genome.fa.s135.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  8  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1274175--1274532	109	3.2	110	77	8	334	41	9	9	39	1.70
1274163--1274456	110	2.7	110	78	10	298	42	10	8	38	1.69
1274837--1275021	92	2.0	92	91	2	300	36	6	9	47	1.62
1276027--1276056	14	2.2	13	94	5	51	66	6	6	20	1.38
1283718--1283829	36	3.1	36	82	3	129	34	19	3	41	1.69
1288415--1288451	3	12.3	3	100	0	74	32	0	0	67	0.91
1289835--1289890	26	2.1	27	80	9	62	8	19	3	67	1.32
1294780--1294813	2	17.0	2	100	0	68	50	0	0	50	1.00
1296975--1297001	7	3.9	7	100	0	54	11	0	0	88	0.50
1297426--1297486	4	15.8	4	77	13	65	21	4	1	72	1.13
1298630--1298685	24	2.2	25	87	6	78	44	10	5	39	1.62
1300760--1300817	28	2.1	28	93	0	98	48	13	6	31	1.69
1302482--1302551	24	2.9	24	80	14	65	44	15	7	32	1.74
1302559--1302614	20	2.8	20	81	10	69	50	12	5	32	1.63
1302710--1302757	25	2.0	24	91	4	78	50	12	4	33	1.59
1302728--1302784	30	2.0	28	83	13	71	52	14	3	29	1.58
1302819--1302971	73	2.1	73	79	4	166	56	11	5	27	1.55
1303015--1303139	20	6.3	20	75	6	112	52	10	5	32	1.59
1314440--1314485	23	2.0	24	86	4	67	56	4	0	39	1.19
1314340--1315707	661	2.0	681	83	8	1705	38	7	6	47	1.58
1315565--1318577	444	6.8	444	94	1	5190	31	13	8	46	1.72
1315565--1318577	887	3.4	891	96	1	5502	31	13	8	46	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1318298--1318859	282	2.0	282	92	1	930	29	16	5	47	1.70
1320044--1320130	42	2.1	42	91	4	140	42	4	3	49	1.40
1320571--1320599	13	2.1	14	93	6	51	41	0	0	58	0.98
1322084--1322109	13	2.0	13	100	0	52	38	7	15	38	1.76
1322967--1323029	32	2.0	32	84	6	83	46	1	6	46	1.38
1329191--1329236	21	2.1	22	84	11	60	60	2	4	32	1.28
1329872--1329963	36	2.6	36	81	5	98	43	6	14	35	1.71
1334256--1334284	15	1.9	15	100	0	58	37	0	20	41	1.53
1336897--1336927	3	10.3	3	100	0	62	32	0	0	67	0.91
1344749--1344828	32	2.5	31	83	4	88	32	7	12	47	1.69
1344945--1346706	444	4.0	445	92	1	2845	31	13	7	46	1.72
1347800--1347886	42	2.1	42	95	0	156	42	2	3	51	1.31
1349867--1349892	13	2.0	13	100	0	52	38	7	15	38	1.76
1350751--1350812	32	1.9	32	83	6	81	46	1	6	45	1.38
1351658--1351685	12	2.3	12	100	0	56	17	50	10	21	1.77
1356839--1356884	17	2.6	18	93	6	85	23	0	4	71	1.03
1357156--1357199	22	2.0	23	86	4	63	61	2	2	34	1.21
1357853--1357947	36	2.6	36	83	3	111	43	6	14	35	1.71
1364906--1364942	1	37.0	1	88	0	56	0	5	0	94	0.30
1364906--1364942	11	3.5	11	96	3	67	0	5	0	94	0.30
1376709--1378464	443	4.0	444	91	3	2696	31	13	8	46	1.73
1379560--1379646	42	2.1	42	95	0	156	42	2	3	51	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1381616--1381641	13	2.0	13	100	0	52	38	7	15	38	1.76
1382358--1382396	18	2.2	17	86	4	51	56	0	2	41	1.13
1386520--1386586	33	2.0	33	91	0	107	38	20	13	26	1.90
1390587--1390611	2	12.5	2	100	0	50	52	0	48	0	1.00
1400459--1400527	35	2.0	35	94	0	120	24	10	8	56	1.60
1401920--1402003	34	2.4	33	86	5	96	40	8	5	45	1.59
1401937--1402003	34	2.0	34	93	0	116	43	7	4	44	1.52
1410014--1410038	2	12.5	2	100	0	50	52	0	48	0	1.00
1416988--1417018	15	2.1	15	94	5	55	87	0	0	12	0.55
1418099--1418144	21	2.2	21	84	7	58	73	2	0	23	0.94
1421038--1421089	25	2.1	25	85	0	68	48	9	1	40	1.47
1423921--1423964	2	22.0	2	80	0	52	54	4	40	0	1.21
1426305--1426334	14	2.1	14	100	0	60	36	30	13	20	1.90
1436074--1436134	24	2.5	23	79	10	68	75	1	1	21	0.98
1444935--1444990	28	2.0	29	82	10	71	51	5	0	42	1.24
