genome.fa.s135.2.7.7.80.10.50.1000.57.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  57  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10709170--10709211	14	2.9	15	82	10	52	50	0	2	47	1.14
10711291--10711343	16	3.2	16	81	10	54	58	5	15	20	1.57
10715520--10715878	146	2.5	144	83	4	420	40	12	14	32	1.84
10715520--10715944	145	2.9	145	80	6	400	39	14	13	32	1.85
10716518--10716599	37	2.2	37	82	0	92	37	12	15	34	1.85
10716458--10716785	93	3.5	93	83	2	408	38	16	13	32	1.87
10716611--10716687	37	2.1	37	85	4	102	35	16	11	36	1.86
10716975--10717016	22	1.9	22	90	0	66	30	16	21	30	1.95
10717052--10717093	22	1.9	22	95	0	75	45	21	7	26	1.77
10716894--10717084	106	1.8	106	87	2	285	41	15	14	28	1.86
10717024--10717150	62	2.1	61	82	7	150	47	15	9	27	1.77
10717117--10717158	22	2.0	22	86	13	61	38	19	14	28	1.90
10717456--10717538	37	2.2	38	81	8	91	37	14	13	34	1.85
10718492--10718541	18	2.7	18	84	3	55	20	0	2	78	0.86
10719302--10719371	35	2.0	35	94	5	124	31	20	14	34	1.92
10720076--10720199	62	2.0	62	95	0	221	28	20	15	35	1.93
10729362--10729400	3	13.0	3	100	0	78	33	0	0	66	0.92
10730967--10731008	20	2.1	20	95	0	75	30	16	0	52	1.44
10733394--10733470	33	2.3	33	84	0	100	49	2	14	33	1.57
10733263--10733614	179	2.0	178	83	5	442	42	9	12	35	1.76
10734385--10734424	21	2.0	20	90	5	62	45	12	12	30	1.79
10744043--10745113	541	2.0	538	85	5	1455	38	14	15	32	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10747391--10747441	20	2.4	21	80	9	59	54	11	5	27	1.59
10748212--10748252	21	2.0	21	100	0	82	63	19	0	17	1.31
10749481--10749575	43	2.2	43	84	3	120	42	10	22	25	1.85
10754982--10755087	11	8.9	11	72	14	59	12	3	6	77	1.10
10755005--10755089	11	7.6	11	76	15	68	16	0	7	76	0.99
10755017--10755062	20	2.2	22	88	7	69	17	0	8	73	1.07
10755028--10755104	35	2.2	33	84	8	100	18	0	9	72	1.10
10754982--10755089	6	18.0	6	73	11	60	12	3	6	76	1.11
10755688--10755779	29	3.2	28	72	9	69	68	6	3	21	1.27
10755698--10755813	58	2.0	58	96	0	214	65	6	1	25	1.27
10755698--10755812	29	4.0	29	75	13	103	66	6	1	25	1.27
10756783--10756829	2	23.5	2	100	0	94	0	51	0	48	1.00
10759318--10759342	13	1.9	13	100	0	50	36	8	16	40	1.77
10767754--10767812	21	2.8	20	82	10	64	8	0	38	52	1.32
10767860--10767898	17	2.3	16	91	8	60	7	0	43	48	1.31
10767934--10767972	11	3.6	11	82	3	53	5	0	41	53	1.23
10768021--10768079	20	3.1	19	78	9	66	13	1	35	49	1.52
10768237--10768281	20	2.2	20	84	0	54	26	4	31	37	1.76
10768249--10768287	20	2.0	20	94	0	69	23	5	35	35	1.77
10770859--10770982	50	2.5	51	85	2	180	38	13	10	37	1.79
10771789--10772004	84	2.6	84	80	2	227	43	18	10	26	1.83
10771977--10772135	80	2.0	80	80	6	180	38	11	13	35	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10772001--10772177	40	4.5	39	81	3	185	37	10	14	36	1.81
10772001--10772170	80	2.2	78	85	5	225	37	10	15	37	1.82
10773354--10773868	119	4.4	116	84	5	622	35	12	6	44	1.69
10773354--10773867	59	8.7	57	85	6	568	35	12	6	44	1.69
10773356--10773879	58	8.9	58	85	6	565	35	12	6	45	1.67
10773891--10773943	13	4.4	12	83	9	56	79	3	1	15	0.96
10773894--10773952	22	2.6	23	81	13	77	79	5	3	11	1.01
10773902--10773944	11	4.1	10	82	8	50	81	2	2	13	0.89
10773979--10774019	4	10.0	4	86	2	55	73	2	2	21	1.07
10774880--10774936	19	3.0	18	73	19	53	71	1	5	21	1.14
10774896--10774986	24	3.9	24	78	15	93	68	2	5	24	1.22
10775050--10775147	28	3.4	28	69	18	67	65	2	5	27	1.25
10775115--10775158	11	3.8	12	82	11	56	72	4	0	22	1.02
10775092--10775166	25	3.1	25	81	7	75	68	5	5	21	1.30
10775313--10775341	10	2.9	10	100	0	58	0	0	6	93	0.36
