genome.fa.s135.2.7.7.80.10.50.1000.51.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  51  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9750512--9750559	18	2.7	18	74	25	57	68	0	4	27	1.07
9751455--9751533	24	3.2	26	63	23	60	46	7	13	31	1.72
9751448--9751578	49	2.7	49	89	0	181	46	6	16	30	1.71
9753188--9753214	2	13.5	2	100	0	54	48	0	0	51	1.00
9759254--9759292	4	9.8	4	94	0	69	25	23	0	51	1.49
9759254--9759297	16	2.8	16	89	6	63	25	22	0	52	1.48
9761670--9761746	41	1.9	41	91	2	129	25	24	5	44	1.75
9761711--9761759	24	2.0	24	84	0	62	22	24	4	48	1.67
9761857--9761892	11	3.5	11	92	7	58	80	5	0	13	0.88
9764574--9764843	96	2.8	96	84	2	328	35	17	11	34	1.86
9764853--9764901	22	2.2	22	92	0	80	32	18	16	32	1.93
9764750--9764976	126	1.8	126	87	1	339	35	16	12	35	1.87
9765086--9765123	8	4.6	8	90	3	58	89	0	7	2	0.57
9765048--9765123	25	2.8	25	82	9	80	81	7	5	5	0.98
9765593--9766285	145	4.8	144	77	6	597	32	14	12	39	1.85
9771780--9771858	41	2.0	41	83	14	103	70	2	8	17	1.24
9772061--9772086	4	6.5	4	100	0	52	23	0	0	76	0.78
9772481--9772691	101	2.1	102	80	4	230	38	14	14	31	1.87
9774106--9774164	22	2.8	20	80	12	73	6	11	0	81	0.87
9780150--9780184	2	17.5	2	100	0	70	0	48	0	51	1.00
9780184--9780221	2	19.0	2	100	0	76	50	0	0	50	1.00
9781305--9781339	2	17.5	2	100	0	70	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9782891--9782934	7	5.6	8	86	7	56	2	9	0	88	0.59
9785387--9785787	144	2.8	144	82	7	440	31	14	12	40	1.84
9790770--9790826	11	4.9	11	75	10	51	28	3	0	68	1.06
9790765--9790826	24	2.6	23	80	12	63	29	3	0	67	1.06
9805912--9806012	48	2.1	48	85	3	132	48	10	1	38	1.50
9806506--9807299	226	3.4	226	79	7	776	46	12	8	32	1.72
9813604--9813641	19	2.0	19	85	10	51	52	2	2	42	1.29
9815525--9815556	16	1.9	17	93	6	57	71	0	9	18	1.12
9816921--9816974	28	1.9	28	84	0	72	9	18	1	70	1.23
9834049--9834093	20	2.4	19	85	10	65	42	2	4	51	1.34
9834049--9834095	17	2.6	18	78	18	53	44	2	4	48	1.34
9834726--9834773	22	2.2	22	85	7	62	56	4	0	39	1.19
9840359--9840397	21	1.9	19	85	10	51	35	7	15	41	1.76
9845744--9845770	8	3.4	8	100	0	54	88	0	0	11	0.50
9846488--9846529	19	2.2	20	86	4	59	19	14	23	42	1.87
9851450--9851478	15	2.0	15	93	6	51	41	0	6	51	1.28
9859152--9859194	18	2.4	18	76	11	52	65	2	2	30	1.18
9865026--9865088	32	2.0	32	100	0	126	28	39	6	25	1.80
9869445--9869499	26	2.1	26	96	0	101	20	14	23	41	1.89
9871101--9871182	38	2.2	38	88	0	119	40	4	2	52	1.36
9871434--9871478	23	2.0	23	86	0	63	77	6	0	15	0.96
9872078--9872110	14	2.4	14	90	5	50	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9873971--9874138	66	2.5	66	81	1	185	50	11	17	20	1.77
9890067--9890379	155	2.0	155	96	1	583	44	8	11	35	1.71
9893252--9893302	22	2.4	22	83	3	59	62	1	11	23	1.39
9894263--9894297	15	2.3	15	90	0	52	65	20	0	14	1.26
9894263--9894303	18	2.3	18	91	0	64	65	17	0	17	1.27
9894271--9894300	15	2.0	15	100	0	60	66	20	0	13	1.24
9900200--9900237	12	3.2	12	85	14	53	76	0	5	18	0.97
9900848--9900890	19	2.1	21	83	8	54	69	4	0	25	1.07
9910039--9910079	2	20.5	2	100	0	82	48	0	0	51	1.00
9911010--9911055	23	2.0	23	95	0	83	34	15	8	41	1.78
9912108--9912159	15	3.5	15	82	10	63	46	3	1	48	1.31
9913709--9913757	10	4.9	10	78	9	55	46	0	0	53	1.00
9917934--9918037	50	2.1	50	82	10	124	30	15	12	41	1.84
9918049--9918170	13	9.5	13	72	14	67	45	34	3	16	1.63
9918059--9918184	12	10.0	12	74	11	85	46	35	3	15	1.62
9918069--9918190	25	4.8	25	77	6	102	45	35	3	16	1.64
