genome.fa.s135.2.7.7.80.10.50.1000.29.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  29  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5817838--5817876	19	2.1	19	95	0	69	30	10	20	38	1.86
5818331--5818375	8	5.4	8	82	10	54	11	2	2	84	0.80
5818332--5818378	12	4.2	11	81	13	51	12	2	2	82	0.84
5818401--5818477	6	13.7	6	69	13	56	15	6	1	76	1.05
5818387--5818477	17	5.5	16	75	11	76	16	6	2	74	1.12
5818329--5818477	11	13.4	11	71	14	76	16	4	4	75	1.13
5818522--5819134	59	10.3	57	81	11	592	44	7	13	34	1.71
5818849--5818944	32	3.2	32	63	24	80	40	11	11	36	1.77
5827898--5828054	81	1.9	81	85	0	215	43	7	8	40	1.63
5828422--5828529	34	3.2	33	76	10	94	43	3	4	48	1.41
5828480--5828529	17	2.9	17	70	21	50	42	8	4	46	1.52
5828654--5828686	17	2.0	16	94	5	57	42	9	0	48	1.35
5830239--5830281	3	14.7	3	80	4	52	60	0	0	39	0.97
5831433--5831516	21	3.9	21	73	11	71	69	1	3	26	1.12
5831733--5831815	16	5.2	16	77	7	71	48	28	1	21	1.58
5831838--5831903	14	4.5	14	70	17	53	46	25	0	27	1.53
5831863--5831932	30	2.4	30	81	13	76	47	30	1	21	1.60
5831950--5831997	24	2.0	24	84	8	62	45	39	0	14	1.45
5831991--5832043	20	2.5	20	82	14	63	54	30	0	15	1.41
5831983--5832043	23	2.9	21	83	11	63	52	31	0	16	1.44
5834476--5834747	137	2.0	136	89	2	422	35	12	8	43	1.73
5835358--5835633	146	1.9	147	90	0	446	37	14	6	40	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5836559--5836757	79	2.5	80	84	3	258	22	7	24	45	1.78
5839903--5839978	35	2.2	34	80	4	89	39	13	10	36	1.79
5841255--5841808	209	2.6	206	78	8	534	51	5	10	32	1.60
5842060--5842128	32	2.2	32	89	0	102	53	13	2	30	1.54
5848972--5849595	312	2.0	313	93	0	1072	22	27	16	33	1.96
5857711--5857754	15	2.9	14	78	18	52	34	2	0	63	1.07
5864282--5864338	19	2.9	18	73	21	53	35	3	3	57	1.33
5864389--5864430	18	2.3	19	80	12	52	21	0	2	76	0.90
5864453--5864487	17	2.0	18	94	5	63	22	0	2	74	0.95
5864586--5864631	20	2.3	20	80	0	56	26	2	2	69	1.11
5865493--5865533	21	2.0	22	85	9	59	17	21	21	39	1.93
5874936--5874999	30	2.1	31	85	11	87	3	14	3	79	0.97
5875230--5875289	14	3.9	14	69	26	50	5	21	1	71	1.14
5879104--5879243	69	2.0	71	87	4	203	42	15	2	39	1.61
5884971--5885019	20	2.5	18	81	18	62	32	0	2	65	1.04
5885659--5885708	22	2.2	24	82	13	61	50	0	0	50	1.00
5888119--5888191	34	2.1	37	82	12	91	19	8	17	54	1.67
5906301--5906347	24	2.0	24	82	0	58	59	12	6	21	1.55
5906769--5906813	12	3.8	12	81	18	51	31	2	6	60	1.35
5908412--5908456	23	2.0	23	95	0	81	48	20	6	24	1.73
5909973--5910044	37	2.0	36	86	8	101	29	1	4	65	1.20
5912415--5912887	255	1.9	254	90	4	756	47	12	5	34	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5915348--5915602	140	1.8	139	83	9	344	40	14	9	35	1.78
5915541--5915759	104	2.1	104	83	1	278	34	15	5	44	1.70
5920391--5920428	8	4.6	8	81	18	51	76	0	2	21	0.91
5920381--5920427	15	2.9	17	81	15	64	72	2	4	21	1.12
5921357--5921427	34	2.1	34	89	0	106	47	16	4	30	1.66
5922765--5922819	19	2.8	19	75	2	56	47	1	1	49	1.23
5923697--5923783	14	6.2	14	75	16	74	47	0	4	48	1.22
5923705--5923793	14	6.3	14	69	19	60	50	0	4	44	1.22
5925711--5925751	17	2.4	18	80	12	50	36	4	4	53	1.44
5926361--5926421	29	2.0	31	81	12	74	32	0	4	62	1.17
5927425--5927463	17	2.2	18	86	13	55	69	5	0	25	1.09
5927439--5927474	18	1.9	18	88	5	54	69	5	0	25	1.10
5931596--5931621	2	13.0	2	100	0	52	50	0	0	50	1.00
5945501--5946068	282	2.0	282	97	0	1084	35	13	24	26	1.93
5953191--5953330	68	2.1	68	90	5	221	37	15	17	28	1.91