10775348--10775601	42	6.1	41	90	3	355	34	23	19	23	1.97
10775348--10775601	83	3.0	83	90	2	366	34	23	19	23	1.97
10775843--10775913	30	2.4	30	100	0	142	30	14	19	35	1.91
10776625--10776656	9	3.4	9	95	4	55	12	15	0	71	1.14
10787050--10787504	59	7.7	58	84	6	565	35	12	6	45	1.67
10787137--10787176	16	2.4	16	87	8	53	45	0	7	47	1.31
10787516--10787587	18	4.0	17	77	15	65	77	4	4	13	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10787530--10787594	5	12.4	5	75	15	60	78	3	4	13	1.03
10787530--10787594	11	6.2	10	77	12	60	78	3	4	13	1.03
10787618--10787648	4	7.8	4	92	0	53	74	3	0	22	0.96
10788616--10788645	13	2.2	13	94	5	51	63	0	6	30	1.20
10791659--10791707	24	2.0	24	100	0	98	32	12	12	42	1.79
10794900--10794937	16	2.3	17	86	4	51	60	21	5	13	1.52
10796601--10796641	20	2.1	19	86	4	55	24	0	36	39	1.56
10796597--10796670	12	6.1	12	70	17	55	18	0	36	44	1.50
10796840--10796868	10	2.7	11	89	10	51	10	0	41	48	1.37
10796983--10797015	6	5.7	6	85	7	50	0	0	39	60	0.97
10796983--10797022	18	2.3	17	86	4	53	5	0	37	57	1.21
10797049--10797098	26	1.9	26	91	0	82	6	2	44	48	1.39
10797056--10797107	26	2.0	26	88	0	77	7	0	40	51	1.30
10797060--10797128	26	2.6	26	77	6	68	11	0	39	49	1.39
10797263--10797333	29	2.4	31	80	4	83	14	0	35	50	1.43
10797274--10797347	20	3.8	19	77	12	55	16	0	33	50	1.45
10797360--10797404	20	2.2	20	92	7	74	26	4	33	35	1.77
10798674--10798728	22	2.3	23	81	9	58	38	25	9	27	1.86
10798753--10798842	3	30.7	3	77	12	80	67	4	0	27	1.09
10801214--10801243	10	3.0	10	95	0	51	46	10	20	23	1.80
10803365--10803411	20	2.4	21	79	10	55	70	0	10	19	1.16
10808803--10808846	3	14.7	3	80	0	52	29	4	2	63	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10808804--10808902	12	8.8	11	70	22	55	30	3	7	59	1.39
10809775--10809820	12	4.2	11	84	13	60	19	0	8	71	1.11
10809769--10809814	12	3.8	12	88	5	67	19	0	8	71	1.11
10809795--10809849	17	3.4	16	78	12	60	21	1	1	74	1.01
10809795--10809866	31	2.4	31	77	15	78	22	1	5	70	1.15
10809824--10809864	18	2.4	17	87	4	55	24	0	4	70	1.06
10825674--10825802	44	2.9	44	74	4	116	53	9	18	18	1.70
10826486--10826769	116	2.5	116	85	0	354	22	23	13	40	1.90
10826799--10826912	56	2.0	56	81	6	133	25	22	10	41	1.86
10826955--10827224	111	2.4	111	80	1	283	22	21	16	40	1.91
10827462--10827509	15	3.3	14	80	8	60	31	0	8	60	1.26
10827516--10827555	3	13.3	3	94	0	53	35	25	0	40	1.56
10827518--10827564	15	3.1	15	90	0	67	34	19	0	46	1.50
10828375--10828442	5	13.2	5	72	21	52	26	0	1	72	0.94
10828363--10828440	28	3.0	26	75	19	72	24	2	1	71	1.06
10828375--10828442	7	9.9	7	75	19	63	26	0	1	72	0.94
10828375--10828433	12	5.0	11	74	25	50	27	0	1	71	0.96
10828387--10828431	19	2.4	19	85	7	65	24	0	2	73	0.95
10828389--10828468	26	3.0	27	81	16	80	25	2	2	70	1.13
10829816--10829844	13	2.1	14	93	6	51	65	6	20	6	1.40
10833023--10833052	2	15.0	2	100	0	60	50	0	0	50	1.00
10834906--10834937	16	2.0	16	93	0	55	59	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10836071--10836104	2	17.0	2	100	0	68	50	0	0	50	1.00
10838573--10839286	201	3.5	199	80	5	706	41	12	12	33	1.81
10845473--10845596	48	2.5	50	85	6	164	45	6	16	31	1.72
10849541--10849582	18	2.3	18	87	0	57	80	0	4	14	0.86
10849526--10849598	35	2.0	37	87	10	107	75	1	9	13	1.11
10849526--10849590	18	3.8	17	73	18	55	76	1	9	12	1.07
10849541--10849598	18	3.2	17	76	13	55	75	1	6	15	1.09
10849528--10849612	35	2.5	33	75	15	86	72	1	11	14	1.17
10850911--10850968	21	2.7	21	76	12	64	39	5	15	39	1.70
10850988--10851041	21	2.6	21	85	5	74	40	11	12	35	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105