genome.fa.s135.2.7.7.80.10.50.1000.105.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  105  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19379492--19379585	39	2.4	39	84	7	118	19	1	58	21	1.45
19379819--19379856	20	2.0	20	89	5	60	34	0	5	60	1.19
19381677--19381720	16	3.0	16	78	18	51	45	0	0	54	0.99
19383043--19383091	6	8.2	6	88	0	71	22	0	48	28	1.50
19383435--19383490	21	2.9	18	80	14	76	28	39	3	28	1.73
19383439--19383481	21	2.0	21	95	0	77	25	44	2	27	1.66
19393228--19393305	34	2.3	34	86	0	102	46	3	6	43	1.47
19393550--19393575	2	13.0	2	100	0	52	50	0	0	50	1.00
19403446--19403506	31	1.9	32	83	9	81	72	1	6	19	1.16
19404693--19404722	12	2.5	12	94	0	51	60	3	10	26	1.45
19405458--19405714	114	2.3	113	78	3	266	40	11	24	24	1.88
19405935--19406149	115	1.9	116	81	4	265	42	13	23	20	1.88
19406876--19406936	20	2.9	20	79	13	68	0	16	1	81	0.76
19406886--19406951	10	6.9	9	77	16	62	0	12	3	84	0.72
19406876--19406951	30	2.5	30	85	4	91	0	14	2	82	0.77
19406909--19406951	17	2.5	17	96	3	77	0	6	4	88	0.63
19406907--19406941	13	2.9	12	88	12	54	0	5	2	91	0.50
19406877--19406951	12	6.2	12	78	9	64	0	13	2	84	0.74
19406877--19406941	19	3.2	19	79	16	67	0	13	1	84	0.69
19407233--19407269	16	2.2	17	90	4	58	0	8	2	89	0.58
19411030--19411089	31	1.9	31	86	6	86	71	0	6	21	1.08
19411030--19411119	25	3.5	25	71	18	69	72	2	5	20	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19412332--19412361	12	2.5	12	94	0	51	60	0	10	30	1.30
19413574--19413606	16	2.0	17	88	5	50	42	9	0	48	1.35
19433729--19433785	27	2.1	27	86	0	78	45	22	10	21	1.82
19434004--19434028	2	12.5	2	100	0	50	52	0	0	48	1.00
19439550--19439597	16	3.1	15	74	14	53	77	4	16	2	1.03
19454047--19454090	22	2.0	22	86	0	61	45	11	9	34	1.72
19454768--19454888	49	2.6	46	75	13	122	25	20	5	47	1.72
19455725--19455787	27	2.4	28	86	7	87	33	0	0	66	0.92
19455786--19455826	14	2.8	15	78	14	50	73	0	12	14	1.11
19460182--19460208	2	13.5	2	100	0	54	51	0	48	0	1.00
19469299--19469328	3	10.0	3	100	0	60	66	0	33	0	0.92
19475875--19476167	150	1.9	151	86	4	421	43	7	9	40	1.65
19477179--19477603	198	2.1	198	89	1	647	38	13	31	16	1.87
19478309--19478347	2	19.5	2	83	0	51	53	2	0	43	1.14
19482510--19482534	12	2.1	12	100	0	50	0	0	16	84	0.63
19483125--19483150	11	2.4	11	100	0	52	0	7	0	92	0.39
19492899--19492927	5	5.8	5	100	0	58	20	0	62	17	1.33
19493939--19493987	24	2.0	24	100	0	98	28	20	12	38	1.89
19497179--19497225	16	2.7	18	77	12	53	23	10	2	63	1.37
19503564--19503609	3	15.3	3	100	0	92	67	0	0	32	0.91
19504706--19504863	78	2.0	78	95	1	282	33	8	6	50	1.60
19512268--19512295	2	14.0	2	100	0	56	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19513947--19514218	144	1.9	142	90	4	431	29	19	18	32	1.96
