genome.fa.s135.2.7.7.80.10.50.1000.60.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  60  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11026300--11034054	181	43.0	181	72	9	3435	39	8	10	41	1.69
11026497--11027598	559	2.0	565	81	3	1319	39	7	9	43	1.67
11026712--11027419	377	1.9	378	83	3	933	39	8	10	42	1.68
11027061--11027717	184	3.7	175	79	8	623	39	8	9	42	1.69
11027760--11028254	184	2.7	180	80	6	543	39	7	9	42	1.67
11028023--11028463	239	1.8	240	81	7	556	41	7	10	39	1.68
11028297--11034027	538	10.7	535	76	9	3110	39	8	10	41	1.69
11028249--11034038	181	32.3	181	75	8	3923	39	8	10	41	1.69
11031355--11031395	18	2.4	17	88	8	57	46	7	4	41	1.53
11036390--11038068	181	9.4	179	74	8	807	40	8	10	41	1.69
11036376--11037977	360	4.5	354	76	8	1231	40	8	10	41	1.69
11036472--11037977	532	2.8	531	81	5	1506	40	8	10	40	1.69
11036973--11038137	181	6.5	178	77	5	1010	40	8	10	40	1.69
11040234--11040302	35	1.9	36	97	2	131	42	0	7	50	1.30
11040337--11040940	176	3.4	176	76	5	488	40	6	9	42	1.64
11040269--11041083	177	4.6	177	75	7	668	40	6	9	43	1.63
11040975--11041198	114	1.9	116	83	1	290	39	8	11	40	1.71
11041093--11041584	179	2.7	180	80	5	532	41	9	10	38	1.72
11041554--11041597	18	2.6	17	85	7	54	43	6	9	40	1.63
11041614--11043956	181	13.1	178	76	6	1676	41	9	8	40	1.67
11043961--11046464	180	14.0	179	77	7	1925	41	10	7	39	1.68
11043961--11046434	361	6.9	360	76	7	2016	41	10	8	39	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11044072--11046216	896	2.4	895	79	6	2207	42	10	8	39	1.68
11046601--11046970	182	2.0	181	80	5	408	42	8	7	42	1.62
11047120--11047167	17	2.7	18	75	15	55	41	8	8	41	1.65
11047144--11047918	181	4.4	178	75	9	593	38	9	9	42	1.70
11047818--11048047	120	1.9	120	86	3	329	34	14	7	43	1.75
11048074--11048117	21	2.0	24	86	13	67	61	0	2	36	1.09
11048092--11048133	17	2.5	17	84	7	50	59	2	2	35	1.23
11047652--11048233	301	1.9	300	79	2	639	39	12	6	41	1.69
11047938--11049897	180	11.0	181	74	7	1247	42	9	8	39	1.68
11048596--11048656	24	2.5	25	76	12	65	59	3	1	36	1.24
11050522--11050555	16	2.1	16	88	0	50	70	5	0	23	1.09
11050011--11052481	180	13.9	181	73	11	1492	42	9	7	39	1.67
11050997--11051310	164	1.9	165	86	3	445	46	9	7	37	1.64
11051161--11052481	182	7.4	179	74	11	965	41	10	8	39	1.69
11050495--11052393	715	2.7	697	78	9	1762	42	9	8	39	1.67
11052666--11053018	182	1.9	181	80	1	411	42	9	6	41	1.64
11052686--11053197	182	2.8	181	75	4	397	41	8	7	41	1.65
11054466--11054797	175	1.9	173	80	7	386	45	10	6	37	1.65
11053817--11056520	181	15.0	179	74	7	1187	41	8	8	40	1.67
11053785--11056520	361	7.6	361	75	7	1778	42	8	8	40	1.67
11056234--11056825	322	1.8	322	79	5	694	40	9	8	41	1.68
11056633--11058416	180	10.1	176	70	11	810	41	10	7	40	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11058445--11058477	18	1.9	17	88	11	50	45	6	6	42	1.53
11058434--11059237	182	4.4	182	80	3	841	41	8	8	42	1.64
11058451--11059237	363	2.2	363	81	3	906	40	8	8	42	1.64
11062923--11062962	12	3.3	12	82	0	53	77	5	0	17	0.94
11063370--11063394	11	2.3	11	100	0	50	24	12	16	48	1.79
11063684--11063790	24	4.5	23	74	17	78	71	0	4	22	1.09
11063655--11063839	17	11.5	16	69	18	91	71	1	4	22	1.12
11063679--11063837	35	4.6	33	72	19	121	71	1	4	22	1.11
11063695--11063839	33	4.5	32	73	16	113	71	0	4	23	1.07
11063701--11063836	70	1.9	70	82	11	172	71	0	4	23	1.09
11063669--11063839	94	1.9	89	82	6	216	70	1	4	23	1.11
11063721--11063839	6	19.0	6	68	20	50	73	0	2	23	1.01
11064105--11064515	41	10.1	41	84	7	391	34	23	16	25	1.95
11064105--11064496	81	4.8	80	84	7	379	34	23	16	24	1.95
11064217--11064529	81	3.9	82	87	6	297	35	22	16	25	1.94
