44	2.0	44	80	8	101	32	14	6	46	1.71
7402727--7402970	114	2.1	113	84	10	320	36	10	6	46	1.64
7402727--7402971	57	4.3	57	79	10	236	36	10	6	46	1.64
7403781--7403866	34	2.5	34	80	12	88	69	3	1	25	1.11
7404811--7404842	16	2.0	16	100	0	64	37	0	18	43	1.51
7409941--7409992	20	2.6	20	75	6	52	50	1	1	46	1.23
7410451--7410493	19	2.4	17	80	7	50	41	0	4	53	1.21
7419396--7419466	37	1.9	37	100	0	142	26	9	21	42	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105