genome.fa.s135.2.7.7.80.10.50.1000.102.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  102  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18673383--18673475	39	2.4	40	80	5	109	47	13	25	12	1.79
18678126--18678206	29	2.8	29	73	25	80	56	0	4	38	1.21
18679416--18679448	4	8.2	4	93	0	57	24	3	0	72	0.98
18686000--18686426	137	3.2	138	75	10	352	49	9	15	25	1.75
18686138--18686373	128	1.8	129	81	5	300	50	9	16	24	1.75
18686885--18687130	133	1.8	133	84	0	330	46	10	16	26	1.79
18687006--18687311	161	1.9	159	83	1	396	45	9	19	25	1.80
18687556--18687628	9	8.0	9	78	3	65	38	4	1	56	1.27
18688018--18688091	29	2.6	29	87	8	114	36	12	2	48	1.55
18688018--18688108	10	9.4	10	73	11	64	36	12	2	49	1.52
18688018--18688108	19	4.7	19	70	12	69	36	12	2	49	1.52
18688269--18688752	134	3.6	135	89	2	705	47	11	19	21	1.80
18690653--18690745	27	3.2	27	66	16	69	38	12	4	44	1.63
18690595--18690875	58	4.7	58	80	11	325	37	10	4	46	1.60
18691183--18691248	33	2.0	33	100	0	132	33	24	18	24	1.97
18693540--18693607	20	3.2	19	75	17	55	73	2	4	19	1.13
18697458--18697495	19	2.0	19	89	0	58	55	0	2	42	1.14
18698018--18698078	16	3.5	16	69	26	52	45	1	0	52	1.10
18698025--18698088	20	3.3	20	75	20	82	43	3	0	53	1.16
18698152--18698181	14	2.1	14	93	0	51	46	3	0	50	1.18
18699453--18699500	17	2.8	17	74	0	51	50	2	2	45	1.25
18701119--18701171	26	2.0	26	85	0	70	35	3	5	54	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18703475--18703515	21	2.0	21	85	0	55	53	7	2	36	1.42
18703540--18703590	22	2.3	22	79	0	57	49	3	9	37	1.55
18703841--18703904	22	2.9	22	77	9	67	57	3	4	34	1.35
18704011--18704061	9	5.4	9	81	6	57	37	1	3	56	1.29
18704011--18704061	19	2.7	18	73	8	57	37	1	3	56	1.29
18704851--18704894	19	2.3	19	92	0	70	45	0	13	40	1.44
18704877--18704961	22	3.9	21	73	13	64	47	3	7	42	1.48
18704910--18704963	22	2.5	22	84	0	72	42	1	9	46	1.46
18705017--18705164	22	6.7	22	69	6	84	47	6	6	39	1.55
18705063--18705164	44	2.3	44	83	5	125	48	3	6	41	1.48
18705435--18705540	22	4.8	22	75	6	90	52	4	6	35	1.48
18705440--18705523	44	1.9	43	83	7	107	53	3	5	36	1.43
18705487--18705525	11	3.5	11	78	0	51	56	7	2	33	1.41
18705674--18705732	22	2.7	21	76	7	55	42	8	11	37	1.72
18705711--18705751	21	1.9	21	85	5	55	43	7	9	39	1.65
18705724--18705800	22	3.5	22	77	13	70	45	5	9	40	1.58
18705808--18705886	22	3.4	22	70	21	70	54	6	11	27	1.60
18705828--18705907	21	3.5	21	72	21	79	52	5	12	30	1.60
18705807--18705905	49	2.0	49	98	0	189	54	6	11	28	1.59
18705923--18705963	21	1.9	22	85	5	57	43	4	14	36	1.67
18706014--18706148	44	3.1	44	83	8	152	50	8	4	36	1.54
18706015--18706140	66	1.9	66	81	0	153	50	8	4	36	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18706014--18706265	22	11.5	22	71	6	125	46	7	8	38	1.63
18706584--18706640	22	2.7	21	83	5	69	52	5	0	42	1.24
18706606--18706630	12	2.1	12	100	0	50	48	8	0	44	1.32
18706584--18706658	21	3.5	21	82	7	71	50	6	1	41	1.37
18712812--18712878	30	2.3	28	80	10	71	41	1	0	56	1.08
18712838--18712981	57	2.5	56	77	13	143	48	0	0	50	1.11
18712889--18712945	22	2.6	22	76	13	64	49	0	0	50	1.00
18713025--18713062	19	2.0	19	89	0	58	52	0	0	47	1.00
18713606--18713630	2	12.5	2	100	0	50	52	0	0	48	1.00
18714361--18714689	58	5.7	57	83	8	405	35	11	6	46	1.65
18714361--18714690	118	2.8	117	90	4	494	35	11	6	46	1.65
18714722--18714799	6	13.7	6	71	15	58	78	1	6	14	1.01
18714734--18714787	18	3.1	18	83	2	74	81	1	3	12	0.91
18714704--18714799	17	5.6	16	74	17	70	77	2	6	14	1.06
18714714--18714813	22	4.5	21	72	14	67	76	2	6	16	1.08