9918075--9918245	7	26.3	6	69	20	71	43	33	3	18	1.67
9918070--9918171	51	2.0	50	83	5	125	45	35	3	15	1.65
9918154--9918218	13	4.9	13	80	10	53	46	29	3	21	1.67
9918285--9918322	11	3.5	11	100	0	76	55	44	0	0	0.99
9918841--9918974	66	2.0	67	89	1	207	35	14	14	35	1.88
9919935--9919968	17	1.9	17	88	5	50	73	14	2	8	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9920213--9920298	37	2.3	37	87	0	127	33	23	9	33	1.87
9925625--9925661	17	2.2	17	90	0	56	78	0	21	0	0.75
9925633--9925671	11	3.2	13	82	17	57	79	0	20	0	0.73
9926832--9926871	20	1.9	20	85	10	53	72	0	22	5	1.04
9926889--9926927	19	2.1	19	90	9	62	89	2	7	0	0.56
9929730--9929861	39	3.3	40	75	11	112	39	9	11	39	1.74
9929730--9929938	40	5.3	41	71	15	122	38	11	11	38	1.78
9929840--9929975	37	3.6	36	75	15	123	37	13	11	37	1.81
9929804--9929991	77	2.4	77	87	3	272	37	14	11	36	1.82
9933405--9934447	161	6.5	160	80	5	1039	33	11	15	39	1.83
9933414--9934443	322	3.2	322	81	4	1177	33	11	15	40	1.83
9933137--9934451	483	2.8	474	81	6	1446	33	10	15	40	1.82
9935949--9936013	34	1.9	34	83	0	85	33	10	15	40	1.82
9937412--9937549	61	2.3	61	97	0	258	26	14	10	48	1.76
9937535--9937641	50	2.1	50	87	3	153	31	14	10	43	1.78
9937667--9937776	7	16.7	6	71	17	67	49	30	0	20	1.49
9937667--9937749	13	6.2	13	81	6	87	46	31	0	21	1.51
9937697--9937770	20	3.7	19	72	15	60	48	29	0	21	1.50
9937667--9937735	27	2.6	27	88	2	104	47	30	0	21	1.51
9937667--9937764	40	2.5	40	84	3	117	47	30	0	21	1.51
9937667--9937770	13	7.8	13	78	7	86	48	30	0	21	1.51
9937861--9937904	18	2.4	18	78	14	54	47	31	0	20	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9939105--9939138	17	1.9	18	94	5	61	0	29	0	70	0.87
9944017--9944068	15	3.6	14	80	10	59	30	1	3	63	1.23
9944017--9944068	14	3.6	14	75	10	50	30	1	3	63	1.23
9944111--9944205	45	2.1	45	90	0	145	46	11	9	32	1.72
9945495--9945560	26	2.6	26	75	2	62	24	0	12	63	1.28
9946539--9946613	5	13.8	5	75	17	53	18	6	0	74	1.03
9946548--9946648	42	2.4	41	78	4	112	18	4	1	74	1.10
9946533--9946648	48	2.5	46	79	9	126	17	6	1	75	1.09
9946771--9946874	21	4.9	22	72	20	96	31	6	8	52	1.58
9946774--9946889	20	5.6	20	75	15	85	31	6	10	51	1.62
9946956--9947010	24	2.3	23	84	9	74	34	3	10	50	1.55
9947088--9947235	51	2.9	51	80	7	167	38	8	16	36	1.79
9947725--9947764	19	2.2	17	86	13	53	12	7	5	75	1.18
9947749--9947783	14	2.4	15	90	4	54	14	2	8	74	1.17
9948703--9948808	42	2.5	42	84	4	140	21	11	5	61	1.50
9951641--9951680	18	2.3	17	87	12	55	87	5	5	2	0.73
9951659--9951769	59	1.9	56	81	5	132	54	12	16	16	1.70
9952022--9952088	33	2.1	33	86	5	93	77	5	7	8	1.12
9952912--9952964	17	3.1	17	72	2	52	35	20	11	32	1.88
9952899--9952986	34	2.6	33	68	12	79	30	20	11	37	1.88
9953033--9953129	34	2.9	34	72	9	99	28	14	14	42	1.85
9953011--9953150	68	2.0	69	86	1	192	30	13	13	42	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9952873--9953241	154	2.4	154	84	1	470	28	17	13	40	1.87
9953077--9953358	86	3.3	87	79	4	297	30	16	13	40	1.87
9953628--9953941	114	2.8	114	76	6	271	22	27	12	37	1.91
9954284--9954412	50	2.5	51	82	5	145	37	11	17	34	1.86
9954910--9954971	29	2.1	29	82	5	72	19	3	3	74	1.10
9954910--9954963	14	3.7	15	75	9	58	18	1	3	75	1.03
9955903--9955937	18	1.9	18	88	0	52	31	5	14	48	1.67
9955950--9956004	23	2.5	21	86	13	83	29	3	9	58	1.46
9955960--9956011	14	4.2	13	76	16	56	30	5	11	51	1.61
9955966--9956035	34	2.0	34	83	8	86	30	5	11	52	1.60

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105