19520150--19520178	6	4.8	6	100	0	58	82	0	0	17	0.66
19523873--19524071	99	2.0	99	100	0	398	36	21	10	32	1.86
19535439--19535727	69	4.2	69	79	2	285	25	24	19	31	1.98
19535484--19535737	138	1.8	138	81	0	319	26	23	19	31	1.98
19537750--19537798	2	24.5	2	95	0	89	46	0	0	53	1.00
19538746--19538812	19	3.6	19	82	10	75	40	1	5	52	1.35
19538770--19538810	17	2.4	17	100	0	82	46	0	0	53	1.00
19538770--19538812	2	22.5	2	90	9	72	46	0	0	53	1.00
19539029--19541523	7	363.0	7	95	4	4474	14	0	42	43	1.45
19542904--19543005	27	3.5	28	74	19	102	46	0	3	50	1.20
19542911--19542981	36	2.0	35	83	10	90	46	0	4	49	1.21
19543889--19543926	3	12.7	3	100	0	76	65	0	0	34	0.93
19543925--19543957	3	11.0	3	100	0	66	33	0	0	66	0.92
19545327--19545393	35	1.9	35	81	0	80	44	0	1	53	1.09
19545712--19545763	26	2.0	26	96	0	95	46	9	13	30	1.75
19547110--19547143	14	2.5	13	86	9	50	52	0	0	47	1.00
19555587--19555620	17	2.0	17	88	0	50	44	8	8	38	1.67
19558937--19558983	14	3.0	15	75	22	51	44	0	2	53	1.12
19561904--19562411	44	11.9	41	72	15	214	43	18	13	24	1.86
19561934--19562287	44	8.1	43	82	5	365	44	19	12	23	1.85
19561888--19562285	130	3.1	126	81	8	435	43	19	13	23	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19561904--19562285	86	4.4	86	85	4	430	44	19	13	23	1.86
19561984--19562362	174	2.2	174	79	7	414	44	18	13	24	1.85
19562300--19562398	41	2.4	41	88	5	137	43	19	12	25	1.85
19564005--19564059	18	3.3	18	70	19	64	7	10	0	81	0.86
19564008--19564058	14	3.4	14	75	19	57	7	11	0	80	0.90
19578080--19578192	11	10.0	11	69	21	56	61	0	0	37	1.02
19578084--19578120	12	2.9	13	84	15	51	72	0	0	27	0.84
19578086--19578197	41	2.7	42	71	18	97	61	0	0	37	1.02
19578141--19578201	20	3.1	19	76	19	61	59	0	1	39	1.08
19579173--19579252	29	2.8	29	73	17	76	50	0	1	48	1.08
19579314--19579347	13	2.6	13	90	0	50	29	0	0	70	0.87
19579777--19579817	19	2.2	19	86	0	55	70	0	4	24	1.06
19580516--19580546	16	1.9	16	93	0	53	58	0	3	38	1.15
19583389--19583416	3	9.3	3	100	0	56	32	0	35	32	1.58
19583833--19584015	92	2.0	92	84	2	242	55	19	9	15	1.67
19584918--19584946	13	2.1	14	93	6	51	13	0	3	82	0.79
19585221--19585270	26	1.9	27	88	8	77	42	0	0	58	0.98
19585294--19585361	32	2.1	33	83	2	84	47	11	1	39	1.49
19585371--19585410	21	1.9	21	84	0	53	45	5	7	42	1.54
19586661--19586705	23	2.0	23	81	0	54	48	6	6	37	1.56
19586740--19586773	16	2.2	16	94	5	61	26	0	0	73	0.83
19586803--19586858	26	2.2	25	87	9	78	60	3	0	35	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19586811--19586859	13	3.7	13	77	22	57	63	4	0	32	1.13
19587642--19587688	22	2.1	22	84	0	58	36	0	4	59	1.17

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105

The End!