1461625--1461687	32	2.0	32	84	3	83	49	9	4	36	1.57
1462585--1462620	3	11.7	3	88	5	54	27	0	5	66	1.13
1464881--1464931	25	2.0	26	88	3	77	37	0	0	62	0.95
1464880--1464929	12	4.1	12	79	5	55	40	0	0	60	0.97
1464979--1465003	10	2.5	10	100	0	50	72	0	0	28	0.86
1465139--1465171	18	1.9	17	88	11	50	42	0	3	54	1.15
1468863--1468915	16	3.4	16	76	10	56	62	0	1	35	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1468861--1468928	30	2.3	30	82	5	84	57	0	5	36	1.23
1468931--1468961	16	1.9	16	100	0	62	64	0	0	35	0.94
1469267--1469299	3	11.3	3	87	6	50	63	0	36	0	0.95
1472538--1472604	22	3.0	22	73	8	64	41	0	2	55	1.15
1472583--1472641	6	9.5	6	77	15	50	52	0	0	47	1.00
1472732--1472783	21	2.5	21	84	6	70	55	0	0	44	0.99
1490082--1490125	22	2.0	21	83	12	54	43	0	0	56	0.99
1490742--1490766	3	8.3	3	100	0	50	68	0	0	32	0.90
1497545--1497601	30	1.9	30	85	0	78	45	0	1	52	1.11
1497574--1497625	22	2.5	22	90	6	81	48	0	0	51	1.00
1499931--1500032	32	3.1	33	83	12	122	46	7	0	46	1.32
1499943--1500032	34	2.7	34	83	11	116	48	7	0	43	1.31
1506080--1506114	14	2.5	14	85	0	52	74	0	2	22	0.95
1511948--1512009	11	5.2	12	77	14	58	51	1	0	46	1.10
1511925--1512003	6	13.8	6	77	17	71	49	0	0	50	1.00
1511958--1511991	7	5.1	7	96	3	54	55	0	0	44	0.99
1512866--1512915	20	2.5	20	96	3	91	52	0	0	48	1.00
1512904--1512938	18	1.9	18	88	0	52	62	0	0	37	0.95
1513025--1513099	37	2.0	37	94	5	134	42	29	12	16	1.83
1521356--1521397	6	6.1	7	78	15	52	64	0	2	33	1.07
1521356--1521394	13	2.9	13	92	3	60	66	0	2	30	1.05
1521393--1521465	22	3.2	21	72	20	58	43	1	1	53	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1523443--1523480	16	2.2	18	90	9	62	39	0	0	60	0.97
1523482--1523527	22	2.1	21	88	4	65	36	0	0	63	0.95
1524753--1524835	31	2.8	30	80	12	82	55	0	0	44	0.99
1524723--1524813	30	3.0	31	73	15	84	52	1	0	46	1.07
1543022--1543070	22	2.3	22	86	6	66	38	6	4	51	1.46
1543022--1543070	20	2.3	20	86	10	62	38	6	4	51	1.46
1543032--1543076	23	2.0	22	82	4	54	40	8	4	46	1.55
1546880--1547025	70	2.1	70	98	1	283	36	21	8	32	1.85
1547866--1547907	19	2.3	19	80	15	52	4	26	2	66	1.23
1548406--1548434	2	14.5	2	100	0	58	48	0	0	51	1.00
1558121--1558174	28	1.9	28	84	0	72	33	20	5	40	1.76
1562595--1562634	2	20.0	2	100	0	80	50	0	0	50	1.00
1565466--1565507	13	3.2	13	83	9	50	40	2	0	57	1.12
1577175--1577335	67	2.4	67	79	4	173	24	20	23	31	1.98
1577559--1577585	2	13.5	2	100	0	54	51	0	0	48	1.00
1581483--1581535	15	3.4	16	82	17	67	41	1	3	52	1.30
1581494--1581537	14	3.1	14	78	18	54	38	0	4	56	1.20
1581765--1581882	52	2.3	52	100	0	236	36	12	5	44	1.67
1582927--1582988	20	2.7	23	73	19	67	33	1	0	64	1.03
1582927--1582972	24	2.0	24	86	4	67	34	0	0	65	0.93
1586335--1586373	18	2.2	18	86	9	53	33	7	5	53	1.51
1595360--1595385	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1604393--1604428	2	18.0	2	88	0	54	47	2	0	50	1.15
1614577--1614610	2	17.0	2	100	0	68	50	0	0	50	1.00
1615626--1615679	27	2.0	27	85	7	74	51	1	3	42	1.30
1619743--1620159	217	1.9	217	83	2	543	32	8	12	46	1.72
1620389--1620805	219	1.9	218	82	1	521	34	7	10	48	1.64
1624503--1624556	23	2.3	23	100	0	108	35	5	11	48	1.62
1624657--1625194	203	2.7	199	80	4	609	34	10	11	43	1.75
1627424--1627463	21	1.9	20	85	10	53	65	2	5	27	1.27
1627424--1627463	20	2.0	21	85	5	55	65	2	5	27	1.27
1627522--1627565	12	3.5	12	81	6	52	43	2	2	52	1.26

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105