18714702--18714800	35	2.9	32	78	13	92	76	2	7	14	1.08
18715656--18715781	44	2.9	43	76	6	105	67	7	7	18	1.37
18715872--18715929	6	9.2	6	78	14	55	77	1	1	18	0.94
18715867--18715944	39	2.0	39	82	12	97	76	1	3	17	1.00
18716141--18716630	125	3.9	125	90	2	723	37	21	17	23	1.94
18716152--18716630	42	11.5	42	89	3	698	37	21	17	23	1.94
18717878--18717941	14	4.7	14	71	28	50	7	17	0	75	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18717899--18717960	23	2.6	24	78	19	76	6	16	0	77	0.97
18717899--18717950	27	2.0	26	88	7	79	5	15	0	78	0.92
18718285--18718317	14	2.2	15	89	10	50	18	0	0	81	0.68
18718285--18718317	5	6.6	5	89	10	50	18	0	0	81	0.68
18721843--18722237	59	6.7	57	85	7	470	35	12	6	45	1.67
18722251--18722411	16	9.9	15	69	20	69	73	3	4	18	1.14
18722273--18722350	6	13.7	6	71	20	60	78	1	6	14	1.01
18722265--18722349	5	16.4	5	72	18	59	77	2	5	14	1.05
18722255--18722349	11	8.4	11	76	17	79	76	2	6	14	1.07
18722255--18722407	22	6.9	22	67	18	77	73	3	4	17	1.15
18722252--18722350	40	2.5	38	81	8	108	77	2	6	14	1.04
18722252--18722351	35	2.9	33	81	10	112	77	2	7	14	1.07
18722373--18722412	4	9.8	4	83	5	53	77	2	0	20	0.88
18723438--18723517	26	3.0	26	80	20	85	76	1	3	18	1.01
18723438--18723515	21	3.8	20	78	11	68	76	1	3	17	1.00
18723443--18723500	6	9.2	6	78	14	55	77	1	1	18	0.94
18723436--18723517	20	4.4	19	71	14	73	75	1	3	19	1.02
18725923--18725959	19	1.9	19	100	0	74	29	5	10	54	1.57
18726804--18726849	19	2.4	20	85	7	60	71	0	13	15	1.14
18726805--18726864	27	2.2	27	80	8	68	75	0	10	15	1.05
18726815--18726858	9	4.9	9	81	8	54	68	0	11	20	1.20
18726804--18726858	18	2.9	19	84	7	60	70	0	12	16	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18727470--18727628	63	2.5	63	77	6	162	37	11	22	28	1.89
18727952--18727997	22	2.1	22	91	0	74	39	4	13	43	1.63
18727961--18728027	30	2.2	30	86	5	91	34	2	14	47	1.60
18727991--18728041	21	2.4	22	81	15	70	33	1	15	49	1.56
18728513--18728671	41	3.9	41	85	2	194	27	10	16	45	1.80
18728513--18728678	83	2.0	81	87	2	233	27	10	16	45	1.80
18728560--18728693	42	3.2	42	77	9	139	29	9	12	48	1.73
18729641--18730049	194	2.1	195	84	3	540	50	4	8	36	1.54
18733845--18733959	43	2.7	46	75	16	113	46	0	0	52	1.06
18733895--18733949	22	2.5	23	74	11	62	50	0	0	49	1.00
18735893--18735953	31	2.0	31	100	0	122	39	18	19	22	1.92
18736596--18736660	14	4.2	15	74	18	53	50	1	0	47	1.10
18736596--18736656	16	4.0	14	76	21	52	50	1	0	47	1.10
18736632--18736676	24	2.0	21	87	12	63	62	0	0	37	0.96
18739369--18739402	14	2.4	15	90	9	54	41	0	0	58	0.98
18739507--18739552	15	2.8	16	81	18	51	43	0	10	45	1.39
18739507--18739552	17	2.8	17	78	18	53	43	0	10	45	1.39
18740414--18740446	17	2.0	16	94	5	57	30	6	6	57	1.47
18743287--18743339	21	2.6	21	94	5	92	50	0	0	49	1.00
18743312--18743370	30	1.9	31	86	6	84	55	0	0	44	0.99
18743353--18743380	14	2.0	14	100	0	56	71	0	0	28	0.86
18743356--18743397	14	2.8	16	86	10	54	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18744182--18744213	17	1.9	16	93	6	55	31	9	6	53	1.58
18746447--18746477	15	2.0	16	93	6	55	29	0	0	70	0.87
18746481--18746533	24	2.2	25	83	12	67	49	0	0	50	1.00
18747231--18747256	2	13.0	2	100	0	52	50	0	0	50	1.00
18749358--18749400	6	6.5	6	80	19	50	30	2	0	67	1.03
18749358--18749413	7	8.0	7	77	15	62	30	1	0	67	1.01
18749358--18749400	13	3.2	13	93	3	68	30	2	0	67	1.03
18749826--18749882	27	2.1	27	87	6	80	40	0	0	59	0.97
18750363--18750424	11	5.3	11	72	14	52	24	3	8	64	1.36
18750362--18750424	24	2.6	24	84	0	90	25	3	7	63	1.37

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105