genome.fa.s135.2.7.7.80.10.50.1000.15.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  15  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3002410--3002451	20	2.3	18	84	12	50	4	9	54	30	1.53
3003179--3003226	12	3.8	12	78	13	51	81	6	0	12	0.87
3008909--3008947	17	2.3	17	86	0	51	82	5	0	12	0.83
3008907--3008949	9	4.7	9	77	5	50	83	4	0	11	0.78
3010027--3010070	21	2.1	21	82	0	52	31	0	2	65	1.05
3010201--3010235	10	3.5	10	88	0	52	80	5	5	8	1.03
3010957--3011037	5	15.8	5	79	15	62	80	0	2	17	0.82
3010957--3011095	7	18.1	7	73	18	68	74	1	1	22	0.97
3010957--3011038	11	7.4	11	76	16	80	80	0	2	17	0.82
3010957--3011038	6	13.7	6	82	13	82	80	0	2	17	0.82
3010957--3011095	12	11.1	12	71	19	81	74	1	1	22	0.97
3011070--3011098	4	7.2	4	100	0	58	75	0	0	24	0.80
3011885--3011996	26	4.6	23	76	13	91	72	0	3	23	1.06
3011900--3012074	23	7.8	22	70	16	101	72	0	3	23	1.04
3011928--3012076	29	5.2	28	71	18	92	74	0	2	22	0.99
3011900--3012063	4	41.8	4	68	17	78	71	0	3	23	1.05
3011884--3012074	84	2.3	80	78	12	192	72	1	3	23	1.06
3012047--3012076	11	2.6	12	94	5	53	83	0	0	16	0.65
3012047--3012076	6	5.2	6	92	8	53	83	0	0	16	0.65
3012339--3012901	42	13.1	40	76	13	366	38	21	16	23	1.93
3012529--3012688	47	3.5	47	82	13	181	43	19	15	22	1.88
3012291--3012844	81	6.5	82	74	15	280	38	20	16	23	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3012491--3012845	43	8.0	45	77	13	203	41	19	16	22	1.90
3018542--3018700	59	2.7	58	91	4	246	36	11	6	44	1.68
3018729--3018786	5	10.8	5	82	10	62	75	0	5	18	0.98
3018729--3018786	17	3.6	16	80	11	64	75	0	5	18	0.98
3018729--3018780	11	4.7	11	82	15	63	76	0	3	19	0.93
3018800--3018853	3	18.0	3	96	0	99	64	0	1	33	1.04
3018753--3018865	15	7.4	15	69	23	51	68	1	1	28	1.10
3019665--3019773	25	4.4	24	65	17	62	72	0	5	21	1.10
3019634--3019802	4	41.8	4	65	19	50	70	1	5	22	1.17
3019733--3019800	27	2.5	27	85	0	91	70	1	2	25	1.09
3019919--3019972	27	2.0	27	82	3	65	64	3	0	31	1.11
3023163--3023847	144	4.7	144	90	2	993	33	18	12	35	1.89
3023896--3024043	73	2.1	70	83	6	181	29	16	24	29	1.97
3026248--3026298	24	2.1	24	88	0	75	27	25	13	33	1.94
3026955--3027048	49	1.9	49	91	4	154	38	6	18	37	1.76
3033062--3033101	16	2.5	16	91	0	62	32	0	25	42	1.55
3033553--3033585	16	2.0	17	88	5	50	39	3	6	51	1.42
3046335--3046361	3	9.0	3	100	0	54	66	0	0	33	0.92
3056293--3056597	144	2.1	144	96	0	565	33	19	13	33	1.91
3060690--3060727	13	2.8	14	84	4	51	76	0	5	18	0.97
3061030--3061075	18	2.6	18	77	16	51	39	4	10	45	1.59
3063922--3063960	21	1.9	20	89	5	60	17	5	0	76	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3064047--3064094	24	2.0	22	84	11	60	45	10	4	39	1.58
3063781--3064167	212	1.8	210	80	6	469	35	8	5	50	1.55
3064509--3064559	19	2.5	21	84	15	72	1	29	0	68	1.00
3064508--3064545	17	2.2	18	90	4	60	2	28	0	68	1.03
3065158--3065196	16	2.5	15	88	12	60	0	5	10	84	0.76
3065243--3065828	87	6.8	86	77	7	443	44	16	14	25	1.85
3065249--3065833	43	13.5	42	78	7	207	43	16	14	25	1.86
3065384--3065826	43	10.3	42	80	6	386	43	16	14	25	1.86
3065243--3065827	130	4.5	129	79	5	500	44	16	14	25	1.85
3066545--3066669	65	1.9	65	90	0	196	34	20	5	40	1.76
3067333--3067376	19	2.3	18	81	11	52	2	13	0	84	0.73
3067328--3067413	10	8.4	10	71	12	50	2	19	0	77	0.87
3090322--3090705	144	2.7	144	93	0	644	36	12	17	33	1.87
3100033--3100086	13	4.2	13	79	11	58	5	7	5	81	0.98
3104764--3104909	72	2.0	72	85	2	195	29	21	19	29	1.98