11064300--11064555	81	3.2	80	82	10	267	35	20	15	27	1.93
11065119--11065177	22	2.7	21	84	5	64	33	16	8	40	1.79
11065543--11065659	62	1.9	62	80	3	137	29	26	12	30	1.93
11073041--11073090	12	4.2	12	77	10	57	78	6	2	14	1.03
11073326--11073388	23	2.7	23	82	2	81	74	1	3	20	1.04
11073299--11073388	45	2.0	47	80	12	107	71	1	5	22	1.14
11073320--11073412	31	3.0	31	78	7	82	72	2	3	22	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11073320--11073416	15	6.4	14	73	18	63	72	2	3	22	1.10
11074176--11074208	18	1.9	17	88	11	50	42	9	0	48	1.35
11074092--11075732	180	9.1	181	72	11	726	43	9	8	39	1.67
11075613--11075870	130	2.0	129	84	4	340	38	10	8	42	1.69
11076083--11078166	180	11.7	180	75	9	1170	40	9	8	40	1.68
11076300--11098386	540	41.4	534	70	12	1915	41	9	8	40	1.69
11078214--11099068	898	23.4	887	73	11	8115	41	10	8	40	1.69
11082508--11082540	16	2.0	17	88	5	50	42	9	3	45	1.51
11078231--11099070	538	39.0	530	72	11	9059	41	10	8	40	1.69
11079104--11099067	181	112.1	174	70	13	6058	41	10	8	40	1.69
11083740--11095799	181	67.5	180	75	8	7972	41	10	8	40	1.69
11083740--11098939	714	21.3	696	72	11	4501	41	9	8	40	1.69
11089594--11089626	18	1.9	17	88	11	50	42	6	3	48	1.43
11091965--11095799	542	7.2	539	76	8	2971	41	10	8	40	1.69
11094428--11094735	167	1.8	168	80	7	376	40	11	7	39	1.71
11083869--11095573	540	21.9	520	71	13	2923	41	10	8	40	1.69
11092858--11095799	358	8.2	358	75	8	2299	41	10	8	40	1.68
11095655--11095939	140	2.0	140	81	1	329	40	8	5	45	1.60
11096167--11096211	16	2.9	14	81	18	54	35	6	8	48	1.61
11095813--11099068	357	9.1	355	72	10	1857	41	9	8	40	1.68
11095992--11099067	533	5.8	528	74	10	1813	41	9	8	40	1.68
11098660--11098714	17	3.2	17	70	17	51	40	7	5	47	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11098429--11099059	176	3.5	178	77	9	495	42	10	7	39	1.66
11099742--11099788	18	2.6	18	93	0	85	31	19	23	25	1.98
11104831--11104863	17	2.0	17	88	5	50	33	12	6	48	1.65
11104692--11105270	180	3.2	176	77	7	508	42	10	7	40	1.66
11105349--11105465	57	2.1	57	98	0	225	36	7	11	44	1.69
11105551--11109912	181	24.4	180	75	7	2924	42	9	8	39	1.68
11105551--11109904	718	6.1	718	75	8	2893	42	9	8	39	1.68
11105551--11109868	358	12.1	351	72	10	1674	42	9	8	39	1.68
11109918--11111149	180	6.9	179	76	7	929	41	10	8	39	1.70
11110896--11111403	254	2.0	254	82	3	612	40	11	8	40	1.71
11111148--11112445	181	7.3	179	76	8	959	40	9	8	40	1.69
11112495--11112774	137	2.0	138	91	3	456	58	7	4	29	1.47
11112494--11112711	68	3.2	67	64	13	165	56	8	5	29	1.50
11113220--11113266	19	2.4	19	89	3	67	78	6	2	12	1.02
11113717--11113741	11	2.3	11	100	0	50	84	0	8	8	0.79
11113785--11113829	24	2.0	24	86	8	67	82	0	6	11	0.84
11113793--11113830	17	2.3	17	86	4	51	81	0	5	13	0.85
11114093--11114137	22	2.1	21	83	4	54	73	4	11	11	1.23
11114154--11114205	17	3.0	17	83	13	70	71	5	5	17	1.26
11114144--11114206	17	3.5	18	80	10	58	71	4	6	17	1.25
11114156--11114210	25	2.2	25	77	6	58	76	5	5	12	1.13
11114256--11114296	11	3.5	12	84	15	59	78	0	7	14	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11114427--11114470	16	2.7	16	85	3	52	72	0	11	15	1.11
11114739--11114765	7	3.9	7	100	0	54	74	11	0	14	1.08
11114994--11115116	65	1.9	66	81	9	155	73	4	8	13	1.24
11115142--11115180	20	2.0	20	85	10	53	76	7	0	15	0.99
11115208--11115240	16	1.9	17	88	11	50	78	0	6	15	0.93
11115206--11115261	30	1.9	28	85	7	76	75	1	8	14	1.13
11115465--11115508	20	2.3	20	84	7	56	72	2	2	22	1.07
11115828--11115899	37	1.9	38	94	2	128	56	6	4	31	1.45
11116636--11116684	17	2.9	16	82	17	55	81	4	6	8	0.97
11116860--11116928	20	3.4	21	74	11	63	75	4	2	17	1.09

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105