5958547--5958603	26	2.1	27	80	3	62	24	5	5	64	1.35
5958762--5958810	25	1.9	26	91	4	82	46	2	10	40	1.49
5959670--5959730	30	2.0	30	100	0	122	26	6	19	47	1.74
5965492--5965524	17	1.9	17	88	11	50	33	15	33	18	1.92
5970156--5970214	11	5.3	11	73	18	59	38	10	0	50	1.36
5970218--5970258	13	3.1	13	89	10	57	63	0	14	21	1.30
5973619--5973668	14	3.3	15	81	13	59	64	0	0	36	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5973667--5973705	17	2.2	19	86	9	55	71	10	0	17	1.12
5974590--5974624	17	2.2	16	90	10	54	20	0	0	80	0.72
5974870--5975047	40	4.4	40	78	11	186	40	14	12	32	1.84
5974860--5975047	81	2.3	81	83	9	226	40	14	13	31	1.85
5975135--5975279	33	4.2	33	70	11	85	40	18	17	23	1.91
5975459--5975498	19	2.2	19	86	4	55	2	7	5	85	0.83
5983632--5983680	3	16.7	3	82	4	64	28	0	6	65	1.16
5983607--5983678	29	2.5	29	86	4	83	29	2	6	61	1.36
5983640--5983678	20	2.0	20	100	0	78	25	0	7	66	1.18
5983634--5983680	20	2.5	17	87	12	58	27	0	6	65	1.16
5983671--5983729	25	2.4	24	82	2	64	15	10	0	74	1.06
5983686--5983728	16	2.7	16	85	7	52	9	9	0	81	0.88
5983686--5983736	24	2.1	25	88	3	77	9	7	1	80	0.98
5984181--5984268	31	2.8	31	80	1	104	26	10	21	42	1.85
5984497--5984536	19	2.1	19	85	0	53	12	5	5	77	1.09
5984774--5984810	17	2.2	18	85	9	51	56	16	0	27	1.40
5988325--5988458	55	2.4	55	79	7	146	58	11	15	14	1.62
5988750--5988833	11	7.3	12	72	14	54	82	8	8	1	0.91
5988750--5988833	12	6.2	12	73	20	60	82	8	8	1	0.91
5989527--5990151	119	5.3	117	79	3	536	20	22	14	42	1.88
5989527--5990229	238	3.0	237	79	3	696	19	21	14	43	1.87
5990386--5990458	38	1.9	38	88	0	110	32	5	5	56	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5993989--5994048	31	1.9	32	83	10	79	33	5	5	56	1.42
5994307--5994359	19	2.8	19	79	0	70	50	5	0	43	1.25
5994892--5994940	24	2.1	23	85	7	64	57	4	0	38	1.18
5994960--5994987	8	3.5	8	100	0	56	57	0	0	42	0.99
5994952--5994987	16	2.2	16	90	0	54	58	0	2	38	1.13
5997767--5997822	29	1.9	29	82	7	69	37	5	8	48	1.58
5998131--5998297	86	2.0	84	92	4	282	41	8	5	43	1.60
6003847--6003882	2	18.0	2	88	0	54	50	0	50	0	1.00
6003853--6003899	8	5.9	8	94	0	58	38	0	61	0	0.96
6003853--6003899	12	3.9	12	91	0	58	38	0	61	0	0.96
6013645--6013698	12	4.4	12	77	11	56	18	3	22	55	1.58
6015937--6015970	5	6.8	5	100	0	68	41	0	0	58	0.98
6017355--6017405	22	2.3	23	93	3	86	11	9	15	62	1.53
6018047--6018083	17	2.2	16	90	4	56	51	13	5	29	1.63
6018835--6018884	12	3.9	12	78	14	55	36	8	20	36	1.82
6018844--6018873	15	2.0	15	93	0	51	30	6	23	40	1.80
6018939--6018980	18	2.3	18	80	8	50	50	14	19	16	1.79
6021568--6021665	42	2.3	42	87	3	135	18	27	7	46	1.75
6022081--6022155	40	1.9	39	81	7	91	42	8	13	36	1.73
6022222--6022285	32	2.0	32	84	0	83	32	9	4	53	1.54
6022564--6022657	42	2.2	42	84	3	118	54	10	8	26	1.63
6023154--6023283	63	2.1	63	85	4	174	41	10	13	34	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6023162--6023297	63	2.2	63	82	4	159	41	9	12	36	1.76
6023287--6023486	65	3.2	62	79	12	187	33	15	12	39	1.84
6025461--6025520	12	5.4	11	81	15	61	20	0	5	75	0.99
6025459--6025520	10	5.7	10	80	19	63	20	0	4	74	1.00
6025461--6025520	24	2.8	21	82	12	77	20	0	5	75	0.99
6027443--6027480	18	2.1	18	85	9	51	73	0	18	7	1.06
6028261--6028304	23	2.0	22	81	4	52	47	6	20	25	1.74
6028649--6028963	21	14.8	21	83	4	346	33	8	17	40	1.80
6028647--6028963	22	14.9	22	83	4	375	33	8	17	40	1.81
6029455--6029501	16	3.0	16	79	17	62	36	6	17	40	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105