3112646--3112683	3	12.7	3	100	0	76	31	0	0	68	0.90
3112910--3112956	23	2.0	24	87	4	69	36	21	17	25	1.94
3113677--3113731	17	3.3	17	80	7	51	69	3	3	23	1.21
3113717--3114080	195	1.9	193	83	9	470	44	7	12	35	1.70
3125861--3126707	142	5.9	140	82	7	953	27	13	22	36	1.91
3125862--3126707	46	17.8	47	83	7	903	27	13	22	36	1.91
3126888--3126931	3	14.7	3	100	0	88	31	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3138739--3138777	20	2.0	20	84	0	51	17	0	10	71	1.12
3148639--3148671	2	16.5	2	100	0	66	51	0	0	48	1.00
3149043--3149067	13	1.9	13	100	0	50	96	0	4	0	0.24
3149041--3149073	15	2.2	15	100	0	66	93	0	6	0	0.33
3154908--3154941	17	2.0	17	88	11	52	41	0	0	58	0.98
3157046--3157090	8	5.4	9	84	12	53	84	13	0	2	0.72
3157046--3157083	20	2.0	20	94	5	69	86	13	0	0	0.56
3157052--3157090	17	2.4	17	91	4	62	84	12	0	2	0.72
3158022--3158101	38	2.1	38	88	0	115	21	37	26	15	1.92
3158584--3158683	16	6.2	16	75	10	89	49	31	3	17	1.61
3158574--3158662	32	2.7	33	79	10	110	49	32	1	16	1.54
3161410--3161484	32	2.5	30	82	6	80	28	17	12	42	1.84
3161684--3161752	8	8.4	8	70	12	50	2	5	8	82	0.92
3161691--3161752	22	2.8	21	80	20	65	3	4	9	82	0.93
3161696--3161752	15	3.6	16	83	7	71	3	5	10	80	0.98
3161684--3161757	36	2.1	35	85	7	96	2	5	9	82	0.92
3161710--3161760	5	10.0	5	81	12	50	1	3	11	82	0.89
3166161--3166190	15	2.0	15	93	0	51	50	0	0	50	1.00
3166683--3166729	18	2.5	19	83	13	53	72	2	4	21	1.12
3166844--3166906	32	2.0	31	87	3	90	53	1	14	30	1.50
3168469--3169126	64	10.3	65	73	9	381	36	14	11	37	1.83
3168538--3169149	128	4.8	127	75	8	490	35	14	11	38	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3168467--3169079	320	1.9	319	79	6	695	36	15	10	37	1.82
3168497--3169126	255	2.5	252	78	9	629	35	14	11	38	1.82
3168511--3169149	127	5.0	128	75	8	507	35	14	11	38	1.82
3169169--3169417	64	3.9	64	70	8	175	34	12	12	40	1.79
3169368--3169930	303	1.9	301	80	6	672	37	12	12	37	1.81
3171579--3171608	3	10.0	3	100	0	60	33	0	33	33	1.58
3174132--3174161	3	10.0	3	92	0	51	66	3	0	30	1.07
3175985--3176009	3	8.3	3	100	0	50	36	32	0	32	1.58
3178408--3178456	23	2.1	24	82	17	59	46	0	2	51	1.12
3179553--3179610	29	2.0	29	100	0	116	62	3	10	24	1.43
3181880--3181954	32	2.4	32	90	2	116	45	17	6	30	1.74
3184666--3184752	2	43.0	2	72	2	57	41	6	8	43	1.61
3184670--3184744	39	1.9	39	86	0	105	40	8	9	42	1.66
3185177--3185213	2	18.5	2	88	0	56	56	0	0	43	0.99
3190534--3190672	75	1.9	75	90	0	224	42	8	2	46	1.49
3190760--3190804	20	2.2	20	80	7	56	31	2	2	64	1.18
3192350--3192380	6	5.2	6	92	0	53	54	0	29	16	1.42
3193092--3193118	3	9.0	3	100	0	54	66	0	0	33	0.92
3197343--3197375	12	2.8	12	95	0	57	9	15	24	51	1.72
3199084--3199119	16	2.2	16	90	0	54	55	0	0	44	0.99
3207315--3207371	30	1.9	30	92	0	96	38	5	0	56	1.22
3213721--3213774	28	1.9	27	82	14	65	50	5	1	42	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3214356--3214381	4	6.5	4	100	0	52	76	0	0	23	0.78
3222814--3222856	23	2.0	22	86	9	61	58	2	2	37	1.24
3223375--3223407	13	2.4	14	90	5	50	84	3	12	0	0.72
3224246--3224526	139	2.0	139	97	0	526	29	16	19	34	1.93
3227721--3227772	23	2.4	21	72	18	52	59	1	1	36	1.19
3235030--3235079	24	2.0	26	84	7	68	24	2	4	70	1.15
3235250--3235278	2	14.5	2	100	0	58	48	0	0	51	1.00
3238465--3238534	35	2.0	35	91	0	113	28	8	27	35	1.86
3241533--3241557	6	4.2	6	100	0	50	84	0	0	16	0.63
3242166--3242692	271	1.9	271	98	0	1018	32	10	25	32	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105